Wall clock time and date at job start Tue Mar 9 2021 15:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86306 * 109.47034 * 2 1 4 4 H 1.48489 * 109.47300 * 300.00344 * 3 2 1 5 5 H 1.48501 * 109.46993 * 60.00220 * 3 2 1 6 6 H 1.48500 * 109.47045 * 179.97438 * 3 2 1 7 7 C 1.50701 * 109.47064 * 240.00340 * 2 1 3 8 8 C 1.38186 * 119.84439 * 104.97736 * 7 2 1 9 9 C 1.38310 * 120.14625 * 179.69678 * 8 7 2 10 10 F 1.35095 * 120.08519 * 180.32056 * 9 8 7 11 11 C 1.39804 * 119.82922 * 0.57727 * 9 8 7 12 12 C 1.47692 * 120.15486 * 179.71850 * 11 9 8 13 13 O 1.21568 * 120.00294 * 359.72613 * 12 11 9 14 14 N 1.34777 * 120.00241 * 179.72398 * 12 11 9 15 15 C 1.46499 * 120.00358 * 180.02562 * 14 12 11 16 16 C 1.52557 * 108.99639 * 155.00302 * 15 14 12 17 17 C 1.53958 * 109.47748 * 197.90188 * 16 15 14 18 18 Si 1.86522 * 107.23915 * 301.79524 * 17 16 15 19 19 C 1.86517 * 110.14300 * 164.85587 * 18 17 16 20 20 C 1.53960 * 107.24215 * 75.96311 * 19 18 17 21 21 C 1.52541 * 109.48681 * 58.17967 * 20 19 18 22 22 C 1.52545 * 111.83720 * 282.77125 * 21 20 19 23 23 C 1.53834 * 109.54514 * 77.34379 * 22 21 20 24 24 C 1.86525 * 108.14192 * 44.45676 * 18 17 16 25 25 C 1.52550 * 108.99445 * 277.39138 * 15 14 12 26 26 C 1.39658 * 119.69192 * 359.44979 * 11 9 8 27 27 C 1.38071 * 119.84986 * 0.26910 * 26 11 9 28 28 F 1.35105 * 119.91822 * 180.02562 * 27 26 11 29 29 H 0.96702 * 114.00377 * 59.99813 * 1 2 3 30 30 H 1.09000 * 109.47298 * 119.99917 * 2 1 3 31 31 H 1.08001 * 119.92536 * 359.97438 * 8 7 2 32 32 H 0.97005 * 119.99617 * 0.02562 * 14 12 11 33 33 H 1.09003 * 108.97781 * 36.15507 * 15 14 12 34 34 H 1.08998 * 109.46948 * 77.89666 * 16 15 14 35 35 H 1.08997 * 109.46803 * 317.90309 * 16 15 14 36 36 H 1.08992 * 109.90288 * 182.35979 * 17 16 15 37 37 H 1.09008 * 109.96638 * 61.26435 * 17 16 15 38 38 H 1.09000 * 109.89913 * 316.52719 * 19 18 17 39 39 H 1.08999 * 109.96257 * 195.43092 * 19 18 17 40 40 H 1.08998 * 109.46268 * 298.17335 * 20 19 18 41 41 H 1.09000 * 109.45889 * 178.18350 * 20 19 18 42 42 H 1.09002 * 108.99690 * 43.35594 * 21 20 19 43 43 H 1.09001 * 108.99502 * 162.18937 * 21 20 19 44 44 H 1.09000 * 109.47160 * 197.24690 * 22 21 20 45 45 H 1.09006 * 109.47007 * 317.24603 * 22 21 20 46 46 H 1.09005 * 109.91567 * 182.30568 * 23 22 21 47 47 H 1.08993 * 109.94032 * 61.13907 * 23 22 21 48 48 H 1.08999 * 109.89669 * 74.99048 * 24 18 17 49 49 H 1.08999 * 109.89832 * 196.11960 * 24 18 17 50 50 H 1.09001 * 109.47104 * 282.11395 * 25 15 14 51 51 H 1.08998 * 109.47218 * 42.10547 * 25 15 14 52 52 H 1.07998 * 120.07944 * 180.30021 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5549 2.4566 -1.2124 5 1 1.5550 2.4565 1.2125 6 1 3.5349 1.7565 0.0006 7 6 1.9313 -0.7103 -1.2305 8 6 2.4525 0.0199 -2.2815 9 6 2.9211 -0.6260 -3.4112 10 9 3.4364 0.0888 -4.4352 11 6 2.8551 -2.0201 -3.4929 12 6 3.3477 -2.7168 -4.6984 13 8 3.8072 -2.0776 -5.6248 14 7 3.2877 -4.0612 -4.7716 15 6 3.7768 -4.7523 -5.9672 16 6 4.1784 -6.1747 -5.5892 17 6 5.0902 -6.7587 -6.6836 18 14 4.1367 -6.7023 -8.2857 19 6 5.2910 -6.9524 -9.7293 20 6 5.6380 -8.4514 -9.7817 21 6 4.3562 -9.2658 -9.9249 22 6 3.6042 -9.3775 -8.6024 23 6 2.8595 -8.0611 -8.3210 24 6 3.3060 -5.0368 -8.4088 25 6 2.6855 -4.7334 -7.0329 26 6 2.3265 -2.7513 -2.4269 27 6 1.8678 -2.0936 -1.3029 28 9 1.3566 -2.7996 -0.2706 29 1 -0.3934 0.4417 -0.7650 30 1 1.7923 -0.5138 0.8900 31 1 2.4983 1.0971 -2.2187 32 1 2.9207 -4.5712 -4.0326 33 1 4.6520 -4.2258 -6.3479 34 1 3.2846 -6.7913 -5.4936 35 1 4.7134 -6.1609 -4.6396 36 1 5.3475 -7.7897 -6.4410 37 1 5.9974 -6.1607 -6.7705 38 1 6.1985 -6.3662 -9.5845 39 1 4.7996 -6.6527 -10.6549 40 1 6.1499 -8.7381 -8.8631 41 1 6.2881 -8.6440 -10.6352 42 1 3.7109 -8.7854 -10.6605 43 1 4.6089 -10.2666 -10.2750 44 1 2.8846 -10.1941 -8.6615 45 1 4.3122 -9.5746 -7.7974 46 1 2.3531 -8.1197 -7.3575 47 1 2.1342 -7.8681 -9.1113 48 1 4.0418 -4.2730 -8.6606 49 1 2.5258 -5.0667 -9.1693 50 1 1.9353 -5.4887 -6.7982 51 1 2.2161 -3.7499 -7.0550 52 1 2.2770 -3.8287 -2.4813 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739362_12360598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:12:26 Heat of formation + Delta-G solvation = -179.759828 kcal Electronic energy + Delta-G solvation = -33565.401525 eV Core-core repulsion = 28902.535691 eV Total energy + Delta-G solvation = -4662.865834 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 383.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.15477 -50.08571 -41.48612 -40.07645 -38.02966 -37.57995 -37.30362 -34.49437 -32.90361 -32.04344 -31.85979 -31.39985 -28.26232 -27.34898 -26.27506 -24.44835 -23.78791 -23.53290 -23.21188 -21.79584 -21.55062 -21.02119 -19.67215 -18.81860 -18.66884 -17.95385 -17.36898 -17.15755 -16.93113 -16.58904 -16.41928 -16.34123 -16.09683 -15.93763 -15.85689 -15.61928 -15.29730 -15.10253 -15.07125 -14.83630 -14.78231 -14.57251 -13.85203 -13.76348 -13.68954 -13.38051 -13.24512 -13.21578 -13.12872 -13.04026 -12.77817 -12.55984 -12.35027 -12.29038 -12.21391 -12.16105 -11.93860 -11.88623 -11.86555 -11.56149 -11.44986 -11.20366 -10.63755 -10.57520 -10.34613 -10.17885 -10.08055 -10.07162 -9.83998 -0.83186 -0.34190 1.03364 1.36022 1.41389 1.50404 1.81214 1.87216 1.87969 1.94070 1.97784 2.22617 2.67161 2.76441 2.83481 3.09371 3.27024 3.49433 3.54009 3.74320 3.77559 4.02917 4.05005 4.13057 4.15013 4.20133 4.29402 4.31487 4.35475 4.39169 4.50454 4.51055 4.52783 4.62624 4.65102 4.65990 4.72536 4.81213 4.82907 4.85301 4.97198 5.04268 5.15191 5.21593 5.24265 5.24944 5.29144 5.31260 5.36248 5.42190 5.44051 5.48697 5.50301 5.54348 5.68500 6.33245 6.60109 7.00794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.084 4.084 3 Si 0.976 3.024 4 H -0.242 1.242 5 H -0.264 1.264 6 H -0.252 1.252 7 C -0.095 4.095 8 C -0.139 4.139 9 C 0.137 3.863 10 F -0.126 7.126 11 C -0.149 4.149 12 C 0.555 3.445 13 O -0.561 6.561 14 N -0.704 5.704 15 C 0.134 3.866 16 C -0.114 4.114 17 C -0.407 4.407 18 Si 1.056 2.944 19 C -0.425 4.425 20 C -0.112 4.112 21 C -0.135 4.135 22 C -0.112 4.112 23 C -0.409 4.409 24 C -0.423 4.423 25 C -0.117 4.117 26 C -0.076 4.076 27 C 0.108 3.892 28 F -0.124 7.124 29 H 0.393 0.607 30 H 0.133 0.867 31 H 0.166 0.834 32 H 0.416 0.584 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.040 0.960 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -4.226 2.988 5.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.193 4.193 3 Si 0.799 3.201 4 H -0.165 1.165 5 H -0.189 1.189 6 H -0.176 1.176 7 C -0.097 4.097 8 C -0.158 4.158 9 C 0.116 3.884 10 F -0.104 7.104 11 C -0.153 4.153 12 C 0.342 3.658 13 O -0.441 6.441 14 N -0.357 5.357 15 C 0.031 3.969 16 C -0.151 4.151 17 C -0.494 4.494 18 Si 1.246 2.754 19 C -0.509 4.509 20 C -0.150 4.150 21 C -0.173 4.173 22 C -0.149 4.149 23 C -0.495 4.495 24 C -0.507 4.507 25 C -0.155 4.155 26 C -0.096 4.096 27 C 0.089 3.911 28 F -0.102 7.102 29 H 0.242 0.758 30 H 0.150 0.850 31 H 0.183 0.817 32 H 0.254 0.746 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.106 0.894 51 H 0.059 0.941 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.480 -3.258 2.861 4.362 hybrid contribution -0.266 0.037 -0.640 0.695 sum -0.746 -3.221 2.220 3.983 Atomic orbital electron populations 1.86569 1.16401 1.81903 1.50174 1.25125 0.85667 1.11536 0.97016 0.85282 0.80187 0.73629 0.81049 1.16546 1.18857 1.17596 1.20563 0.98816 0.92862 0.97443 1.21099 1.00831 1.02257 0.91591 1.17828 0.96247 0.88605 0.85701 1.91595 1.83753 1.77668 1.57421 1.19862 1.06358 0.92316 0.96745 1.18100 0.78537 0.83238 0.85960 1.90866 1.46549 1.66863 1.39775 1.45947 1.63256 1.05243 1.21206 1.21196 0.97019 0.94160 0.84570 1.21538 1.01212 0.92419 0.99966 1.26209 1.05557 1.04548 1.13077 0.78628 0.66232 0.64465 0.66104 1.26470 1.10886 0.98816 1.14768 1.21273 0.97253 0.94210 1.02246 1.21534 0.96924 1.00335 0.98496 1.21253 0.99087 0.97502 0.97093 1.26274 1.09679 1.08769 1.04803 1.26479 1.07188 1.18695 0.98301 1.21614 0.97980 1.01784 0.94142 1.21385 0.95832 1.02467 0.89878 1.17291 0.98941 0.88910 0.85994 1.91583 1.84328 1.78071 1.56229 0.75767 0.84972 0.81708 0.74552 0.91253 0.88740 0.90112 0.88547 0.90678 0.91012 0.91220 0.90906 0.92810 0.92130 0.92065 0.92238 0.90804 0.89573 0.90917 0.91885 0.90360 0.89392 0.94115 0.79941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.26 12.88 -148.98 -1.92 -0.66 16 2 C -0.08 0.32 2.44 71.24 0.17 0.49 16 3 Si 0.98 -4.00 25.48 68.60 1.75 -2.25 16 4 H -0.24 1.18 6.72 99.48 0.67 1.85 16 5 H -0.26 0.18 7.11 99.48 0.71 0.89 16 6 H -0.25 0.64 7.11 99.48 0.71 1.35 16 7 C -0.10 0.22 5.27 -19.78 -0.10 0.11 16 8 C -0.14 0.13 8.62 22.27 0.19 0.32 16 9 C 0.14 0.58 7.28 22.67 0.17 0.74 16 10 F -0.13 -1.31 15.55 44.97 0.70 -0.62 16 11 C -0.15 -0.28 5.88 -20.06 -0.12 -0.40 16 12 C 0.55 3.08 7.51 86.74 0.65 3.73 16 13 O -0.56 -8.39 14.99 -3.93 -0.06 -8.45 16 14 N -0.70 1.25 4.99 -446.97 -2.23 -0.99 16 15 C 0.13 -0.13 2.00 44.70 0.09 -0.04 16 16 C -0.11 0.75 5.07 30.77 0.16 0.90 16 17 C -0.41 2.40 4.97 72.31 0.36 2.75 16 18 Si 1.06 -5.52 9.19 68.60 0.63 -4.89 16 19 C -0.42 0.74 4.97 72.31 0.36 1.10 16 20 C -0.11 0.20 5.63 30.77 0.17 0.37 16 21 C -0.14 0.28 5.40 30.29 0.16 0.44 16 22 C -0.11 0.43 5.62 30.72 0.17 0.60 16 23 C -0.41 2.05 4.97 72.26 0.36 2.41 16 24 C -0.42 0.15 4.97 72.30 0.36 0.51 16 25 C -0.12 -0.01 5.20 30.77 0.16 0.15 16 26 C -0.08 0.31 9.51 22.57 0.21 0.52 16 27 C 0.11 -0.22 7.23 22.33 0.16 -0.05 16 28 F -0.12 0.00 16.73 44.97 0.75 0.75 16 29 H 0.39 -3.66 8.70 -74.06 -0.64 -4.30 16 30 H 0.13 -0.66 7.89 -2.39 -0.02 -0.68 16 31 H 0.17 -0.64 4.86 -2.91 -0.01 -0.66 16 32 H 0.42 -3.80 6.61 -92.70 -0.61 -4.41 16 33 H 0.07 0.29 7.33 -2.39 -0.02 0.28 16 34 H 0.09 -0.99 7.72 -2.39 -0.02 -1.01 16 35 H 0.08 -0.61 8.13 -2.39 -0.02 -0.63 16 36 H 0.10 -0.76 7.98 -2.39 -0.02 -0.78 16 37 H 0.07 -0.32 7.98 -2.38 -0.02 -0.34 16 38 H 0.07 -0.09 7.98 -2.39 -0.02 -0.11 16 39 H 0.07 -0.05 7.98 -2.39 -0.02 -0.06 16 40 H 0.07 -0.28 7.72 -2.39 -0.02 -0.29 16 41 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.06 -0.08 7.89 -2.39 -0.02 -0.10 16 43 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.07 -0.43 7.71 -2.38 -0.02 -0.45 16 46 H 0.09 -0.61 7.98 -2.38 -0.02 -0.63 16 47 H 0.07 -0.28 7.98 -2.39 -0.02 -0.30 16 48 H 0.06 0.18 7.98 -2.39 -0.02 0.16 16 49 H 0.08 -0.05 7.98 -2.39 -0.02 -0.06 16 50 H 0.09 -0.39 7.72 -2.39 -0.02 -0.41 16 51 H 0.04 0.24 7.89 -2.39 -0.02 0.22 16 52 H 0.18 -2.04 6.41 -2.91 -0.02 -2.06 16 Total: 0.00 -19.09 408.16 3.72 -15.36 By element: Atomic # 1 Polarization: -13.35 SS G_CDS: 0.41 Total: -12.94 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 3.69 Total: 14.68 kcal Atomic # 7 Polarization: 1.25 SS G_CDS: -2.23 Total: -0.99 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -1.98 Total: -9.11 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 1.45 Total: 0.13 kcal Atomic # 14 Polarization: -9.52 SS G_CDS: 2.38 Total: -7.14 kcal Total: -19.09 3.72 -15.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739362_12360598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.396 kcal (2) G-P(sol) polarization free energy of solvation -19.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds