Wall clock time and date at job start Tue Mar 9 2021 15:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47268 * 2 1 4 4 H 1.48508 * 109.47158 * 300.00323 * 3 2 1 5 5 H 1.48504 * 109.46842 * 59.99989 * 3 2 1 6 6 H 1.48497 * 109.47405 * 180.02562 * 3 2 1 7 7 C 1.50702 * 109.47098 * 240.00529 * 2 1 3 8 8 C 1.34845 * 125.89472 * 119.97668 * 7 2 1 9 9 C 1.40896 * 107.41864 * 180.02562 * 8 7 2 10 10 C 1.34843 * 107.41814 * 0.02562 * 9 8 7 11 11 C 1.50698 * 125.89359 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47114 * 85.02283 * 11 10 9 13 13 O 1.21287 * 119.99901 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00291 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00299 * 179.97438 * 14 12 11 16 16 C 1.52552 * 108.93216 * 83.81305 * 15 14 12 17 17 C 1.53952 * 109.47079 * 197.87585 * 16 15 14 18 18 Si 1.86519 * 107.25096 * 301.81045 * 17 16 15 19 19 C 1.86524 * 110.12661 * 164.82656 * 18 17 16 20 20 C 1.53960 * 107.23542 * 164.84274 * 19 18 17 21 21 C 1.52557 * 109.47137 * 301.80248 * 20 19 18 22 22 C 1.52553 * 111.88642 * 77.30346 * 21 20 19 23 23 C 1.53955 * 109.47686 * 282.69573 * 22 21 20 24 24 C 1.86515 * 108.14372 * 44.42677 * 18 17 16 25 25 C 1.52553 * 108.99917 * 206.14780 * 15 14 12 26 26 N 1.36348 * 108.21911 * 0.26209 * 10 9 8 27 27 H 0.96706 * 113.99560 * 59.99882 * 1 2 3 28 28 H 1.08993 * 109.47487 * 120.00494 * 2 1 3 29 29 H 1.08007 * 126.29110 * 359.97438 * 8 7 2 30 30 H 1.07998 * 126.28681 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.46833 * 325.02543 * 11 10 9 32 32 H 1.09000 * 109.47583 * 205.01958 * 11 10 9 33 33 H 0.97008 * 119.99515 * 359.97438 * 14 12 11 34 34 H 1.09002 * 108.98483 * 324.99893 * 15 14 12 35 35 H 1.08998 * 109.47610 * 317.87964 * 16 15 14 36 36 H 1.09000 * 109.47315 * 77.88376 * 16 15 14 37 37 H 1.09002 * 109.90283 * 182.37159 * 17 16 15 38 38 H 1.09000 * 109.96158 * 61.28069 * 17 16 15 39 39 H 1.08992 * 109.89895 * 284.27086 * 19 18 17 40 40 H 1.08994 * 109.90362 * 45.40699 * 19 18 17 41 41 H 1.08994 * 109.46585 * 181.80833 * 20 19 18 42 42 H 1.08996 * 109.47387 * 61.80595 * 20 19 18 43 43 H 1.08998 * 108.99895 * 316.68498 * 21 20 19 44 44 H 1.08996 * 108.93094 * 197.87976 * 21 20 19 45 45 H 1.08994 * 109.46931 * 162.69116 * 22 21 20 46 46 H 1.08999 * 109.46871 * 42.69798 * 22 21 20 47 47 H 1.09001 * 109.90220 * 298.77200 * 23 22 21 48 48 H 1.08988 * 109.90800 * 177.63165 * 23 22 21 49 49 H 1.09003 * 109.90034 * 196.14027 * 24 18 17 50 50 H 1.09001 * 109.96810 * 75.04027 * 24 18 17 51 51 H 1.09009 * 109.46840 * 282.15295 * 25 15 14 52 52 H 1.08997 * 109.47509 * 42.15158 * 25 15 14 53 53 H 0.96998 * 125.63857 * 179.73824 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5550 2.4565 -1.2125 5 1 1.5550 2.4564 1.2126 6 1 3.5350 1.7565 -0.0006 7 6 1.9313 -0.7103 -1.2305 8 6 2.7095 -0.1725 -2.1916 9 6 2.9441 -1.1743 -3.1541 10 6 2.2999 -2.2860 -2.7449 11 6 2.2743 -3.6086 -3.4668 12 6 3.4924 -4.4111 -3.0882 13 8 4.3014 -3.9543 -2.3086 14 7 3.6828 -5.6365 -3.6160 15 6 4.8672 -6.4165 -3.2485 16 6 4.5914 -7.1477 -1.9384 17 6 5.9237 -7.5957 -1.3104 18 14 6.7824 -8.6875 -2.5551 19 6 8.5758 -8.9036 -2.0899 20 6 9.1189 -10.0909 -2.9060 21 6 8.2934 -11.3372 -2.6015 22 6 6.9501 -11.3202 -3.3243 23 6 5.9840 -10.3729 -2.5900 24 6 6.6464 -7.8777 -4.2297 25 6 5.1960 -7.3839 -4.3814 26 7 1.6713 -2.0056 -1.5679 27 1 -0.3933 0.4418 -0.7651 28 1 1.7924 -0.5139 0.8899 29 1 3.0834 0.8404 -2.2189 30 1 3.5312 -1.0706 -4.0546 31 1 2.2735 -3.4351 -4.5429 32 1 1.3757 -4.1582 -3.1866 33 1 3.0355 -6.0021 -4.2393 34 1 5.7084 -5.7380 -3.1059 35 1 4.0724 -6.4793 -1.2514 36 1 3.9700 -8.0216 -2.1339 37 1 5.7326 -8.1557 -0.3949 38 1 6.5425 -6.7257 -1.0905 39 1 9.1338 -7.9997 -2.3337 40 1 8.6597 -9.1165 -1.0243 41 1 10.1599 -10.2701 -2.6377 42 1 9.0520 -9.8616 -3.9695 43 1 8.1176 -11.3926 -1.5272 44 1 8.8540 -12.2178 -2.9150 45 1 6.5321 -12.3267 -3.3377 46 1 7.0925 -10.9724 -4.3475 47 1 5.8195 -10.7266 -1.5722 48 1 5.0354 -10.3230 -3.1243 49 1 6.8754 -8.6017 -5.0117 50 1 7.3340 -7.0343 -4.2923 51 1 4.5162 -8.2351 -4.3410 52 1 5.0838 -6.8744 -5.3384 53 1 1.1310 -2.6259 -1.0539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739362_14644196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:31:05 Heat of formation + Delta-G solvation = -86.769408 kcal Electronic energy + Delta-G solvation = -28912.854801 eV Core-core repulsion = 25100.191896 eV Total energy + Delta-G solvation = -3812.662905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.34880 -40.77002 -37.95485 -37.62331 -37.30791 -34.10708 -32.83138 -32.03837 -31.94604 -31.86829 -29.49556 -27.49065 -26.43608 -24.95445 -23.58837 -23.25608 -21.88329 -21.46701 -21.39197 -21.03463 -20.92562 -18.97274 -18.05591 -17.50136 -16.78428 -16.43268 -16.36030 -16.26139 -15.99644 -15.54039 -15.20685 -15.11494 -14.94731 -14.89006 -14.81534 -14.38683 -14.13816 -13.94449 -13.84605 -13.70360 -13.49079 -13.36670 -13.25619 -13.05971 -12.82499 -12.72546 -12.51395 -12.28982 -12.26155 -12.16111 -12.05711 -11.95228 -11.87246 -11.78893 -11.57157 -11.41715 -10.94312 -10.63167 -10.29094 -10.18360 -10.09444 -9.98106 -9.82402 -8.97173 1.07366 1.14193 1.50728 1.56959 1.65768 1.83790 1.85963 1.89002 1.91896 1.96742 2.32129 2.51938 2.66575 3.50955 3.68241 3.77591 3.80427 4.00027 4.03710 4.12611 4.12959 4.21893 4.22983 4.30463 4.35919 4.42382 4.48836 4.50424 4.51861 4.61051 4.63630 4.69160 4.77285 4.81317 4.82660 4.86929 4.95944 5.02894 5.14626 5.21427 5.22841 5.23218 5.24871 5.26894 5.28706 5.39820 5.40801 5.43452 5.48709 5.52282 5.57183 5.67879 5.96654 6.10288 6.57806 6.62654 6.68913 7.31918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.059 4.059 3 Si 1.013 2.987 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.018 4.018 8 C -0.215 4.215 9 C -0.201 4.201 10 C 0.035 3.965 11 C -0.067 4.067 12 C 0.508 3.492 13 O -0.577 6.577 14 N -0.716 5.716 15 C 0.135 3.865 16 C -0.114 4.114 17 C -0.424 4.424 18 Si 1.056 2.944 19 C -0.425 4.425 20 C -0.112 4.112 21 C -0.135 4.135 22 C -0.112 4.112 23 C -0.408 4.408 24 C -0.408 4.408 25 C -0.112 4.112 26 N -0.533 5.533 27 H 0.391 0.609 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.418 0.582 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.092 0.908 52 H 0.078 0.922 53 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 -4.435 -4.791 7.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.169 4.169 3 Si 0.836 3.164 4 H -0.173 1.173 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.132 4.132 8 C -0.240 4.240 9 C -0.226 4.226 10 C -0.079 4.079 11 C -0.107 4.107 12 C 0.294 3.706 13 O -0.456 6.456 14 N -0.369 5.369 15 C 0.031 3.969 16 C -0.152 4.152 17 C -0.508 4.508 18 Si 1.246 2.754 19 C -0.510 4.510 20 C -0.150 4.150 21 C -0.173 4.173 22 C -0.149 4.149 23 C -0.494 4.494 24 C -0.495 4.495 25 C -0.150 4.150 26 N -0.129 5.129 27 H 0.241 0.759 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.255 0.745 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.113 0.887 50 H 0.091 0.909 51 H 0.110 0.890 52 H 0.097 0.903 53 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.518 -3.674 -3.589 5.720 hybrid contribution -0.252 -0.387 -0.089 0.470 sum -2.770 -4.061 -3.678 6.139 Atomic orbital electron populations 1.86458 1.17324 1.82002 1.50306 1.24775 0.84823 1.11217 0.96051 0.84756 0.78982 0.72546 0.80152 1.17331 1.19276 1.19245 1.20987 1.05939 0.86130 1.00097 1.20877 1.05603 1.00635 0.96931 1.20807 1.05891 0.93442 1.02420 1.19910 1.01680 0.96650 0.89658 1.20262 0.97163 0.90138 1.03163 1.21047 0.87669 0.81779 0.80059 1.90755 1.47358 1.71061 1.36441 1.46044 1.26220 1.16603 1.47999 1.21031 0.87901 0.93158 0.94826 1.21584 0.97765 1.00162 0.95689 1.26484 1.03386 1.09730 1.11165 0.78624 0.65130 0.65774 0.65900 1.26469 1.20321 1.00821 1.03364 1.21274 0.99100 0.94233 1.00361 1.21537 0.96523 0.98138 1.01085 1.21274 0.94239 0.99890 0.99519 1.26282 1.04648 1.15269 1.03223 1.26223 0.97966 1.07290 1.18010 1.21514 0.97382 0.98843 0.97235 1.41845 1.40828 1.11009 1.19180 0.75948 0.86453 0.84259 0.84352 0.83905 0.85262 0.74487 0.92055 0.94326 0.89616 0.90535 0.92207 0.91104 0.91231 0.92769 0.90933 0.92120 0.92004 0.92133 0.90843 0.90912 0.89590 0.88712 0.90938 0.88994 0.90325 0.74124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.60 12.88 -148.98 -1.92 -2.52 16 2 C -0.06 -0.09 3.08 71.24 0.22 0.12 16 3 Si 1.01 1.17 25.87 68.60 1.77 2.95 16 4 H -0.25 -0.25 7.11 99.48 0.71 0.45 16 5 H -0.27 -0.83 7.11 99.48 0.71 -0.12 16 6 H -0.27 -1.11 7.11 99.48 0.71 -0.40 16 7 C -0.02 -0.09 6.50 41.08 0.27 0.18 16 8 C -0.22 -1.52 9.37 22.14 0.21 -1.31 16 9 C -0.20 -1.40 10.76 22.14 0.24 -1.16 16 10 C 0.04 0.13 5.66 41.08 0.23 0.36 16 11 C -0.07 0.25 6.24 29.10 0.18 0.44 16 12 C 0.51 1.33 7.61 87.66 0.67 1.99 16 13 O -0.58 -7.95 15.68 -3.05 -0.05 -7.99 16 14 N -0.72 2.34 5.03 -443.94 -2.23 0.11 16 15 C 0.14 -0.11 2.02 44.69 0.09 -0.02 16 16 C -0.11 -0.03 5.20 30.77 0.16 0.13 16 17 C -0.42 -0.15 4.97 72.30 0.36 0.20 16 18 Si 1.06 -4.82 9.20 68.60 0.63 -4.19 16 19 C -0.42 0.47 4.97 72.31 0.36 0.83 16 20 C -0.11 0.15 5.64 30.77 0.17 0.32 16 21 C -0.14 0.24 5.40 30.30 0.16 0.41 16 22 C -0.11 0.40 5.64 30.77 0.17 0.57 16 23 C -0.41 1.89 4.97 72.30 0.36 2.25 16 24 C -0.41 2.04 4.96 72.31 0.36 2.40 16 25 C -0.11 0.67 5.08 30.77 0.16 0.82 16 26 N -0.53 -1.81 6.08 -171.12 -1.04 -2.85 16 27 H 0.39 -2.00 8.70 -74.05 -0.64 -2.64 16 28 H 0.12 0.09 7.96 -2.39 -0.02 0.07 16 29 H 0.14 0.68 6.22 -2.91 -0.02 0.66 16 30 H 0.14 0.69 8.06 -2.91 -0.02 0.67 16 31 H 0.14 -1.29 8.14 -2.39 -0.02 -1.31 16 32 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 33 H 0.42 -4.47 8.59 -92.70 -0.80 -5.27 16 34 H 0.06 0.33 7.29 -2.39 -0.02 0.32 16 35 H 0.04 0.22 7.95 -2.39 -0.02 0.21 16 36 H 0.09 -0.36 7.72 -2.39 -0.02 -0.38 16 37 H 0.08 0.01 7.98 -2.39 -0.02 -0.01 16 38 H 0.06 0.24 7.98 -2.39 -0.02 0.22 16 39 H 0.07 -0.04 7.98 -2.39 -0.02 -0.06 16 40 H 0.07 -0.01 7.98 -2.39 -0.02 -0.02 16 41 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.07 -0.24 7.72 -2.39 -0.02 -0.26 16 43 H 0.06 -0.06 7.88 -2.39 -0.02 -0.08 16 44 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.07 -0.40 7.72 -2.39 -0.02 -0.42 16 47 H 0.07 -0.26 7.98 -2.39 -0.02 -0.28 16 48 H 0.09 -0.58 7.98 -2.39 -0.02 -0.60 16 49 H 0.09 -0.66 7.98 -2.39 -0.02 -0.68 16 50 H 0.07 -0.22 7.98 -2.39 -0.02 -0.24 16 51 H 0.09 -0.90 7.72 -2.38 -0.02 -0.92 16 52 H 0.08 -0.53 8.13 -2.39 -0.02 -0.55 16 53 H 0.42 -0.21 8.96 -92.71 -0.83 -1.04 16 Total: 0.00 -21.20 409.30 0.92 -20.27 By element: Atomic # 1 Polarization: -13.72 SS G_CDS: -0.61 Total: -14.33 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 4.37 Total: 8.55 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -3.27 Total: -2.74 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.97 Total: -10.52 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: 2.41 Total: -1.24 kcal Total: -21.20 0.92 -20.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739362_14644196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.499 kcal (2) G-P(sol) polarization free energy of solvation -21.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds