Wall clock time and date at job start Tue Mar 9 2021 15:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86301 * 109.47285 * 2 1 4 4 H 1.48501 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46933 * 299.99357 * 3 2 1 6 6 H 1.48498 * 109.47468 * 59.99882 * 3 2 1 7 7 C 1.50703 * 109.46900 * 119.99496 * 2 1 3 8 8 C 1.38268 * 119.94026 * 65.00402 * 7 2 1 9 9 C 1.38145 * 120.05210 * 180.02562 * 8 7 2 10 10 C 1.38727 * 119.94808 * 359.97438 * 9 8 7 11 11 O 1.35898 * 120.05897 * 180.02562 * 10 9 8 12 12 C 1.42905 * 117.00276 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47179 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00363 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99988 * 179.97438 * 13 12 11 16 16 C 1.46493 * 119.99864 * 179.72721 * 15 13 12 17 17 C 1.52554 * 108.99478 * 276.15427 * 16 15 13 18 18 C 1.54015 * 109.45074 * 162.02828 * 17 16 15 19 19 Si 1.86520 * 107.17804 * 58.29995 * 18 17 16 20 20 C 1.86522 * 110.13232 * 75.89092 * 19 18 17 21 21 C 1.53961 * 107.22234 * 164.88170 * 20 19 18 22 22 C 1.52553 * 109.47301 * 301.78412 * 21 20 19 23 23 C 1.52552 * 111.89856 * 77.29204 * 22 21 20 24 24 C 1.53954 * 109.48016 * 282.72213 * 23 22 21 25 25 C 1.86518 * 108.14949 * 315.49470 * 19 18 17 26 26 C 1.52553 * 108.99648 * 153.84109 * 16 15 13 27 27 C 1.38736 * 119.88808 * 0.28177 * 10 9 8 28 28 C 1.38149 * 119.94179 * 359.46551 * 27 10 9 29 29 H 0.96703 * 114.00278 * 300.00276 * 1 2 3 30 30 H 1.08998 * 109.47791 * 239.99479 * 2 1 3 31 31 H 1.07992 * 119.97428 * 359.97438 * 8 7 2 32 32 H 1.08006 * 120.02655 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.46937 * 59.99714 * 12 11 10 34 34 H 1.09002 * 109.46814 * 299.99525 * 12 11 10 35 35 H 0.97000 * 119.99339 * 0.02562 * 15 13 12 36 36 H 1.08997 * 108.98457 * 34.99627 * 16 15 13 37 37 H 1.09003 * 109.46999 * 282.10387 * 17 16 15 38 38 H 1.08997 * 109.46696 * 42.09502 * 17 16 15 39 39 H 1.09002 * 109.96504 * 298.86602 * 18 17 16 40 40 H 1.08992 * 109.95456 * 177.73299 * 18 17 16 41 41 H 1.09000 * 109.90420 * 284.31041 * 20 19 18 42 42 H 1.09005 * 109.90695 * 45.45930 * 20 19 18 43 43 H 1.09000 * 109.47093 * 181.78137 * 21 20 19 44 44 H 1.08999 * 109.47004 * 61.78596 * 21 20 19 45 45 H 1.08996 * 108.99156 * 316.67118 * 22 21 20 46 46 H 1.08997 * 108.93176 * 197.86908 * 22 21 20 47 47 H 1.08999 * 109.46467 * 162.72306 * 23 22 21 48 48 H 1.08996 * 109.46905 * 42.73041 * 23 22 21 49 49 H 1.09004 * 109.90273 * 298.76379 * 24 23 22 50 50 H 1.08998 * 109.90595 * 177.62647 * 24 23 22 51 51 H 1.09000 * 109.90152 * 285.04082 * 25 19 18 52 52 H 1.08997 * 109.97005 * 163.94143 * 25 19 18 53 53 H 1.09001 * 109.46959 * 317.91891 * 26 16 15 54 54 H 1.09002 * 109.46703 * 77.91374 * 26 16 15 55 55 H 1.07997 * 120.03124 * 179.72098 * 27 10 9 56 56 H 1.07993 * 119.97088 * 180.23134 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 3.5350 1.7564 -0.0006 5 1 1.5551 2.4564 -1.2126 6 1 1.5550 2.4566 1.2124 7 6 1.9312 -0.7103 1.2306 8 6 1.6839 -2.0604 1.3973 9 6 2.1428 -2.7138 2.5247 10 6 2.8527 -2.0143 3.4897 11 8 3.3057 -2.6548 4.5994 12 6 4.0287 -1.8715 5.5511 13 6 4.4475 -2.7445 6.7058 14 8 4.1552 -3.9215 6.7134 15 7 5.1469 -2.2172 7.7302 16 6 5.5488 -3.0646 8.8556 17 6 4.3912 -3.1584 9.8447 18 6 4.6084 -4.3663 10.7752 19 14 6.2441 -4.1125 11.6348 20 6 6.0711 -2.8303 12.9784 21 6 7.3137 -2.9444 13.8802 22 6 7.4036 -4.3584 14.4456 23 6 7.9319 -5.3510 13.4146 24 6 6.8101 -5.7059 12.4219 25 6 7.4867 -3.5471 10.3640 26 6 6.7993 -2.4742 9.4999 27 6 3.0950 -0.6585 3.3226 28 6 2.6385 -0.0108 2.1909 29 1 -0.3934 0.4417 0.7650 30 1 1.7924 -0.5139 -0.8899 31 1 1.1308 -2.6045 0.6461 32 1 1.9490 -3.7683 2.6547 33 1 3.3922 -1.0660 5.9171 34 1 4.9135 -1.4480 5.0758 35 1 5.3804 -1.2757 7.7243 36 1 5.7791 -4.0628 8.4833 37 1 4.3450 -2.2450 10.4377 38 1 3.4563 -3.2848 9.2988 39 1 4.6350 -5.2862 10.1910 40 1 3.8063 -4.4177 11.5114 41 1 6.0228 -1.8347 12.5372 42 1 5.1705 -3.0229 13.5616 43 1 7.2350 -2.2297 14.6994 44 1 8.2080 -2.7294 13.2953 45 1 6.4117 -4.6754 14.7675 46 1 8.0711 -4.3529 15.3073 47 1 8.2688 -6.2556 13.9208 48 1 8.7669 -4.9043 12.8749 49 1 5.9800 -6.1735 12.9515 50 1 7.1916 -6.3824 11.6571 51 1 7.7886 -4.3885 9.7403 52 1 8.3589 -3.1213 10.8599 53 1 7.4855 -2.1397 8.7219 54 1 6.5197 -1.6273 10.1265 55 1 3.6435 -0.1107 4.0745 56 1 2.8300 1.0437 2.0586 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739362_2989410.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:32:10 Heat of formation + Delta-G solvation = -131.145127 kcal Electronic energy + Delta-G solvation = -31770.686348 eV Core-core repulsion = 27574.616745 eV Total energy + Delta-G solvation = -4196.069602 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.198 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.60905 -40.76972 -39.13820 -37.85566 -37.30364 -37.08151 -34.13953 -32.39032 -32.03981 -31.86470 -31.74483 -29.79195 -27.44298 -26.46473 -25.92625 -24.02767 -23.59658 -23.24682 -22.41488 -21.57187 -21.45583 -21.02776 -19.54186 -18.49812 -18.10089 -17.46298 -17.26508 -16.98267 -16.46674 -16.32770 -16.09927 -15.92844 -15.65179 -15.60652 -15.19870 -15.09071 -15.03818 -14.90338 -14.80070 -14.45025 -13.81770 -13.78855 -13.68648 -13.58129 -13.44906 -13.35780 -13.24945 -13.13447 -12.78007 -12.55992 -12.30148 -12.25337 -12.17948 -12.16359 -12.08487 -12.03473 -11.94560 -11.88529 -11.56619 -11.56082 -11.41961 -10.99808 -10.36602 -10.34616 -10.18227 -10.08775 -10.06294 -10.04973 -9.24930 0.25319 0.28866 1.21176 1.43409 1.47824 1.48029 1.54630 1.86569 1.89326 1.94584 1.97260 2.58730 2.63862 2.67321 3.50438 3.58753 3.70627 3.76522 3.82613 3.93370 3.99662 4.01602 4.04151 4.10361 4.13169 4.19486 4.27290 4.31064 4.35220 4.41514 4.49613 4.51675 4.57516 4.64143 4.65073 4.71312 4.80839 4.82434 4.85202 4.94889 4.96568 5.03655 5.14213 5.14704 5.21901 5.22876 5.23737 5.25296 5.28920 5.34882 5.41642 5.43406 5.48369 5.49247 5.49485 5.53723 5.67501 5.69416 6.25010 6.47757 6.73701 7.14078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.078 4.078 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.247 1.247 7 C -0.161 4.161 8 C -0.055 4.055 9 C -0.165 4.165 10 C 0.119 3.881 11 O -0.320 6.320 12 C 0.036 3.964 13 C 0.510 3.490 14 O -0.572 6.572 15 N -0.707 5.707 16 C 0.135 3.865 17 C -0.117 4.117 18 C -0.424 4.424 19 Si 1.057 2.943 20 C -0.408 4.408 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.112 4.112 24 C -0.426 4.426 25 C -0.408 4.408 26 C -0.112 4.112 27 C -0.201 4.201 28 C -0.089 4.089 29 H 0.388 0.612 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.421 0.579 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.072 0.928 52 H 0.096 0.904 53 H 0.080 0.920 54 H 0.095 0.905 55 H 0.161 0.839 56 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.941 7.620 3.111 9.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.188 4.188 3 Si 0.808 3.192 4 H -0.179 1.179 5 H -0.205 1.205 6 H -0.170 1.170 7 C -0.161 4.161 8 C -0.073 4.073 9 C -0.184 4.184 10 C 0.074 3.926 11 O -0.233 6.233 12 C -0.042 4.042 13 C 0.296 3.704 14 O -0.451 6.451 15 N -0.361 5.361 16 C 0.031 3.969 17 C -0.155 4.155 18 C -0.508 4.508 19 Si 1.247 2.753 20 C -0.494 4.494 21 C -0.149 4.149 22 C -0.173 4.173 23 C -0.150 4.150 24 C -0.510 4.510 25 C -0.495 4.495 26 C -0.149 4.149 27 C -0.220 4.220 28 C -0.107 4.107 29 H 0.237 0.763 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.259 0.741 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.091 0.909 52 H 0.114 0.886 53 H 0.099 0.901 54 H 0.113 0.887 55 H 0.179 0.821 56 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.099 7.094 2.622 8.603 hybrid contribution -0.402 -0.403 0.483 0.747 sum 3.698 6.690 3.106 8.251 Atomic orbital electron populations 1.86487 1.17706 1.81985 1.50067 1.25021 0.84754 1.10960 0.98112 0.85211 0.79705 0.74273 0.80016 1.17882 1.20466 1.17047 1.20383 1.02484 0.95046 0.98208 1.20950 0.96452 0.93894 0.96034 1.20664 1.02195 1.01103 0.94446 1.19230 0.94858 0.91862 0.86632 1.86134 1.69257 1.38360 1.29546 1.22758 0.99405 0.93640 0.88370 1.20573 0.77952 0.87995 0.83890 1.90763 1.55641 1.18850 1.79825 1.45854 1.55862 1.14615 1.19759 1.21126 0.94863 0.95052 0.85868 1.21629 0.97304 0.99476 0.97084 1.26501 1.18985 0.99688 1.05660 0.78608 0.64751 0.66242 0.65704 1.26290 1.00134 1.12227 1.10791 1.21278 0.98303 0.95940 0.99409 1.21537 1.01601 0.95414 0.98746 1.21269 0.97993 0.98875 0.96814 1.26480 1.02966 1.16447 1.05152 1.26217 1.10273 1.03007 1.09985 1.21520 0.94292 0.99099 1.00025 1.21456 1.06363 0.92882 1.01269 1.21090 0.96313 1.00204 0.93054 0.76272 0.86161 0.84203 0.85430 0.85737 0.85687 0.74090 0.91769 0.89240 0.94247 0.92122 0.90408 0.89492 0.90921 0.92164 0.90798 0.92143 0.92058 0.92838 0.90903 0.91254 0.91098 0.90876 0.88553 0.90144 0.88698 0.82114 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.25 12.83 -148.98 -1.91 -2.16 16 2 C -0.08 0.11 2.80 71.24 0.20 0.31 16 3 Si 0.98 -2.60 25.13 68.60 1.72 -0.87 16 4 H -0.25 0.51 7.11 99.48 0.71 1.22 16 5 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 6 H -0.25 0.91 7.04 99.48 0.70 1.61 16 7 C -0.16 -0.08 5.35 -19.85 -0.11 -0.18 16 8 C -0.06 -0.15 9.68 22.25 0.22 0.07 16 9 C -0.17 -0.86 9.99 22.36 0.22 -0.63 16 10 C 0.12 0.50 6.69 22.51 0.15 0.65 16 11 O -0.32 -2.18 9.67 -73.37 -0.71 -2.89 16 12 C 0.04 -0.09 5.22 71.23 0.37 0.29 16 13 C 0.51 1.88 7.70 87.65 0.67 2.56 16 14 O -0.57 -8.98 16.15 16.00 0.26 -8.72 16 15 N -0.71 2.59 5.03 -443.96 -2.23 0.36 16 16 C 0.14 -0.19 2.02 44.70 0.09 -0.10 16 17 C -0.12 0.03 5.20 30.79 0.16 0.19 16 18 C -0.42 0.07 4.97 72.33 0.36 0.43 16 19 Si 1.06 -5.52 9.19 68.60 0.63 -4.89 16 20 C -0.41 2.15 4.97 72.31 0.36 2.51 16 21 C -0.11 0.45 5.64 30.77 0.17 0.63 16 22 C -0.14 0.29 5.40 30.30 0.16 0.46 16 23 C -0.11 0.19 5.64 30.77 0.17 0.37 16 24 C -0.43 0.66 4.97 72.30 0.36 1.02 16 25 C -0.41 2.41 4.97 72.30 0.36 2.77 16 26 C -0.11 0.79 5.08 30.77 0.16 0.94 16 27 C -0.20 0.26 9.04 22.37 0.20 0.46 16 28 C -0.09 0.12 8.66 22.26 0.19 0.31 16 29 H 0.39 -2.33 8.70 -74.06 -0.64 -2.97 16 30 H 0.12 -0.31 7.96 -2.39 -0.02 -0.32 16 31 H 0.14 0.12 8.06 -2.91 -0.02 0.09 16 32 H 0.13 0.71 8.06 -2.91 -0.02 0.69 16 33 H 0.13 -1.10 7.65 -2.39 -0.02 -1.12 16 34 H 0.13 -1.11 7.67 -2.39 -0.02 -1.13 16 35 H 0.42 -5.05 8.60 -92.71 -0.80 -5.85 16 36 H 0.06 0.30 7.28 -2.39 -0.02 0.28 16 37 H 0.09 -0.46 7.71 -2.39 -0.02 -0.48 16 38 H 0.04 0.22 7.95 -2.39 -0.02 0.20 16 39 H 0.06 0.21 7.98 -2.39 -0.02 0.19 16 40 H 0.08 -0.03 7.98 -2.39 -0.02 -0.05 16 41 H 0.09 -0.65 7.98 -2.39 -0.02 -0.67 16 42 H 0.07 -0.30 7.98 -2.38 -0.02 -0.32 16 43 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.07 -0.45 7.72 -2.39 -0.02 -0.47 16 45 H 0.06 -0.08 7.88 -2.39 -0.02 -0.10 16 46 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 48 H 0.07 -0.27 7.72 -2.39 -0.02 -0.29 16 49 H 0.07 -0.03 7.98 -2.39 -0.02 -0.05 16 50 H 0.07 -0.07 7.98 -2.39 -0.02 -0.09 16 51 H 0.07 -0.29 7.98 -2.39 -0.02 -0.31 16 52 H 0.10 -0.77 7.98 -2.39 -0.02 -0.79 16 53 H 0.08 -0.64 8.13 -2.39 -0.02 -0.66 16 54 H 0.09 -1.05 7.71 -2.39 -0.02 -1.07 16 55 H 0.16 -1.35 6.30 -2.91 -0.02 -1.37 16 56 H 0.14 -0.74 4.86 -2.91 -0.01 -0.75 16 Total: 0.00 -23.27 431.47 2.42 -20.85 By element: Atomic # 1 Polarization: -14.90 SS G_CDS: 0.18 Total: -14.72 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 4.48 Total: 13.05 kcal Atomic # 7 Polarization: 2.59 SS G_CDS: -2.23 Total: 0.36 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -2.36 Total: -13.77 kcal Atomic # 14 Polarization: -8.12 SS G_CDS: 2.35 Total: -5.77 kcal Total: -23.27 2.42 -20.85 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739362_2989410.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.294 kcal (2) G-P(sol) polarization free energy of solvation -23.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds