Wall clock time and date at job start Tue Mar 9 2021 15:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86301 * 109.46889 * 2 1 4 4 H 1.48506 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47090 * 299.99837 * 3 2 1 6 6 H 1.48495 * 109.47292 * 60.00056 * 3 2 1 7 7 C 1.50697 * 109.47326 * 119.99968 * 2 1 3 8 8 C 1.38124 * 119.97100 * 64.99784 * 7 2 1 9 9 C 1.38752 * 119.94286 * 180.02562 * 8 7 2 10 10 O 1.35901 * 120.05590 * 180.02562 * 9 8 7 11 11 C 1.42900 * 116.99823 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.46826 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00339 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99945 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99963 * 180.02562 * 14 12 11 16 16 C 1.52549 * 108.99828 * 83.85131 * 15 14 12 17 17 C 1.53834 * 109.54132 * 197.94071 * 16 15 14 18 18 Si 1.86522 * 107.19009 * 301.72963 * 17 16 15 19 19 C 1.86519 * 110.12430 * 164.83945 * 18 17 16 20 20 C 1.53955 * 107.24051 * 164.83871 * 19 18 17 21 21 C 1.52554 * 109.47054 * 301.80640 * 20 19 18 22 22 C 1.52553 * 111.88642 * 77.29881 * 21 20 19 23 23 C 1.53953 * 109.47747 * 282.69198 * 22 21 20 24 24 C 1.86520 * 108.14770 * 44.43930 * 18 17 16 25 25 C 1.52558 * 108.99981 * 206.14661 * 15 14 12 26 26 C 1.38715 * 119.88973 * 0.27597 * 9 8 7 27 27 C 1.38171 * 119.94010 * 359.49186 * 26 9 8 28 28 C 1.38241 * 120.05724 * 0.48785 * 27 26 9 29 29 H 0.96700 * 113.99910 * 300.00146 * 1 2 3 30 30 H 1.08998 * 109.46925 * 239.99917 * 2 1 3 31 31 H 1.07996 * 120.02717 * 0.02562 * 8 7 2 32 32 H 1.08995 * 109.47192 * 59.99924 * 11 10 9 33 33 H 1.08998 * 109.47349 * 299.99008 * 11 10 9 34 34 H 0.97002 * 120.00490 * 359.97438 * 14 12 11 35 35 H 1.09002 * 108.98340 * 324.99920 * 15 14 12 36 36 H 1.09003 * 109.47550 * 317.84638 * 16 15 14 37 37 H 1.09009 * 109.47436 * 77.84414 * 16 15 14 38 38 H 1.08998 * 109.91712 * 182.31871 * 17 16 15 39 39 H 1.09003 * 109.99973 * 61.19028 * 17 16 15 40 40 H 1.08999 * 109.90331 * 284.27416 * 19 18 17 41 41 H 1.09006 * 109.90154 * 45.40317 * 19 18 17 42 42 H 1.09004 * 109.47046 * 181.80890 * 20 19 18 43 43 H 1.08999 * 109.46994 * 61.80250 * 20 19 18 44 44 H 1.08998 * 109.00198 * 316.67566 * 21 20 19 45 45 H 1.09004 * 108.93507 * 197.87555 * 21 20 19 46 46 H 1.09004 * 109.46937 * 162.69035 * 22 21 20 47 47 H 1.09002 * 109.46806 * 42.69711 * 22 21 20 48 48 H 1.09005 * 109.90200 * 298.76972 * 23 22 21 49 49 H 1.08992 * 109.90603 * 177.63058 * 23 22 21 50 50 H 1.08999 * 109.90258 * 196.13597 * 24 18 17 51 51 H 1.08999 * 109.96248 * 75.03484 * 24 18 17 52 52 H 1.09000 * 109.46619 * 282.15544 * 25 15 14 53 53 H 1.08998 * 109.46786 * 42.15406 * 25 15 14 54 54 H 1.08002 * 120.02892 * 179.72819 * 26 9 8 55 55 H 1.08004 * 119.96864 * 180.23069 * 27 26 9 56 56 H 1.07997 * 119.94439 * 179.73869 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 3.5349 1.7565 -0.0006 5 1 1.5549 2.4565 -1.2125 6 1 1.5549 2.4565 1.2124 7 6 1.9313 -0.7104 1.2304 8 6 1.6846 -2.0591 1.3976 9 6 2.1469 -2.7124 2.5310 10 8 1.9059 -4.0395 2.6976 11 6 2.4122 -4.6463 3.8881 12 6 2.0503 -6.1092 3.8993 13 8 1.4204 -6.5852 2.9786 14 7 2.4266 -6.8887 4.9324 15 6 2.0753 -8.3109 4.9429 16 6 3.1104 -9.0842 4.1318 17 6 2.5420 -10.4625 3.7527 18 14 2.1059 -11.3352 5.3425 19 6 1.0030 -12.7975 4.9901 20 6 0.9972 -13.6792 6.2522 21 6 2.4247 -14.1041 6.5821 22 6 3.2141 -12.9794 7.2448 23 6 3.6524 -11.9613 6.1764 24 6 1.2263 -10.1194 6.4502 25 6 2.0099 -8.7956 6.3879 26 6 2.8511 -2.0077 3.4962 27 6 3.0995 -0.6597 3.3219 28 6 2.6381 -0.0112 2.1916 29 1 -0.3933 0.4417 0.7650 30 1 1.7922 -0.5138 -0.8900 31 1 1.1322 -2.6045 0.6468 32 1 1.9754 -4.1577 4.7590 33 1 3.4966 -4.5398 3.9174 34 1 2.9308 -6.5082 5.6686 35 1 1.0960 -8.4377 4.4814 36 1 3.3490 -8.5297 3.2242 37 1 4.0147 -9.2142 4.7264 38 1 3.2918 -11.0363 3.2081 39 1 1.6494 -10.3416 3.1388 40 1 -0.0086 -12.4552 4.7719 41 1 1.3950 -13.3626 4.1444 42 1 0.3866 -14.5644 6.0741 43 1 0.5839 -13.1146 7.0879 44 1 2.9295 -14.3973 5.6616 45 1 2.3921 -14.9599 7.2566 46 1 4.0951 -13.3938 7.7350 47 1 2.5867 -12.4824 7.9848 48 1 4.2983 -12.4463 5.4445 49 1 4.1810 -11.1329 6.6480 50 1 1.2111 -10.4937 7.4738 51 1 0.2069 -9.9641 6.0969 52 1 3.0206 -8.9536 6.7642 53 1 1.5072 -8.0467 6.9999 54 1 3.2082 -2.5131 4.3814 55 1 3.6509 -0.1114 4.0714 56 1 2.8296 1.0434 2.0593 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739362_4860298.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:38:50 Heat of formation + Delta-G solvation = -131.201499 kcal Electronic energy + Delta-G solvation = -31847.037189 eV Core-core repulsion = 27650.965142 eV Total energy + Delta-G solvation = -4196.072047 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.198 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.60881 -40.77618 -39.11678 -37.85830 -37.30418 -37.19820 -34.14481 -32.48748 -32.05163 -31.86846 -31.65437 -29.50532 -27.43476 -26.85496 -26.06849 -23.71869 -23.61229 -23.26104 -22.62039 -21.55666 -21.35648 -21.02662 -19.33587 -18.51591 -17.91729 -17.44972 -17.33150 -17.11791 -16.74119 -16.33830 -16.19000 -16.03282 -15.66705 -15.56366 -15.14211 -15.06101 -14.98268 -14.95183 -14.80145 -14.42218 -14.04558 -13.80182 -13.69889 -13.46862 -13.36565 -13.24889 -13.14793 -12.99409 -12.78273 -12.59994 -12.56245 -12.29522 -12.19866 -12.16320 -12.07198 -11.96374 -11.94491 -11.88646 -11.56514 -11.54847 -11.42080 -10.99891 -10.47048 -10.34934 -10.18326 -10.08798 -10.05574 -9.94599 -9.30843 0.18766 0.36076 1.14736 1.43340 1.47488 1.48875 1.54617 1.86198 1.89065 1.92370 1.97292 2.58736 2.64854 2.67202 3.49774 3.54876 3.68539 3.75077 3.83925 3.98189 4.00702 4.04252 4.07691 4.10239 4.13220 4.19263 4.20569 4.31165 4.35267 4.36220 4.49667 4.51329 4.54378 4.64035 4.64641 4.66319 4.80657 4.82438 4.85046 4.96644 4.96698 5.03704 5.14464 5.21535 5.22120 5.23828 5.25223 5.28963 5.33405 5.34641 5.41731 5.41788 5.43299 5.49151 5.49422 5.53698 5.66519 5.68598 6.26788 6.48130 6.67971 7.14121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.091 4.091 3 Si 0.997 3.003 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.084 4.084 8 C -0.145 4.145 9 C 0.114 3.886 10 O -0.322 6.322 11 C 0.037 3.963 12 C 0.509 3.491 13 O -0.573 6.573 14 N -0.707 5.707 15 C 0.135 3.865 16 C -0.116 4.116 17 C -0.425 4.425 18 Si 1.057 2.943 19 C -0.426 4.426 20 C -0.112 4.112 21 C -0.135 4.135 22 C -0.112 4.112 23 C -0.407 4.407 24 C -0.408 4.408 25 C -0.112 4.112 26 C -0.202 4.202 27 C -0.071 4.071 28 C -0.171 4.171 29 H 0.389 0.611 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.421 0.579 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.087 0.913 50 H 0.096 0.904 51 H 0.072 0.928 52 H 0.095 0.905 53 H 0.080 0.920 54 H 0.161 0.839 55 H 0.160 0.840 56 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 1.862 9.045 10.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.201 4.201 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.168 1.168 7 C -0.084 4.084 8 C -0.164 4.164 9 C 0.069 3.931 10 O -0.236 6.236 11 C -0.040 4.040 12 C 0.295 3.705 13 O -0.451 6.451 14 N -0.361 5.361 15 C 0.031 3.969 16 C -0.155 4.155 17 C -0.509 4.509 18 Si 1.247 2.753 19 C -0.511 4.511 20 C -0.149 4.149 21 C -0.173 4.173 22 C -0.149 4.149 23 C -0.494 4.494 24 C -0.495 4.495 25 C -0.149 4.149 26 C -0.221 4.221 27 C -0.089 4.089 28 C -0.188 4.188 29 H 0.238 0.762 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.259 0.741 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.105 0.895 50 H 0.115 0.885 51 H 0.091 0.909 52 H 0.113 0.887 53 H 0.099 0.901 54 H 0.179 0.821 55 H 0.177 0.823 56 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.839 1.907 7.699 9.291 hybrid contribution -0.264 -0.409 0.146 0.508 sum 4.574 1.499 7.845 9.204 Atomic orbital electron populations 1.86500 1.17579 1.82088 1.50033 1.25261 0.84938 1.11849 0.98009 0.85016 0.79709 0.73195 0.80085 1.17709 1.20337 1.16769 1.20213 0.98015 0.93163 0.97032 1.20316 1.03976 0.94442 0.97658 1.19230 0.96186 0.82329 0.95380 1.86131 1.74610 1.20789 1.42039 1.22745 1.02529 0.90162 0.88588 1.20592 0.78951 0.88602 0.82323 1.90765 1.41043 1.76078 1.37262 1.45848 1.57498 1.09651 1.23055 1.21127 0.98707 0.79161 0.97915 1.21594 0.98917 0.95519 0.99451 1.26479 1.04366 1.02941 1.17093 0.78613 0.66788 0.64937 0.64988 1.26482 1.10319 1.13797 1.00457 1.21273 0.96588 0.99535 0.97553 1.21539 0.95738 0.98972 1.01052 1.21276 0.99830 0.95942 0.97863 1.26281 1.14139 1.03933 1.05051 1.26216 1.05711 1.06192 1.11363 1.21522 1.02761 0.97835 0.92804 1.21618 1.03692 0.96223 1.00543 1.21291 0.96851 0.93672 0.97086 1.21241 1.01461 1.00680 0.95464 0.76171 0.86450 0.86509 0.85680 0.85740 0.74064 0.91841 0.94327 0.89203 0.90414 0.92179 0.91123 0.91268 0.92838 0.90888 0.92152 0.92040 0.92137 0.90779 0.90917 0.89462 0.88509 0.90895 0.88656 0.90112 0.82148 0.82256 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.94 12.83 -148.98 -1.91 -3.85 16 2 C -0.09 -0.13 2.80 71.23 0.20 0.07 16 3 Si 1.00 -1.09 25.14 68.60 1.72 0.64 16 4 H -0.25 0.17 7.11 99.48 0.71 0.87 16 5 H -0.28 -0.76 7.11 99.48 0.71 -0.05 16 6 H -0.24 0.59 7.04 99.48 0.70 1.29 16 7 C -0.08 -0.26 5.35 -19.88 -0.11 -0.36 16 8 C -0.15 -1.03 9.62 22.37 0.22 -0.81 16 9 C 0.11 0.59 6.69 22.51 0.15 0.74 16 10 O -0.32 -2.58 9.67 -73.40 -0.71 -3.29 16 11 C 0.04 -0.07 5.22 71.24 0.37 0.31 16 12 C 0.51 2.22 7.70 87.66 0.67 2.89 16 13 O -0.57 -9.50 16.15 16.00 0.26 -9.24 16 14 N -0.71 2.28 5.03 -443.93 -2.23 0.05 16 15 C 0.14 -0.13 2.02 44.69 0.09 -0.04 16 16 C -0.12 -0.02 5.19 30.73 0.16 0.14 16 17 C -0.42 -0.12 4.97 72.26 0.36 0.24 16 18 Si 1.06 -5.22 9.19 68.60 0.63 -4.59 16 19 C -0.43 0.54 4.97 72.30 0.36 0.90 16 20 C -0.11 0.17 5.64 30.77 0.17 0.34 16 21 C -0.14 0.27 5.40 30.30 0.16 0.44 16 22 C -0.11 0.44 5.64 30.77 0.17 0.61 16 23 C -0.41 2.08 4.97 72.30 0.36 2.44 16 24 C -0.41 2.31 4.97 72.30 0.36 2.67 16 25 C -0.11 0.76 5.08 30.77 0.16 0.91 16 26 C -0.20 0.33 9.04 22.37 0.20 0.53 16 27 C -0.07 0.19 10.04 22.25 0.22 0.42 16 28 C -0.17 0.04 8.67 22.28 0.19 0.23 16 29 H 0.39 -1.38 8.70 -74.06 -0.64 -2.02 16 30 H 0.12 0.12 7.96 -2.39 -0.02 0.10 16 31 H 0.12 1.16 8.06 -2.91 -0.02 1.13 16 32 H 0.13 -1.06 7.65 -2.39 -0.02 -1.08 16 33 H 0.13 -1.04 7.67 -2.39 -0.02 -1.05 16 34 H 0.42 -4.93 8.59 -92.71 -0.80 -5.72 16 35 H 0.06 0.33 7.29 -2.39 -0.02 0.31 16 36 H 0.04 0.24 7.95 -2.39 -0.02 0.22 16 37 H 0.09 -0.43 7.71 -2.38 -0.02 -0.45 16 38 H 0.08 0.00 7.98 -2.39 -0.02 -0.02 16 39 H 0.06 0.24 7.98 -2.39 -0.02 0.22 16 40 H 0.07 -0.04 7.98 -2.39 -0.02 -0.06 16 41 H 0.07 -0.01 7.98 -2.38 -0.02 -0.03 16 42 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 43 H 0.07 -0.26 7.72 -2.39 -0.02 -0.28 16 44 H 0.06 -0.07 7.88 -2.39 -0.02 -0.09 16 45 H 0.06 -0.13 8.14 -2.38 -0.02 -0.14 16 46 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.07 -0.45 7.72 -2.39 -0.02 -0.46 16 48 H 0.07 -0.29 7.98 -2.38 -0.02 -0.31 16 49 H 0.09 -0.65 7.98 -2.39 -0.02 -0.67 16 50 H 0.10 -0.76 7.98 -2.39 -0.02 -0.78 16 51 H 0.07 -0.26 7.98 -2.39 -0.02 -0.28 16 52 H 0.09 -1.04 7.71 -2.39 -0.02 -1.06 16 53 H 0.08 -0.63 8.13 -2.39 -0.02 -0.65 16 54 H 0.16 -1.40 6.30 -2.91 -0.02 -1.42 16 55 H 0.16 -1.40 8.06 -2.91 -0.02 -1.42 16 56 H 0.14 -0.49 4.86 -2.91 -0.01 -0.51 16 Total: 0.00 -24.71 431.47 2.42 -22.30 By element: Atomic # 1 Polarization: -14.85 SS G_CDS: 0.18 Total: -14.67 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 4.48 Total: 12.66 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -2.23 Total: 0.05 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -2.36 Total: -16.38 kcal Atomic # 14 Polarization: -6.31 SS G_CDS: 2.36 Total: -3.95 kcal Total: -24.71 2.42 -22.30 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739362_4860298.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.905 kcal (2) G-P(sol) polarization free energy of solvation -24.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds