Wall clock time and date at job start Tue Mar 9 2021 12:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47096 * 2 1 4 4 C 1.35908 * 116.99969 * 84.32540 * 3 2 1 5 5 C 1.38733 * 120.05490 * 174.20931 * 4 3 2 6 6 C 1.38141 * 119.94289 * 179.74300 * 5 4 3 7 7 C 1.38268 * 120.05453 * 0.50665 * 6 5 4 8 8 C 1.50698 * 119.94193 * 179.74458 * 7 6 5 9 9 O 1.42904 * 109.47005 * 245.02161 * 8 7 6 10 10 Si 1.86293 * 109.47403 * 5.02413 * 8 7 6 11 11 H 1.48497 * 109.47367 * 60.00033 * 10 8 7 12 12 H 1.48502 * 109.47497 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47220 * 299.99788 * 10 8 7 14 14 C 1.38266 * 120.11120 * 359.76787 * 7 6 5 15 15 C 1.38146 * 120.05577 * 359.97438 * 14 7 6 16 16 C 1.50700 * 109.47538 * 239.99811 * 2 1 3 17 17 O 1.21287 * 119.99750 * 109.31653 * 16 2 1 18 18 N 1.34769 * 120.00181 * 289.32137 * 16 2 1 19 19 C 1.46352 * 120.53226 * 354.70210 * 18 16 2 20 20 C 1.52503 * 111.69106 * 250.91768 * 19 18 16 21 21 C 1.53643 * 110.12313 * 288.73569 * 20 19 18 22 22 Si 1.87455 * 107.32568 * 60.33773 * 21 20 19 23 23 C 1.86299 * 110.01731 * 72.58779 * 22 21 20 24 24 C 1.86302 * 110.01382 * 194.01685 * 22 21 20 25 25 C 1.47791 * 120.53699 * 174.72828 * 18 16 2 26 26 H 1.09002 * 109.46807 * 173.89092 * 1 2 3 27 27 H 1.08999 * 109.47153 * 293.88515 * 1 2 3 28 28 H 1.08995 * 109.47091 * 53.88627 * 1 2 3 29 29 H 1.08997 * 109.47411 * 119.99703 * 2 1 3 30 30 H 1.07996 * 120.02839 * 359.97438 * 5 4 3 31 31 H 1.08006 * 119.97295 * 180.23101 * 6 5 4 32 32 H 1.09004 * 109.47019 * 125.02425 * 8 7 6 33 33 H 0.96696 * 114.00172 * 60.00537 * 9 8 7 34 34 H 1.08004 * 119.96725 * 179.97438 * 14 7 6 35 35 H 1.07999 * 120.02165 * 179.97438 * 15 14 7 36 36 H 1.08998 * 109.03369 * 130.34544 * 19 18 16 37 37 H 1.08998 * 109.03211 * 11.48842 * 19 18 16 38 38 H 1.08994 * 109.36088 * 168.52884 * 20 19 18 39 39 H 1.09005 * 109.25315 * 48.86264 * 20 19 18 40 40 H 1.09001 * 109.88412 * 300.87797 * 21 20 19 41 41 H 1.09004 * 109.94820 * 179.83037 * 21 20 19 42 42 H 1.09003 * 109.47454 * 59.99604 * 23 22 21 43 43 H 1.08995 * 109.47396 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.47155 * 300.00087 * 23 22 21 45 45 H 1.09002 * 109.47004 * 59.99842 * 24 22 21 46 46 H 1.09000 * 109.47324 * 179.97438 * 24 22 21 47 47 H 1.08997 * 109.47445 * 300.00272 * 24 22 21 48 48 H 1.08999 * 110.07743 * 6.03833 * 25 18 16 49 49 H 1.09003 * 110.08106 * 244.43619 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0991 1.9689 1.2050 5 6 2.6656 3.2322 1.2933 6 6 2.7539 3.8642 2.5186 7 6 2.2878 3.2343 3.6578 8 6 2.3906 3.9236 4.9939 9 8 3.2799 3.1920 5.8401 10 14 3.0438 5.6515 4.7526 11 1 2.1197 6.4118 3.8733 12 1 3.1457 6.3306 6.0693 13 1 4.3874 5.5895 4.1230 14 6 1.7280 1.9729 3.5732 15 6 1.6325 1.3389 2.3495 16 6 2.0324 -0.7104 -1.2304 17 8 2.5622 -0.0799 -2.1208 18 7 1.8930 -2.0463 -1.3414 19 6 1.3615 -2.8334 -0.2279 20 6 2.4417 -3.6916 0.4220 21 6 2.8354 -4.8445 -0.5143 22 14 3.4909 -4.0805 -2.0956 23 6 5.1724 -3.3369 -1.7952 24 6 3.5929 -5.3729 -3.4335 25 6 2.2750 -2.7401 -2.5892 26 1 -0.3633 -1.0219 -0.1094 27 1 -0.3633 0.4161 0.9396 28 1 -0.3633 0.6057 -0.8302 29 1 1.8934 -0.5138 0.8900 30 1 3.0338 3.7228 0.4045 31 1 3.1914 4.8492 2.5873 32 1 1.4045 3.9692 5.4561 33 1 4.1780 3.1114 5.4909 34 1 1.3650 1.4828 4.4646 35 1 1.1955 0.3534 2.2841 36 1 0.5672 -3.4816 -0.5981 37 1 0.9471 -2.1570 0.5196 38 1 2.0636 -4.1000 1.3591 39 1 3.3176 -3.0749 0.6238 40 1 1.9620 -5.4587 -0.7334 41 1 3.6096 -5.4541 -0.0483 42 1 5.8593 -4.1147 -1.4613 43 1 5.5451 -2.8960 -2.7197 44 1 5.0970 -2.5655 -1.0289 45 1 2.6003 -5.7836 -3.6184 46 1 3.9743 -4.9194 -4.3484 47 1 4.2633 -6.1718 -3.1167 48 1 2.7490 -2.0396 -3.2767 49 1 1.3954 -3.1854 -3.0541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:55 Heat of formation + Delta-G solvation = -104.919507 kcal Electronic energy + Delta-G solvation = -27785.811097 eV Core-core repulsion = 24030.180101 eV Total energy + Delta-G solvation = -3755.630996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.92583 -40.74259 -39.12058 -37.55525 -37.14690 -33.64904 -33.19316 -32.09235 -31.49281 -29.40463 -28.44631 -27.96746 -27.05524 -26.45191 -24.88837 -23.96481 -22.69635 -22.19260 -20.28863 -19.60181 -18.41009 -18.02964 -17.51018 -17.04516 -16.64358 -16.46183 -16.17915 -16.06307 -15.54958 -15.23273 -15.08514 -14.89968 -14.80995 -14.47729 -14.25129 -14.15506 -13.96615 -13.89207 -13.70830 -13.52382 -13.34550 -13.32885 -13.24685 -13.13645 -13.07034 -12.88349 -12.24600 -12.22421 -12.11431 -12.09064 -12.04228 -11.93918 -11.56253 -11.51305 -10.93118 -10.76793 -10.37848 -10.34795 -10.07166 -9.36677 -9.25365 0.20970 0.29976 1.20378 1.27695 1.41364 1.45096 1.52673 1.70394 1.87014 1.92022 1.97630 2.39945 2.55296 2.62363 3.23423 3.54796 3.58931 3.71067 3.76085 3.83910 3.89429 3.93524 4.11325 4.23228 4.28346 4.43430 4.46415 4.52075 4.57464 4.61397 4.66230 4.67105 4.70239 4.70839 4.81388 4.83688 4.86690 4.96153 4.96293 5.00208 5.09292 5.15181 5.26765 5.29406 5.37181 5.45638 5.45868 5.58223 5.61727 5.66200 6.15292 6.33046 6.72243 6.99404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.064 3.936 3 O -0.315 6.315 4 C 0.118 3.882 5 C -0.163 4.163 6 C -0.090 4.090 7 C -0.160 4.160 8 C -0.067 4.067 9 O -0.551 6.551 10 Si 0.973 3.027 11 H -0.261 1.261 12 H -0.275 1.275 13 H -0.256 1.256 14 C -0.049 4.049 15 C -0.206 4.206 16 C 0.506 3.494 17 O -0.575 6.575 18 N -0.586 5.586 19 C 0.077 3.923 20 C -0.131 4.131 21 C -0.400 4.400 22 Si 1.064 2.936 23 C -0.469 4.469 24 C -0.454 4.454 25 C -0.204 4.204 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.388 0.612 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 -7.029 4.124 8.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.005 3.995 3 O -0.229 6.229 4 C 0.073 3.927 5 C -0.182 4.182 6 C -0.107 4.107 7 C -0.160 4.160 8 C -0.178 4.178 9 O -0.358 6.358 10 Si 0.798 3.202 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.180 1.180 14 C -0.067 4.067 15 C -0.225 4.225 16 C 0.293 3.707 17 O -0.454 6.454 18 N -0.319 5.319 19 C -0.044 4.044 20 C -0.169 4.169 21 C -0.488 4.488 22 Si 1.254 2.746 23 C -0.574 4.574 24 C -0.563 4.563 25 C -0.369 4.369 26 H 0.125 0.875 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.237 0.763 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.104 -5.776 3.682 7.521 hybrid contribution 0.567 0.153 -0.846 1.030 sum -2.537 -5.623 2.836 6.790 Atomic orbital electron populations 1.22453 0.90566 1.05495 1.04805 1.22435 0.97214 0.81918 0.97947 1.86198 1.81444 1.26995 1.28230 1.19283 0.95920 0.93064 0.84446 1.20525 1.04241 0.94345 0.99080 1.20995 0.98423 0.99656 0.91656 1.20364 1.03254 0.97041 0.95391 1.24830 0.99129 1.04520 0.89350 1.86479 1.25068 1.77115 1.47163 0.85356 0.80354 0.75369 0.79072 1.18522 1.19981 1.18018 1.21051 0.94824 0.93365 0.97428 1.21568 1.06333 1.02671 0.91888 1.20630 0.79001 0.82985 0.88062 1.90707 1.44706 1.66692 1.43336 1.47889 1.63500 1.04625 1.15886 1.22116 0.97713 0.96068 0.88497 1.21605 0.98623 0.96622 1.00045 1.26143 1.07345 1.02745 1.12538 0.78822 0.63801 0.63953 0.67991 1.26411 1.20137 1.06872 1.03954 1.26133 1.05415 1.12231 1.12473 1.27269 1.11671 1.09000 0.88993 0.87470 0.88704 0.92363 0.85823 0.85375 0.84797 0.85387 0.76300 0.83243 0.82590 0.87718 0.87830 0.88137 0.92361 0.88481 0.89521 0.90441 0.92491 0.92918 0.90037 0.91698 0.90423 0.90908 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.58 8.76 71.98 0.63 1.21 16 2 C 0.06 0.12 1.78 29.85 0.05 0.18 16 3 O -0.32 -2.92 9.36 -73.69 -0.69 -3.61 16 4 C 0.12 0.66 6.59 22.51 0.15 0.81 16 5 C -0.16 -0.97 9.99 22.36 0.22 -0.75 16 6 C -0.09 -0.23 8.66 22.25 0.19 -0.04 16 7 C -0.16 -0.06 5.35 -19.85 -0.11 -0.17 16 8 C -0.07 0.12 2.80 71.24 0.20 0.32 16 9 O -0.55 0.41 12.83 -148.98 -1.91 -1.51 16 10 Si 0.97 -0.65 25.13 68.60 1.72 1.08 16 11 H -0.26 -0.28 7.11 99.48 0.71 0.43 16 12 H -0.27 -0.73 7.11 99.48 0.71 -0.02 16 13 H -0.26 0.03 7.04 99.48 0.70 0.73 16 14 C -0.05 0.05 9.68 22.25 0.22 0.26 16 15 C -0.21 0.07 8.28 22.36 0.19 0.25 16 16 C 0.51 3.77 7.02 87.66 0.62 4.39 16 17 O -0.58 -10.69 15.97 15.77 0.25 -10.44 16 18 N -0.59 0.07 2.63 -625.83 -1.64 -1.58 16 19 C 0.08 -0.66 4.89 86.24 0.42 -0.23 16 20 C -0.13 1.18 5.69 30.65 0.17 1.36 16 21 C -0.40 3.67 5.03 72.20 0.36 4.03 16 22 Si 1.06 -6.33 11.99 68.60 0.82 -5.51 16 23 C -0.47 -0.18 8.65 113.37 0.98 0.81 16 24 C -0.45 2.44 8.65 113.37 0.98 3.43 16 25 C -0.20 0.08 5.44 127.52 0.69 0.78 16 26 H 0.11 -0.92 6.22 -2.39 -0.01 -0.94 16 27 H 0.09 -0.59 6.77 -2.39 -0.02 -0.61 16 28 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.12 -0.54 5.42 -2.39 -0.01 -0.56 16 30 H 0.13 0.79 8.06 -2.91 -0.02 0.77 16 31 H 0.13 0.01 4.86 -2.91 -0.01 0.00 16 32 H 0.13 -0.52 7.96 -2.39 -0.02 -0.54 16 33 H 0.39 -2.50 8.70 -74.06 -0.64 -3.14 16 34 H 0.15 -0.70 8.06 -2.91 -0.02 -0.72 16 35 H 0.16 -0.99 5.32 -2.91 -0.02 -1.01 16 36 H 0.10 -1.27 8.11 -2.39 -0.02 -1.29 16 37 H 0.10 -1.24 4.52 -2.39 -0.01 -1.26 16 38 H 0.10 -1.22 8.14 -2.39 -0.02 -1.24 16 39 H 0.06 -0.38 7.89 -2.38 -0.02 -0.40 16 40 H 0.10 -1.12 7.99 -2.39 -0.02 -1.14 16 41 H 0.09 -0.80 7.99 -2.38 -0.02 -0.82 16 42 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 43 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 44 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 45 H 0.08 -0.56 7.96 -2.39 -0.02 -0.58 16 46 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 47 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 48 H 0.07 0.44 6.90 -2.39 -0.02 0.42 16 49 H 0.09 -0.36 8.00 -2.39 -0.02 -0.38 16 Total: 0.00 -23.30 383.25 5.58 -17.72 By element: Atomic # 1 Polarization: -13.83 SS G_CDS: 1.05 Total: -12.77 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.97 Total: 16.62 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -1.64 Total: -1.58 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -2.35 Total: -15.56 kcal Atomic # 14 Polarization: -6.98 SS G_CDS: 2.55 Total: -4.43 kcal Total: -23.30 5.58 -17.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.201 kcal (2) G-P(sol) polarization free energy of solvation -23.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds