Wall clock time and date at job start Tue Mar 9 2021 13:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 110.07808 * 2 1 4 4 C 1.87459 * 110.01517 * 121.40112 * 2 1 3 5 5 C 1.53649 * 107.32434 * 165.98003 * 4 2 1 6 6 C 1.52509 * 110.12283 * 299.66055 * 5 4 2 7 7 N 1.46341 * 111.69012 * 71.27010 * 6 5 4 8 8 C 1.34767 * 120.53510 * 108.83127 * 7 6 5 9 9 O 1.21587 * 120.00285 * 174.20719 * 8 7 6 10 10 C 1.47576 * 120.00265 * 354.20540 * 8 7 6 11 11 C 1.40207 * 119.83243 * 330.61882 * 10 8 7 12 12 C 1.36233 * 120.37888 * 179.75178 * 11 10 8 13 13 C 1.39872 * 119.95934 * 0.51986 * 12 11 10 14 14 C 1.46258 * 133.84289 * 179.76400 * 13 12 11 15 15 C 1.50694 * 126.48449 * 359.95407 * 14 13 12 16 16 O 1.42910 * 109.47157 * 285.00276 * 15 14 13 17 17 Si 1.86303 * 109.47399 * 165.00171 * 15 14 13 18 18 H 1.48500 * 109.47040 * 59.99931 * 17 15 14 19 19 H 1.48501 * 109.46934 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47112 * 300.00122 * 17 15 14 21 21 C 1.34454 * 107.03629 * 179.97438 * 14 13 12 22 22 N 1.36563 * 109.98673 * 0.02562 * 21 14 13 23 23 C 1.37835 * 109.85659 * 359.97438 * 22 21 14 24 24 C 1.38650 * 133.37327 * 180.02562 * 23 22 21 25 25 C 1.47793 * 118.92953 * 289.10251 * 7 6 5 26 26 H 1.09003 * 109.46779 * 298.60101 * 1 2 3 27 27 H 1.09000 * 109.46726 * 58.60227 * 1 2 3 28 28 H 1.08997 * 109.46959 * 178.59826 * 1 2 3 29 29 H 1.08994 * 109.47349 * 181.39712 * 3 2 1 30 30 H 1.09003 * 109.47159 * 301.40342 * 3 2 1 31 31 H 1.09004 * 109.46397 * 61.39627 * 3 2 1 32 32 H 1.09002 * 109.88619 * 46.53040 * 4 2 1 33 33 H 1.09000 * 109.88484 * 285.43169 * 4 2 1 34 34 H 1.08996 * 109.36074 * 179.45600 * 5 4 2 35 35 H 1.09008 * 109.36150 * 59.85999 * 5 4 2 36 36 H 1.08996 * 109.03983 * 310.69353 * 6 5 4 37 37 H 1.09001 * 109.03193 * 191.83495 * 6 5 4 38 38 H 1.07996 * 119.80814 * 0.02562 * 11 10 8 39 39 H 1.07997 * 120.02013 * 180.22938 * 12 11 10 40 40 H 1.08999 * 109.47134 * 44.99996 * 15 14 13 41 41 H 0.96698 * 113.99620 * 299.99807 * 16 15 14 42 42 H 1.08001 * 125.01291 * 179.97438 * 21 14 13 43 43 H 0.97002 * 125.07202 * 180.02562 * 22 21 14 44 44 H 1.07992 * 120.16699 * 359.95735 * 24 23 22 45 45 H 1.09005 * 110.08071 * 173.93900 * 25 7 6 46 46 H 1.09004 * 110.08178 * 295.53986 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5026 1.7498 0.0000 4 6 2.5046 -0.9177 1.5034 5 6 3.9984 -1.1912 1.2695 6 6 4.1860 -2.0448 0.0196 7 7 3.9034 -1.2873 -1.2001 8 6 4.9027 -0.9273 -2.0296 9 8 4.6486 -0.3913 -3.0909 10 6 6.3055 -1.1835 -1.6497 11 6 6.6690 -1.2032 -0.2957 12 6 7.9598 -1.4436 0.0677 13 6 8.9326 -1.6618 -0.9134 14 6 10.3687 -1.9356 -0.8729 15 6 11.2230 -2.0583 0.3625 16 8 11.4581 -0.7593 0.9099 17 14 12.8503 -2.8480 -0.0836 18 1 13.5499 -2.0068 -1.0878 19 1 13.6923 -2.9682 1.1337 20 1 12.6061 -4.1977 -0.6525 21 6 10.7827 -2.0569 -2.1463 22 7 9.7296 -1.8825 -2.9981 23 6 8.5801 -1.6388 -2.2777 24 6 7.2632 -1.3984 -2.6385 25 6 2.5051 -0.9182 -1.5046 26 1 -0.3633 0.4920 0.9023 27 1 -0.3633 0.5354 -0.8772 28 1 -0.3633 -1.0273 -0.0251 29 1 3.5922 1.7384 -0.0251 30 1 2.1244 2.2749 -0.8772 31 1 2.1652 2.2598 0.9023 32 1 1.9690 -1.8599 1.6192 33 1 2.3753 -0.3045 2.3952 34 1 4.4087 -1.7173 2.1314 35 1 4.5236 -0.2445 1.1427 36 1 3.5141 -2.9015 0.0699 37 1 5.2149 -2.4032 -0.0149 38 1 5.9206 -1.0311 0.4636 39 1 8.2327 -1.4611 1.1125 40 1 10.7095 -2.6756 1.0995 41 1 11.9128 -0.1550 0.3074 42 1 11.7986 -2.2611 -2.4509 43 1 9.7825 -1.9247 -3.9658 44 1 6.9812 -1.3778 -3.6808 45 1 2.4712 -0.2706 -2.3808 46 1 1.9104 -1.8152 -1.6776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:09 Heat of formation + Delta-G solvation = -24.363498 kcal Electronic energy + Delta-G solvation = -26672.707491 eV Core-core repulsion = 23072.911285 eV Total energy + Delta-G solvation = -3599.796206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.52570 -41.14831 -37.98511 -37.69065 -37.30832 -33.38551 -33.23992 -31.11941 -30.74751 -29.32182 -28.40580 -27.77107 -26.90525 -26.27875 -24.15851 -23.39068 -22.65775 -20.83558 -20.24183 -19.22099 -18.45089 -17.70245 -17.32620 -16.98582 -16.44362 -16.09919 -15.87399 -15.60392 -15.21512 -15.07748 -14.98446 -14.77258 -14.65914 -14.45487 -14.10473 -14.07460 -13.97323 -13.85424 -13.46375 -13.22757 -13.12752 -13.09920 -12.85832 -12.62786 -12.40131 -12.25066 -12.04069 -11.95828 -11.84454 -11.66602 -11.54080 -10.99475 -10.79604 -10.77863 -10.32896 -10.24833 -9.42041 -9.24280 -8.77789 -0.29157 0.37044 1.28203 1.35820 1.53171 1.58648 1.64180 1.72933 1.84574 1.90542 2.01477 2.08296 2.24995 2.57338 2.80216 3.43932 3.64073 3.71023 3.84664 3.89202 3.96371 4.12079 4.18030 4.29332 4.43344 4.48016 4.53032 4.57395 4.62054 4.69452 4.72301 4.75093 4.81438 4.83800 4.85756 4.92556 4.97770 4.99387 5.08155 5.22098 5.30658 5.39626 5.43155 5.49628 5.53277 5.60879 5.62778 5.63987 5.98521 6.29724 6.49868 6.84835 7.06336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.063 2.937 3 C -0.466 4.466 4 C -0.398 4.398 5 C -0.136 4.136 6 C 0.069 3.931 7 N -0.584 5.584 8 C 0.549 3.451 9 O -0.590 6.590 10 C -0.132 4.132 11 C -0.130 4.130 12 C -0.077 4.077 13 C -0.080 4.080 14 C -0.224 4.224 15 C -0.046 4.046 16 O -0.557 6.557 17 Si 0.988 3.012 18 H -0.242 1.242 19 H -0.277 1.277 20 H -0.259 1.259 21 C 0.076 3.924 22 N -0.579 5.579 23 C 0.069 3.931 24 C -0.076 4.076 25 C -0.207 4.207 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.167 0.833 39 H 0.147 0.853 40 H 0.115 0.885 41 H 0.386 0.614 42 H 0.202 0.798 43 H 0.432 0.568 44 H 0.122 0.878 45 H 0.074 0.926 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -3.142 3.901 5.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.254 2.746 3 C -0.571 4.571 4 C -0.486 4.486 5 C -0.174 4.174 6 C -0.053 4.053 7 N -0.315 5.315 8 C 0.339 3.661 9 O -0.472 6.472 10 C -0.136 4.136 11 C -0.149 4.149 12 C -0.096 4.096 13 C -0.085 4.085 14 C -0.231 4.231 15 C -0.156 4.156 16 O -0.364 6.364 17 Si 0.811 3.189 18 H -0.165 1.165 19 H -0.202 1.202 20 H -0.183 1.183 21 C -0.053 4.053 22 N -0.182 5.182 23 C -0.038 4.038 24 C -0.097 4.097 25 C -0.372 4.372 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.184 0.816 39 H 0.165 0.835 40 H 0.133 0.867 41 H 0.235 0.765 42 H 0.219 0.781 43 H 0.272 0.728 44 H 0.140 0.860 45 H 0.093 0.907 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.021 -3.533 3.442 5.331 hybrid contribution -0.218 0.571 -1.570 1.685 sum 1.803 -2.962 1.872 3.941 Atomic orbital electron populations 1.26115 1.19970 1.05194 1.04848 0.78842 0.66102 0.64975 0.64703 1.26349 1.05720 1.20642 1.04425 1.26143 0.99572 1.09103 1.13781 1.21694 0.97608 1.00676 0.97406 1.22357 1.04948 0.95044 0.82901 1.47825 1.06173 1.54584 1.22896 1.18620 0.86020 0.78320 0.83111 1.90732 1.85182 1.46216 1.25059 1.19472 0.92138 1.07292 0.94743 1.21604 0.97724 1.00948 0.94632 1.20479 0.91048 0.98334 0.99717 1.19527 0.94186 1.02758 0.92002 1.20897 0.92809 1.14255 0.95176 1.24403 1.06690 0.89831 0.94694 1.86484 1.81742 1.23634 1.44556 0.85196 0.74661 0.79356 0.79664 1.16549 1.20228 1.18303 1.22261 0.93634 1.00387 0.88989 1.41784 1.05406 1.61278 1.09771 1.18107 0.88273 1.05543 0.91907 1.20041 0.89518 1.00733 0.99431 1.27381 0.84619 1.08095 1.17074 0.90217 0.91566 0.90278 0.92594 0.92252 0.90164 0.88772 0.89017 0.87906 0.91340 0.88897 0.87516 0.81617 0.83490 0.86677 0.76526 0.78110 0.72779 0.86028 0.90719 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.00 8.65 113.37 0.98 2.98 16 2 Si 1.06 -4.90 11.99 68.60 0.82 -4.07 16 3 C -0.47 -0.18 8.65 113.37 0.98 0.80 16 4 C -0.40 2.92 5.03 72.20 0.36 3.28 16 5 C -0.14 0.84 4.52 30.65 0.14 0.98 16 6 C 0.07 -0.19 4.93 86.25 0.43 0.23 16 7 N -0.58 -2.46 2.63 -629.29 -1.65 -4.12 16 8 C 0.55 6.18 7.44 86.71 0.64 6.82 16 9 O -0.59 -11.56 16.12 -3.99 -0.06 -11.63 16 10 C -0.13 -1.04 5.43 -20.07 -0.11 -1.15 16 11 C -0.13 -0.35 7.32 22.28 0.16 -0.18 16 12 C -0.08 -0.20 10.03 22.20 0.22 0.03 16 13 C -0.08 -0.34 6.35 -20.14 -0.13 -0.47 16 14 C -0.22 -0.04 5.57 -18.65 -0.10 -0.14 16 15 C -0.05 0.10 3.06 71.23 0.22 0.32 16 16 O -0.56 0.04 12.88 -148.98 -1.92 -1.88 16 17 Si 0.99 -4.18 26.08 68.60 1.79 -2.39 16 18 H -0.24 1.49 7.03 99.48 0.70 2.19 16 19 H -0.28 -0.06 7.11 99.48 0.71 0.64 16 20 H -0.26 0.75 7.11 99.48 0.71 1.45 16 21 C 0.08 -0.24 10.43 83.09 0.87 0.63 16 22 N -0.58 0.68 6.07 -187.71 -1.14 -0.45 16 23 C 0.07 0.33 7.26 38.96 0.28 0.61 16 24 C -0.08 -0.60 9.60 22.63 0.22 -0.38 16 25 C -0.21 -0.49 5.42 127.52 0.69 0.21 16 26 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 27 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 28 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 29 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 30 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 31 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 32 H 0.09 -0.86 7.99 -2.39 -0.02 -0.88 16 33 H 0.09 -0.77 7.99 -2.39 -0.02 -0.79 16 34 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 35 H 0.07 -0.33 6.80 -2.38 -0.02 -0.35 16 36 H 0.09 -0.52 8.11 -2.39 -0.02 -0.54 16 37 H 0.11 -0.29 4.41 -2.39 -0.01 -0.30 16 38 H 0.17 -0.35 3.19 -2.91 -0.01 -0.36 16 39 H 0.15 -0.18 8.06 -2.91 -0.02 -0.20 16 40 H 0.12 -0.33 7.96 -2.39 -0.02 -0.35 16 41 H 0.39 -2.45 8.70 -74.06 -0.64 -3.09 16 42 H 0.20 -1.98 6.29 -2.91 -0.02 -2.00 16 43 H 0.43 -2.80 8.96 -92.71 -0.83 -3.63 16 44 H 0.12 1.05 7.89 -2.91 -0.02 1.02 16 45 H 0.07 0.58 6.94 -2.38 -0.02 0.56 16 46 H 0.08 -0.02 8.00 -2.38 -0.02 -0.04 16 Total: 0.00 -22.59 363.91 3.98 -18.61 By element: Atomic # 1 Polarization: -8.91 SS G_CDS: 0.29 Total: -8.62 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.85 Total: 14.56 kcal Atomic # 7 Polarization: -1.78 SS G_CDS: -2.79 Total: -4.57 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -1.98 Total: -13.51 kcal Atomic # 14 Polarization: -9.07 SS G_CDS: 2.61 Total: -6.46 kcal Total: -22.59 3.98 -18.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.757 kcal (2) G-P(sol) polarization free energy of solvation -22.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds