Wall clock time and date at job start Tue Mar 9 2021 13:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86309 * 110.07547 * 2 1 4 4 C 1.87457 * 110.01760 * 121.39859 * 2 1 3 5 5 C 1.53642 * 107.32765 * 72.58335 * 4 2 1 6 6 C 1.52513 * 110.11939 * 60.33779 * 5 4 2 7 7 N 1.46337 * 111.69092 * 288.73731 * 6 5 4 8 8 C 1.34781 * 120.52883 * 250.91137 * 7 6 5 9 9 O 1.21689 * 120.00161 * 354.89878 * 8 7 6 10 10 C 1.46434 * 119.99617 * 174.88969 * 8 7 6 11 11 C 1.34806 * 119.99573 * 185.18445 * 10 8 7 12 12 C 1.47214 * 119.99604 * 179.97438 * 11 10 8 13 13 C 1.39829 * 120.16995 * 359.73007 * 12 11 10 14 14 C 1.37893 * 119.82703 * 179.78497 * 13 12 11 15 15 C 1.38400 * 120.16826 * 0.46929 * 14 13 12 16 16 C 1.50698 * 119.83131 * 179.76547 * 15 14 13 17 17 O 1.42905 * 109.46985 * 245.02144 * 16 15 14 18 18 Si 1.86299 * 109.46795 * 5.01706 * 16 15 14 19 19 H 1.48497 * 109.47295 * 60.00283 * 18 16 15 20 20 H 1.48502 * 109.47506 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47413 * 300.00423 * 18 16 15 22 22 C 1.38406 * 120.34493 * 359.77861 * 15 14 13 23 23 C 1.37891 * 120.17135 * 359.97438 * 22 15 14 24 24 C 1.47784 * 118.93516 * 70.89614 * 7 6 5 25 25 H 1.09004 * 109.47464 * 298.59874 * 1 2 3 26 26 H 1.09007 * 109.47406 * 58.60431 * 1 2 3 27 27 H 1.09003 * 109.47218 * 178.59983 * 1 2 3 28 28 H 1.08998 * 109.47159 * 181.39320 * 3 2 1 29 29 H 1.09002 * 109.46916 * 301.40051 * 3 2 1 30 30 H 1.09002 * 109.46742 * 61.39847 * 3 2 1 31 31 H 1.08996 * 109.88739 * 192.04282 * 4 2 1 32 32 H 1.09002 * 109.88108 * 313.05377 * 4 2 1 33 33 H 1.08995 * 109.36427 * 180.53840 * 5 4 2 34 34 H 1.08998 * 109.36014 * 300.27877 * 5 4 2 35 35 H 1.09000 * 109.03175 * 49.30963 * 6 5 4 36 36 H 1.09004 * 109.03271 * 168.16216 * 6 5 4 37 37 H 1.07995 * 119.99722 * 5.19221 * 10 8 7 38 38 H 1.07995 * 120.00705 * 0.02562 * 11 10 8 39 39 H 1.08001 * 120.08768 * 0.02562 * 13 12 11 40 40 H 1.07999 * 119.91674 * 180.22818 * 14 13 12 41 41 H 1.08994 * 109.47424 * 125.01596 * 16 15 14 42 42 H 0.96699 * 114.00216 * 59.99655 * 17 16 15 43 43 H 1.08003 * 119.91541 * 179.97438 * 22 15 14 44 44 H 1.07997 * 120.08508 * 179.97438 * 23 22 15 45 45 H 1.09001 * 110.07837 * 186.06043 * 24 7 6 46 46 H 1.09002 * 110.08130 * 64.45855 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5024 1.7499 0.0000 4 6 2.5046 -0.9176 1.5034 5 6 2.2488 -2.4144 1.2696 6 6 2.9861 -2.8837 0.0197 7 7 2.3717 -2.3581 -1.2000 8 6 1.6948 -3.1742 -2.0322 9 8 1.6691 -4.3725 -1.8216 10 6 0.9903 -2.6189 -3.1896 11 6 0.2280 -3.4186 -3.9619 12 6 -0.4807 -2.8601 -5.1251 13 6 -0.3701 -1.4997 -5.4288 14 6 -1.0334 -0.9850 -6.5226 15 6 -1.8149 -1.8093 -7.3134 16 6 -2.5407 -1.2377 -8.5040 17 8 -3.9509 -1.3308 -8.2919 18 14 -2.0625 0.5495 -8.7234 19 1 -0.5971 0.6463 -8.9438 20 1 -2.7781 1.1131 -9.8962 21 1 -2.4313 1.3139 -7.5049 22 6 -1.9335 -3.1559 -7.0164 23 6 -1.2723 -3.6865 -5.9289 24 6 2.5050 -0.9182 -1.5045 25 1 -0.3634 0.4919 0.9023 26 1 -0.3634 0.5354 -0.8772 27 1 -0.3634 -1.0274 -0.0251 28 1 3.5921 1.7385 -0.0250 29 1 2.1242 2.2749 -0.8772 30 1 2.1651 2.2600 0.9023 31 1 3.5734 -0.7378 1.6193 32 1 1.9740 -0.5845 2.3954 33 1 2.6021 -2.9804 2.1315 34 1 1.1796 -2.5824 1.1404 35 1 4.0214 -2.5466 0.0701 36 1 2.9697 -3.9731 -0.0147 37 1 1.0817 -1.5687 -3.4244 38 1 0.1365 -4.4687 -3.7270 39 1 0.2364 -0.8545 -4.8105 40 1 -0.9461 0.0648 -6.7606 41 1 -2.2699 -1.7987 -9.3984 42 1 -4.2635 -0.8538 -7.5110 43 1 -2.5455 -3.7927 -7.6379 44 1 -1.3661 -4.7373 -5.6981 45 1 1.9085 -0.6642 -2.3807 46 1 3.5516 -0.6675 -1.6775 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:59 Heat of formation + Delta-G solvation = -55.610391 kcal Electronic energy + Delta-G solvation = -24278.041786 eV Core-core repulsion = 20870.542665 eV Total energy + Delta-G solvation = -3407.499122 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09474 -40.50466 -37.81690 -37.28699 -35.17269 -33.75243 -32.21655 -31.23642 -29.36217 -28.35790 -27.95446 -27.36358 -26.18694 -24.23246 -23.76808 -22.41470 -21.19392 -19.60067 -18.95455 -18.20290 -17.36597 -16.97419 -16.64645 -16.48619 -16.17492 -15.76197 -15.26991 -15.10921 -14.90985 -14.69735 -14.45335 -14.34822 -14.17248 -13.96822 -13.81628 -13.79171 -13.68827 -13.20027 -13.15822 -13.10415 -13.03240 -12.85165 -12.24897 -12.16048 -12.11542 -12.06889 -12.02566 -11.62015 -11.54535 -11.36942 -10.90860 -10.74926 -10.39673 -10.33684 -10.00086 -9.44800 -9.13685 -0.57669 0.36965 0.86007 1.18619 1.47013 1.53994 1.61199 1.83204 1.90687 1.93510 2.17421 2.24211 2.59230 2.79649 3.39873 3.55492 3.62921 3.78465 3.87005 3.98204 4.06589 4.09223 4.18255 4.32825 4.36833 4.44787 4.49638 4.60987 4.68351 4.77909 4.80615 4.82539 4.85029 4.88242 4.91735 4.94392 4.96404 4.99111 5.06742 5.14205 5.22326 5.34465 5.45552 5.47223 5.54412 5.57862 5.60746 5.69506 5.88431 6.31264 6.69928 7.11732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.067 2.933 3 C -0.451 4.451 4 C -0.420 4.420 5 C -0.122 4.122 6 C 0.097 3.903 7 N -0.588 5.588 8 C 0.534 3.466 9 O -0.597 6.597 10 C -0.215 4.215 11 C -0.021 4.021 12 C -0.082 4.082 13 C -0.097 4.097 14 C -0.134 4.134 15 C -0.111 4.111 16 C -0.084 4.084 17 O -0.553 6.553 18 Si 0.983 3.017 19 H -0.255 1.255 20 H -0.279 1.279 21 H -0.246 1.246 22 C -0.102 4.102 23 C -0.101 4.101 24 C -0.209 4.209 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.163 0.837 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.139 0.861 41 H 0.123 0.877 42 H 0.389 0.611 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.111 0.889 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 7.005 0.454 7.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.257 2.743 3 C -0.560 4.560 4 C -0.504 4.504 5 C -0.161 4.161 6 C -0.026 4.026 7 N -0.319 5.319 8 C 0.327 3.673 9 O -0.481 6.481 10 C -0.235 4.235 11 C -0.041 4.041 12 C -0.082 4.082 13 C -0.115 4.115 14 C -0.151 4.151 15 C -0.111 4.111 16 C -0.194 4.194 17 O -0.360 6.360 18 Si 0.807 3.193 19 H -0.179 1.179 20 H -0.205 1.205 21 H -0.170 1.170 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.376 4.376 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.180 0.820 38 H 0.140 0.860 39 H 0.170 0.830 40 H 0.157 0.843 41 H 0.141 0.859 42 H 0.238 0.762 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.130 0.870 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.333 6.887 -0.062 7.015 hybrid contribution -0.158 -0.766 0.626 1.002 sum 1.175 6.121 0.564 6.258 Atomic orbital electron populations 1.26305 1.21994 1.03655 1.04992 0.78748 0.65603 0.65432 0.64485 1.26103 1.06891 1.17918 1.05094 1.26459 1.07153 1.01259 1.15576 1.21472 1.00232 0.97448 0.96915 1.21444 0.97693 0.99924 0.83510 1.47770 1.52721 1.09467 1.21924 1.18803 0.79282 0.85601 0.83618 1.90781 1.64691 1.16967 1.75683 1.23110 1.01643 1.02280 0.96432 1.22393 0.91199 0.99634 0.90831 1.19103 0.99078 0.94313 0.95688 1.21600 0.98654 0.94231 0.97010 1.21208 0.98004 1.00249 0.95668 1.20636 0.98218 0.94709 0.97579 1.25107 0.83515 1.12633 0.98173 1.86502 1.19981 1.77775 1.51733 0.85211 0.79842 0.74083 0.80193 1.17889 1.20467 1.16954 1.21116 0.98761 0.94912 0.97161 1.21638 0.95453 1.00469 0.94371 1.27429 1.08479 0.84613 1.17030 0.91036 0.90354 0.92813 0.90500 0.90319 0.90966 0.89490 0.90166 0.90538 0.92694 0.89142 0.91347 0.81986 0.86005 0.82968 0.84343 0.85905 0.76173 0.84601 0.84452 0.87044 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.14 8.65 113.37 0.98 3.12 16 2 Si 1.07 -9.05 11.99 68.60 0.82 -8.22 16 3 C -0.45 3.91 8.65 113.37 0.98 4.89 16 4 C -0.42 2.15 5.03 72.20 0.36 2.51 16 5 C -0.12 0.09 5.69 30.65 0.17 0.26 16 6 C 0.10 0.16 5.80 86.25 0.50 0.66 16 7 N -0.59 -1.00 2.63 -630.49 -1.66 -2.65 16 8 C 0.53 4.08 7.61 86.38 0.66 4.73 16 9 O -0.60 -9.91 15.64 -4.31 -0.07 -9.98 16 10 C -0.21 -0.39 8.75 23.62 0.21 -0.18 16 11 C -0.02 -0.06 9.46 23.84 0.23 0.16 16 12 C -0.08 -0.09 5.87 -20.15 -0.12 -0.20 16 13 C -0.10 0.20 9.41 22.57 0.21 0.41 16 14 C -0.13 0.29 8.65 22.23 0.19 0.49 16 15 C -0.11 0.11 5.36 -19.79 -0.11 0.00 16 16 C -0.08 0.21 2.80 71.24 0.20 0.41 16 17 O -0.55 0.39 12.83 -148.98 -1.91 -1.53 16 18 Si 0.98 -3.14 25.12 68.60 1.72 -1.42 16 19 H -0.25 0.60 7.11 99.48 0.71 1.31 16 20 H -0.28 -0.30 7.11 99.48 0.71 0.41 16 21 H -0.25 1.02 7.04 99.48 0.70 1.72 16 22 C -0.10 -0.03 9.66 22.23 0.21 0.19 16 23 C -0.10 -0.09 9.80 22.57 0.22 0.13 16 24 C -0.21 1.31 5.35 127.52 0.68 1.99 16 25 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 26 H 0.08 -0.49 7.96 -2.38 -0.02 -0.50 16 27 H 0.05 -0.05 7.96 -2.39 -0.02 -0.07 16 28 H 0.08 -0.69 7.96 -2.39 -0.02 -0.71 16 29 H 0.08 -0.74 7.96 -2.39 -0.02 -0.76 16 30 H 0.07 -0.55 7.96 -2.39 -0.02 -0.57 16 31 H 0.09 -0.57 7.99 -2.39 -0.02 -0.59 16 32 H 0.08 -0.41 7.99 -2.39 -0.02 -0.43 16 33 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.05 0.09 7.89 -2.39 -0.02 0.07 16 35 H 0.09 -0.19 8.11 -2.39 -0.02 -0.21 16 36 H 0.07 0.48 6.97 -2.38 -0.02 0.46 16 37 H 0.16 -0.88 3.86 -2.91 -0.01 -0.89 16 38 H 0.12 0.71 7.53 -2.91 -0.02 0.69 16 39 H 0.15 -1.15 6.17 -2.91 -0.02 -1.17 16 40 H 0.14 -0.78 4.84 -2.91 -0.01 -0.80 16 41 H 0.12 -0.45 7.96 -2.39 -0.02 -0.47 16 42 H 0.39 -2.77 8.70 -74.06 -0.64 -3.42 16 43 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 44 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 45 H 0.11 -1.07 5.20 -2.39 -0.01 -1.09 16 46 H 0.10 -0.83 8.00 -2.39 -0.02 -0.85 16 Total: 0.00 -18.48 369.23 5.58 -12.90 By element: Atomic # 1 Polarization: -9.74 SS G_CDS: 1.08 Total: -8.66 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 5.59 Total: 19.56 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: -1.66 Total: -2.65 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.98 Total: -11.50 kcal Atomic # 14 Polarization: -12.19 SS G_CDS: 2.55 Total: -9.64 kcal Total: -18.48 5.58 -12.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.712 kcal (2) G-P(sol) polarization free energy of solvation -18.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds