Wall clock time and date at job start Tue Mar 9 2021 13:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35652 * 116.99931 * 2 1 4 4 C 1.38670 * 120.15244 * 0.24177 * 3 2 1 5 5 C 1.38100 * 120.08623 * 180.27353 * 4 3 2 6 6 C 1.38509 * 120.38684 * 359.76293 * 5 4 3 7 7 C 1.50702 * 119.84670 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.46813 * 245.02149 * 7 6 5 9 9 Si 1.86301 * 109.47298 * 5.01515 * 7 6 5 10 10 H 1.48506 * 109.46991 * 60.00345 * 9 7 6 11 11 H 1.48498 * 109.47380 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47188 * 300.00770 * 9 7 6 13 13 C 1.37824 * 120.30032 * 359.97370 * 6 5 4 14 14 C 1.39670 * 119.91173 * 0.02562 * 13 6 5 15 15 C 1.47533 * 120.19376 * 179.97438 * 14 13 6 16 16 O 1.21584 * 120.00017 * 129.44530 * 15 14 13 17 17 N 1.34784 * 119.99796 * 309.44468 * 15 14 13 18 18 C 1.46336 * 120.53153 * 354.77523 * 17 15 14 19 19 C 1.52511 * 111.69074 * 109.12724 * 18 17 15 20 20 C 1.53651 * 110.12380 * 71.26194 * 19 18 17 21 21 Si 1.87458 * 107.32436 * 299.66296 * 20 19 18 22 22 C 1.86303 * 110.01483 * 165.98059 * 21 20 19 23 23 C 1.86295 * 110.01663 * 287.41500 * 21 20 19 24 24 C 1.47791 * 120.53071 * 174.79347 * 17 15 14 25 25 H 1.08997 * 109.46906 * 59.99816 * 1 2 3 26 26 H 1.08997 * 109.46728 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46633 * 299.99350 * 1 2 3 28 28 H 1.07997 * 119.95496 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.80369 * 179.74307 * 5 4 3 30 30 H 1.09000 * 109.47418 * 125.01985 * 7 6 5 31 31 H 0.96699 * 114.00044 * 59.99492 * 8 7 6 32 32 H 1.08003 * 120.04037 * 179.97438 * 13 6 5 33 33 H 1.08994 * 109.04115 * 348.55808 * 18 17 15 34 34 H 1.08999 * 109.03639 * 229.69395 * 18 17 15 35 35 H 1.09002 * 109.36069 * 311.06423 * 19 18 17 36 36 H 1.08996 * 109.36169 * 191.46147 * 19 18 17 37 37 H 1.09001 * 109.88122 * 59.11500 * 20 19 18 38 38 H 1.09002 * 109.88364 * 180.13296 * 20 19 18 39 39 H 1.09004 * 109.46960 * 59.99978 * 22 21 20 40 40 H 1.08997 * 109.47163 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.46842 * 300.00520 * 22 21 20 42 42 H 1.08996 * 109.47228 * 59.99864 * 23 21 20 43 43 H 1.08996 * 109.47329 * 180.02562 * 23 21 20 44 44 H 1.09006 * 109.47227 * 299.99921 * 23 21 20 45 45 H 1.08995 * 110.07809 * 115.52176 * 24 17 15 46 46 H 1.09001 * 110.08060 * 353.91454 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3736 0.0051 5 6 1.9211 3.6034 -0.0007 6 6 3.3038 3.6837 -0.0065 7 6 3.9768 5.0321 -0.0133 8 8 4.6936 5.2005 -1.2380 9 14 2.6892 6.3696 0.1415 10 1 1.9443 6.1947 1.4142 11 1 3.3523 7.6983 0.1342 12 1 1.7446 6.2820 -1.0010 13 6 4.0670 2.5360 -0.0061 14 6 3.4446 1.2857 -0.0004 15 6 4.2554 0.0532 -0.0005 16 8 4.0340 -0.8203 0.8157 17 7 5.2417 -0.1045 -0.9056 18 6 5.4449 0.8857 -1.9637 19 6 6.7174 1.6962 -1.7404 20 6 7.9537 0.8206 -1.9969 21 14 7.8857 -0.6095 -0.7869 22 6 9.0933 -1.9336 -1.2961 23 6 8.2815 -0.0098 0.9320 24 6 6.1349 -1.2804 -0.8455 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 0.2142 2.3191 0.0094 29 1 1.3308 4.5078 -0.0009 30 1 4.6702 5.0964 0.8253 31 1 4.1382 5.1547 -2.0283 32 1 5.1449 2.6035 -0.0111 33 1 4.5913 1.5630 -1.9856 34 1 5.5142 0.3721 -2.9227 35 1 6.7388 2.0595 -0.7129 36 1 6.7288 2.5462 -2.4225 37 1 7.9346 0.4426 -3.0191 38 1 8.8606 1.4029 -1.8340 39 1 10.1020 -1.5207 -1.3068 40 1 9.0468 -2.7600 -0.5868 41 1 8.8379 -2.2945 -2.2924 42 1 7.5548 0.7462 1.2293 43 1 8.2399 -0.8478 1.6277 44 1 9.2819 0.4230 0.9444 45 1 6.0004 -1.8983 -1.7333 46 1 5.9270 -1.8627 0.0522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:16 Heat of formation + Delta-G solvation = -105.501584 kcal Electronic energy + Delta-G solvation = -26805.324408 eV Core-core repulsion = 23205.205790 eV Total energy + Delta-G solvation = -3600.118618 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92797 -40.29529 -39.22191 -37.44503 -37.07711 -33.31630 -32.86069 -31.87223 -29.40647 -28.70503 -28.40779 -27.86489 -26.82547 -26.15257 -24.35799 -23.01355 -22.21788 -20.34884 -19.28887 -18.37255 -18.23499 -17.34352 -17.25441 -16.73092 -16.27662 -16.09403 -15.97232 -15.88006 -15.20045 -14.89616 -14.79971 -14.62362 -14.40014 -14.09557 -13.96621 -13.87160 -13.72328 -13.46475 -13.46047 -13.22084 -13.17609 -13.08884 -12.90428 -12.46668 -12.21562 -12.19052 -12.07952 -12.01280 -11.94101 -11.59765 -11.49977 -11.02982 -10.80903 -10.35874 -10.32545 -10.10719 -9.41899 -9.23708 -0.18406 0.17285 1.21369 1.48429 1.50832 1.56502 1.68633 1.80103 1.90454 1.96765 2.16595 2.19819 2.50351 2.57816 3.36399 3.56116 3.65624 3.77384 3.87926 3.98371 4.07930 4.15380 4.25547 4.29274 4.35343 4.47769 4.53826 4.63070 4.66299 4.68791 4.72113 4.72903 4.75633 4.83088 4.85040 4.89848 4.94791 4.97640 5.04860 5.12528 5.24507 5.33825 5.44412 5.50079 5.54917 5.61505 5.63663 6.19660 6.33546 6.79595 7.09846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.159 3.841 4 C -0.205 4.205 5 C -0.062 4.062 6 C -0.160 4.160 7 C -0.070 4.070 8 O -0.546 6.546 9 Si 0.976 3.024 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.244 1.244 13 C -0.022 4.022 14 C -0.185 4.185 15 C 0.555 3.445 16 O -0.580 6.580 17 N -0.587 5.587 18 C 0.088 3.912 19 C -0.125 4.125 20 C -0.400 4.400 21 Si 1.061 2.939 22 C -0.452 4.452 23 C -0.463 4.463 24 C -0.206 4.206 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.160 0.840 29 H 0.147 0.853 30 H 0.124 0.876 31 H 0.390 0.610 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 4.637 -4.922 6.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.112 3.888 4 C -0.224 4.224 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.181 4.181 8 O -0.353 6.353 9 Si 0.800 3.200 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.167 1.167 13 C -0.041 4.041 14 C -0.188 4.188 15 C 0.345 3.655 16 O -0.460 6.460 17 N -0.319 5.319 18 C -0.034 4.034 19 C -0.163 4.163 20 C -0.487 4.487 21 Si 1.251 2.749 22 C -0.561 4.561 23 C -0.569 4.569 24 C -0.371 4.371 25 H 0.095 0.905 26 H 0.127 0.873 27 H 0.089 0.911 28 H 0.178 0.822 29 H 0.164 0.836 30 H 0.142 0.858 31 H 0.239 0.761 32 H 0.168 0.832 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.420 4.640 -4.020 6.153 hybrid contribution -0.770 -0.828 0.079 1.133 sum -1.190 3.812 -3.941 5.611 Atomic orbital electron populations 1.23427 0.75928 1.05577 1.02928 1.86156 1.23888 1.27027 1.87383 1.19250 0.90995 0.85410 0.93155 1.21401 1.01580 0.90902 1.08472 1.21274 0.94130 0.97893 0.94645 1.20283 0.93488 0.96334 1.05927 1.24905 1.04435 0.97606 0.91150 1.86501 1.38388 1.94998 1.15379 0.85319 0.76725 0.76713 0.81219 1.18524 1.20087 1.16697 1.21208 1.01072 0.88747 0.93054 1.19308 0.91186 0.94337 1.14016 1.18482 0.79781 0.86170 0.81110 1.90743 1.69479 1.44626 1.41186 1.47913 1.30695 1.23754 1.29511 1.21864 1.00081 0.91277 0.90134 1.21613 0.92905 0.98873 1.02955 1.26170 1.00285 1.11375 1.10907 0.78887 0.62007 0.67385 0.66597 1.26104 1.11502 1.12364 1.06089 1.26313 1.05334 1.05765 1.19518 1.27369 1.12610 0.92212 1.04894 0.90461 0.87251 0.91134 0.82205 0.83554 0.85808 0.76117 0.83151 0.89214 0.89215 0.91790 0.88466 0.88976 0.89130 0.90152 0.91530 0.90320 0.92500 0.92203 0.90079 0.90004 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.33 -3.26 9.60 -82.73 -0.79 -4.05 16 3 C 0.16 1.15 6.68 22.84 0.15 1.30 16 4 C -0.21 -0.12 9.03 22.34 0.20 0.08 16 5 C -0.06 0.11 8.65 22.30 0.19 0.30 16 6 C -0.16 0.21 5.35 -19.90 -0.11 0.10 16 7 C -0.07 0.30 2.79 71.24 0.20 0.50 16 8 O -0.55 2.51 12.83 -148.98 -1.91 0.59 16 9 Si 0.98 -4.14 25.12 68.60 1.72 -2.42 16 10 H -0.26 0.62 7.11 99.48 0.71 1.32 16 11 H -0.28 0.05 7.11 99.48 0.71 0.76 16 12 H -0.24 1.33 7.04 99.48 0.70 2.03 16 13 C -0.02 -0.04 7.33 22.52 0.17 0.12 16 14 C -0.18 -1.47 4.70 -20.01 -0.09 -1.56 16 15 C 0.56 7.06 6.90 86.69 0.60 7.66 16 16 O -0.58 -12.77 16.07 2.96 0.05 -12.72 16 17 N -0.59 -3.24 2.63 -629.35 -1.65 -4.90 16 18 C 0.09 -0.13 4.99 86.25 0.43 0.30 16 19 C -0.13 0.59 5.21 30.65 0.16 0.75 16 20 C -0.40 2.45 5.02 72.20 0.36 2.81 16 21 Si 1.06 -3.92 11.99 68.60 0.82 -3.10 16 22 C -0.45 1.67 8.65 113.37 0.98 2.66 16 23 C -0.46 -0.32 8.65 113.37 0.98 0.66 16 24 C -0.21 -0.76 5.42 127.52 0.69 -0.07 16 25 H 0.08 -0.36 7.67 -2.39 -0.02 -0.38 16 26 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.07 -0.21 7.65 -2.39 -0.02 -0.23 16 28 H 0.16 -0.73 6.30 -2.91 -0.02 -0.75 16 29 H 0.15 -0.88 4.83 -2.91 -0.01 -0.89 16 30 H 0.12 -0.66 7.96 -2.39 -0.02 -0.68 16 31 H 0.39 -4.31 8.70 -74.06 -0.64 -4.95 16 32 H 0.15 -0.05 5.37 -2.91 -0.02 -0.07 16 33 H 0.09 -0.15 5.40 -2.39 -0.01 -0.16 16 34 H 0.09 -0.37 8.11 -2.39 -0.02 -0.39 16 35 H 0.06 -0.23 6.17 -2.39 -0.01 -0.24 16 36 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H 0.09 -0.73 7.99 -2.39 -0.02 -0.75 16 38 H 0.09 -0.65 7.99 -2.39 -0.02 -0.67 16 39 H 0.08 -0.37 7.96 -2.38 -0.02 -0.39 16 40 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 41 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 42 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 43 H 0.06 0.16 7.96 -2.39 -0.02 0.15 16 44 H 0.08 -0.12 7.96 -2.38 -0.02 -0.14 16 45 H 0.08 0.11 8.00 -2.39 -0.02 0.09 16 46 H 0.07 0.68 6.93 -2.39 -0.02 0.66 16 Total: 0.00 -22.26 361.82 5.36 -16.90 By element: Atomic # 1 Polarization: -8.13 SS G_CDS: 1.09 Total: -7.04 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 6.03 Total: 16.72 kcal Atomic # 7 Polarization: -3.24 SS G_CDS: -1.65 Total: -4.90 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -2.66 Total: -16.18 kcal Atomic # 14 Polarization: -8.06 SS G_CDS: 2.55 Total: -5.51 kcal Total: -22.26 5.36 -16.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.597 kcal (2) G-P(sol) polarization free energy of solvation -22.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds