Wall clock time and date at job start Tue Mar 9 2021 13:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86302 * 109.99803 * 2 1 4 4 C 1.87462 * 110.01799 * 121.35003 * 2 1 3 5 5 C 1.53647 * 107.32485 * 165.98122 * 4 2 1 6 6 C 1.52505 * 110.12376 * 299.66051 * 5 4 2 7 7 N 1.46335 * 111.69171 * 71.26695 * 6 5 4 8 8 C 1.34781 * 120.53450 * 109.10858 * 7 6 5 9 9 O 1.21279 * 120.00156 * 179.97438 * 8 7 6 10 10 C 1.50699 * 119.99628 * 0.02562 * 8 7 6 11 11 N 1.46502 * 109.46732 * 180.02562 * 10 8 7 12 12 C 1.35040 * 125.92731 * 124.98502 * 11 10 8 13 13 C 1.35084 * 107.97818 * 180.02562 * 12 11 10 14 14 C 1.50698 * 126.07717 * 179.97438 * 13 12 11 15 15 O 1.42896 * 109.47256 * 105.16443 * 14 13 12 16 16 Si 1.86306 * 109.47126 * 345.16270 * 14 13 12 17 17 H 1.48504 * 109.46710 * 60.00012 * 16 14 13 18 18 H 1.48499 * 109.47237 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46962 * 300.00217 * 16 14 13 20 20 C 1.40848 * 107.85009 * 0.02562 * 13 12 11 21 21 C 1.48419 * 126.03915 * 180.02562 * 20 13 12 22 22 C 1.39315 * 120.12121 * 317.19786 * 21 20 13 23 23 C 1.38023 * 119.87904 * 179.72331 * 22 21 20 24 24 C 1.38328 * 120.11731 * 0.57220 * 23 22 21 25 25 C 1.38313 * 120.24032 * 359.69786 * 24 23 22 26 26 C 1.38027 * 120.12271 * 0.02562 * 25 24 23 27 27 N 1.31627 * 107.92222 * 0.02562 * 20 13 12 28 28 C 1.47791 * 118.93671 * 289.38334 * 7 6 5 29 29 H 1.09003 * 109.46692 * 298.65659 * 1 2 3 30 30 H 1.08998 * 109.47251 * 58.65095 * 1 2 3 31 31 H 1.08995 * 109.46885 * 178.65529 * 1 2 3 32 32 H 1.08998 * 109.47124 * 181.34548 * 3 2 1 33 33 H 1.08997 * 109.47086 * 301.34865 * 3 2 1 34 34 H 1.09008 * 109.47047 * 61.34947 * 3 2 1 35 35 H 1.08996 * 109.88419 * 46.52370 * 4 2 1 36 36 H 1.09004 * 109.94566 * 285.47145 * 4 2 1 37 37 H 1.09000 * 109.35999 * 179.45757 * 5 4 2 38 38 H 1.09001 * 109.36138 * 59.86173 * 5 4 2 39 39 H 1.09003 * 109.03828 * 310.69854 * 6 5 4 40 40 H 1.08994 * 108.97942 * 191.79687 * 6 5 4 41 41 H 1.08999 * 109.47077 * 60.00200 * 10 8 7 42 42 H 1.08999 * 109.47147 * 299.99708 * 10 8 7 43 43 H 1.08000 * 126.01484 * 359.97438 * 12 11 10 44 44 H 1.09005 * 109.47087 * 225.16472 * 14 13 12 45 45 H 0.96701 * 114.00250 * 299.99980 * 15 14 13 46 46 H 1.07999 * 120.06029 * 359.97438 * 22 21 20 47 47 H 1.07999 * 119.94155 * 180.31678 * 23 22 21 48 48 H 1.08001 * 119.87727 * 179.72369 * 24 23 22 49 49 H 1.07998 * 119.93871 * 180.02562 * 25 24 23 50 50 H 1.08000 * 120.06319 * 180.02562 * 26 25 24 51 51 H 1.08996 * 110.08139 * 173.66094 * 28 7 6 52 52 H 1.09007 * 110.07791 * 295.26909 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5001 1.7507 0.0000 4 6 2.5047 -0.9164 1.5042 5 6 3.9984 -1.1900 1.2705 6 6 4.1861 -2.0447 0.0214 7 7 3.9033 -1.2883 -1.1990 8 6 4.9021 -0.9338 -2.0317 9 8 4.6567 -0.3074 -3.0408 10 6 6.3235 -1.3167 -1.7094 11 7 7.2138 -0.8181 -2.7606 12 6 8.2920 -0.0262 -2.5761 13 6 8.8455 0.2129 -3.7849 14 6 10.0692 1.0513 -4.0504 15 8 11.1770 0.1977 -4.3438 16 14 10.4576 2.0776 -2.5447 17 1 10.7125 1.1821 -1.3878 18 1 11.6638 2.9033 -2.8062 19 1 9.3063 2.9646 -2.2399 20 6 8.0749 -0.4597 -4.7532 21 6 8.3256 -0.4695 -6.2160 22 6 8.6784 0.7075 -6.8727 23 6 8.9160 0.6916 -8.2323 24 6 8.7927 -0.4877 -8.9447 25 6 8.4372 -1.6579 -8.2987 26 6 8.2029 -1.6545 -6.9384 27 7 7.0933 -1.0782 -4.1316 28 6 2.5058 -0.9142 -1.5007 29 1 -0.3633 0.4929 0.9018 30 1 -0.3633 0.5346 -0.8776 31 1 -0.3633 -1.0273 -0.0241 32 1 3.5898 1.7408 -0.0241 33 1 2.1220 2.2749 -0.8776 34 1 2.1613 2.2606 0.9019 35 1 1.9690 -1.8584 1.6209 36 1 2.3752 -0.3035 2.3963 37 1 4.4088 -1.7153 2.1329 38 1 4.5236 -0.2434 1.1429 39 1 3.5140 -2.9014 0.0725 40 1 5.2152 -2.4020 -0.0122 41 1 6.4028 -2.4022 -1.6502 42 1 6.6099 -0.8788 -0.7532 43 1 8.6486 0.3505 -1.6288 44 1 9.8821 1.7086 -4.8997 45 1 11.4007 -0.4156 -3.6304 46 1 8.7699 1.6298 -6.3183 47 1 9.1945 1.6023 -8.7415 48 1 8.9751 -0.4948 -10.0092 49 1 8.3428 -2.5760 -8.8596 50 1 7.9258 -2.5689 -6.4349 51 1 2.4728 -0.2642 -2.3750 52 1 1.9082 -1.8089 -1.6753 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:25 Heat of formation + Delta-G solvation = 12.047061 kcal Electronic energy + Delta-G solvation = -32096.494437 eV Core-core repulsion = 27993.549822 eV Total energy + Delta-G solvation = -4102.944615 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 373.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.54133 -40.90498 -39.77827 -37.71704 -37.46532 -34.83313 -33.33460 -32.38968 -32.01447 -31.46680 -29.73038 -29.14072 -28.45293 -27.50204 -26.50104 -25.73122 -23.98221 -23.43668 -22.65183 -21.68479 -21.18155 -20.11592 -18.78979 -18.37469 -17.69828 -17.50194 -16.76355 -16.75264 -16.39966 -16.12627 -15.74493 -15.70701 -15.59404 -15.17701 -15.00572 -14.69858 -14.53809 -14.32639 -14.26822 -14.15525 -14.05984 -13.97121 -13.89601 -13.66144 -13.50563 -13.30646 -13.25689 -13.14820 -12.99233 -12.49014 -12.39899 -12.19961 -12.10285 -12.09098 -12.02453 -11.78716 -11.58816 -11.55407 -11.19061 -10.87427 -10.61228 -10.35385 -10.21550 -9.87581 -9.80381 -9.35761 -9.32219 0.10844 0.46439 0.75160 1.19152 1.29013 1.38514 1.47001 1.55860 1.66605 1.70218 1.77102 1.87400 1.97435 2.14316 2.54301 2.88264 3.21326 3.40479 3.61403 3.67717 3.81481 3.93000 3.98759 4.03596 4.06567 4.14126 4.16958 4.23748 4.43494 4.44148 4.51529 4.52985 4.55006 4.66640 4.68003 4.71183 4.75213 4.77435 4.79439 4.86957 4.89980 4.94424 4.97062 5.07097 5.10867 5.27828 5.31865 5.38865 5.45378 5.55404 5.57071 5.57452 5.59450 5.60638 5.85884 6.03458 6.26332 6.56239 6.83836 7.04986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.068 2.932 3 C -0.464 4.464 4 C -0.400 4.400 5 C -0.129 4.129 6 C 0.084 3.916 7 N -0.590 5.590 8 C 0.486 3.514 9 O -0.570 6.570 10 C 0.108 3.892 11 N -0.360 5.360 12 C 0.064 3.936 13 C -0.264 4.264 14 C -0.050 4.050 15 O -0.553 6.553 16 Si 0.985 3.015 17 H -0.226 1.226 18 H -0.271 1.271 19 H -0.263 1.263 20 C 0.111 3.889 21 C -0.026 4.026 22 C -0.106 4.106 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.112 4.112 27 N -0.293 5.293 28 C -0.205 4.205 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.141 0.859 42 H 0.174 0.826 43 H 0.215 0.785 44 H 0.105 0.895 45 H 0.385 0.615 46 H 0.131 0.869 47 H 0.148 0.852 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.115 0.885 51 H 0.066 0.934 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 -2.140 9.818 10.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.258 2.742 3 C -0.570 4.570 4 C -0.488 4.488 5 C -0.167 4.167 6 C -0.038 4.038 7 N -0.324 5.324 8 C 0.273 3.727 9 O -0.448 6.448 10 C -0.015 4.015 11 N -0.141 5.141 12 C -0.081 4.081 13 C -0.275 4.275 14 C -0.160 4.160 15 O -0.360 6.360 16 Si 0.806 3.194 17 H -0.148 1.148 18 H -0.196 1.196 19 H -0.187 1.187 20 C -0.054 4.054 21 C -0.028 4.028 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.131 4.131 27 N -0.114 5.114 28 C -0.370 4.370 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.159 0.841 42 H 0.191 0.809 43 H 0.231 0.769 44 H 0.123 0.877 45 H 0.234 0.766 46 H 0.149 0.851 47 H 0.166 0.834 48 H 0.165 0.835 49 H 0.160 0.840 50 H 0.133 0.867 51 H 0.085 0.915 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.883 -1.826 9.452 9.667 hybrid contribution 0.096 -0.011 -0.453 0.463 sum -0.787 -1.836 8.999 9.218 Atomic orbital electron populations 1.26204 1.20874 1.05041 1.04632 0.78723 0.65623 0.64960 0.64891 1.26347 1.05842 1.20684 1.04103 1.26129 1.00605 1.08811 1.13241 1.21601 0.96723 1.00876 0.97490 1.21978 1.04562 0.94827 0.82417 1.47990 1.05962 1.55481 1.22927 1.21124 0.88337 0.80004 0.83206 1.90784 1.84430 1.41693 1.27915 1.22074 0.85550 1.04045 0.89842 1.48153 1.21868 1.39124 1.04987 1.22833 0.89382 0.95153 1.00775 1.20691 1.04399 1.10705 0.91736 1.24576 0.83200 0.96282 1.11945 1.86497 1.48438 1.54131 1.46898 0.85276 0.79707 0.78647 0.75726 1.14801 1.19554 1.18695 1.20852 0.93288 0.97364 0.93885 1.17964 1.01520 0.94782 0.88527 1.21314 0.98801 0.97134 0.95268 1.21408 0.99622 0.99513 0.93545 1.21580 0.98442 0.92397 1.01267 1.21359 0.99582 0.99653 0.93854 1.21260 0.99703 0.97180 0.94967 1.77716 1.21227 1.24467 0.88032 1.27207 0.85295 1.07795 1.16744 0.90336 0.91941 0.90405 0.92243 0.92802 0.90325 0.89053 0.89379 0.88160 0.91344 0.88936 0.87259 0.84144 0.80873 0.76910 0.87726 0.76630 0.85100 0.83400 0.83485 0.84020 0.86689 0.91479 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.11 8.65 113.37 0.98 3.09 16 2 Si 1.07 -6.76 11.97 68.60 0.82 -5.93 16 3 C -0.46 0.60 8.65 113.37 0.98 1.58 16 4 C -0.40 4.03 5.02 72.20 0.36 4.40 16 5 C -0.13 1.49 5.68 30.65 0.17 1.66 16 6 C 0.08 -0.85 5.68 86.25 0.49 -0.36 16 7 N -0.59 0.75 2.64 -625.85 -1.65 -0.90 16 8 C 0.49 2.50 7.73 87.66 0.68 3.18 16 9 O -0.57 -10.05 15.13 -3.03 -0.05 -10.09 16 10 C 0.11 -0.31 5.34 85.63 0.46 0.14 16 11 N -0.36 -2.04 3.40 -351.91 -1.20 -3.24 16 12 C 0.06 0.11 9.96 83.47 0.83 0.94 16 13 C -0.26 -1.64 5.35 -19.95 -0.11 -1.74 16 14 C -0.05 -0.14 2.51 71.24 0.18 0.04 16 15 O -0.55 -2.14 12.88 -148.98 -1.92 -4.06 16 16 Si 0.99 -1.66 26.06 68.60 1.79 0.13 16 17 H -0.23 1.35 7.03 99.48 0.70 2.05 16 18 H -0.27 -0.51 7.11 99.48 0.71 0.20 16 19 H -0.26 -0.08 7.11 99.48 0.71 0.63 16 20 C 0.11 1.42 6.67 42.53 0.28 1.70 16 21 C -0.03 -0.33 5.74 -20.04 -0.12 -0.44 16 22 C -0.11 -0.98 8.89 22.48 0.20 -0.79 16 23 C -0.12 -0.73 10.03 22.24 0.22 -0.50 16 24 C -0.12 -0.62 10.04 22.31 0.22 -0.39 16 25 C -0.13 -0.91 10.03 22.24 0.22 -0.69 16 26 C -0.11 -1.27 9.78 22.48 0.22 -1.05 16 27 N -0.29 -4.24 11.66 -48.15 -0.56 -4.81 16 28 C -0.21 -0.05 5.41 127.52 0.69 0.64 16 29 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 30 H 0.06 -0.15 7.96 -2.39 -0.02 -0.17 16 31 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 32 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 33 H 0.05 0.11 7.96 -2.39 -0.02 0.09 16 34 H 0.08 -0.24 7.96 -2.38 -0.02 -0.26 16 35 H 0.09 -1.04 7.99 -2.39 -0.02 -1.06 16 36 H 0.09 -0.92 7.99 -2.38 -0.02 -0.94 16 37 H 0.10 -1.45 8.14 -2.39 -0.02 -1.47 16 38 H 0.07 -0.75 7.90 -2.39 -0.02 -0.77 16 39 H 0.09 -1.07 8.11 -2.39 -0.02 -1.09 16 40 H 0.11 -1.68 5.92 -2.39 -0.01 -1.70 16 41 H 0.14 -1.10 7.59 -2.39 -0.02 -1.12 16 42 H 0.17 -2.30 7.94 -2.39 -0.02 -2.32 16 43 H 0.21 -1.65 6.35 -2.91 -0.02 -1.67 16 44 H 0.10 0.37 5.55 -2.38 -0.01 0.36 16 45 H 0.39 -1.35 8.70 -74.06 -0.64 -1.99 16 46 H 0.13 0.86 6.20 -2.91 -0.02 0.84 16 47 H 0.15 0.08 8.06 -2.91 -0.02 0.06 16 48 H 0.15 -0.03 8.06 -2.91 -0.02 -0.06 16 49 H 0.14 0.36 8.06 -2.91 -0.02 0.33 16 50 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 51 H 0.07 0.50 6.90 -2.39 -0.02 0.48 16 52 H 0.08 -0.12 7.99 -2.38 -0.02 -0.14 16 Total: 0.00 -32.06 419.46 5.24 -26.82 By element: Atomic # 1 Polarization: -10.36 SS G_CDS: 1.03 Total: -9.33 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 6.98 Total: 11.40 kcal Atomic # 7 Polarization: -5.54 SS G_CDS: -3.41 Total: -8.94 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.96 Total: -14.15 kcal Atomic # 14 Polarization: -8.41 SS G_CDS: 2.61 Total: -5.80 kcal Total: -32.06 5.24 -26.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.869 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds