Wall clock time and date at job start Tue Mar 9 2021 13:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86298 * 110.07681 * 2 1 4 4 C 1.87456 * 110.01204 * 238.60028 * 2 1 3 5 5 C 1.53648 * 107.32281 * 194.01687 * 4 2 1 6 6 C 1.52014 * 110.16402 * 60.24509 * 5 4 2 7 7 N 1.46341 * 111.97323 * 288.87255 * 6 5 4 8 8 C 1.34779 * 120.53246 * 250.94323 * 7 6 5 9 9 O 1.21279 * 119.99719 * 179.71711 * 8 7 6 10 10 C 1.50700 * 119.99796 * 359.72174 * 8 7 6 11 11 O 1.42900 * 109.46758 * 180.02562 * 10 8 7 12 12 C 1.35904 * 117.00133 * 179.97438 * 11 10 8 13 13 C 1.38711 * 120.05009 * 0.02562 * 12 11 10 14 14 C 1.38167 * 119.94263 * 179.71812 * 13 12 11 15 15 C 1.38244 * 120.05338 * 0.27973 * 14 13 12 16 16 C 1.38290 * 120.11215 * 359.97438 * 15 14 13 17 17 C 1.38114 * 120.05753 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.02918 * 180.02562 * 17 16 15 19 19 O 1.42899 * 109.47282 * 105.00445 * 18 17 16 20 20 Si 1.86295 * 109.47161 * 345.00253 * 18 17 16 21 21 H 1.48494 * 109.47157 * 59.99888 * 20 18 17 22 22 H 1.48498 * 109.47232 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47262 * 300.00023 * 20 18 17 24 24 C 1.47793 * 118.93511 * 70.66318 * 7 6 5 25 25 H 1.09009 * 109.47085 * 298.60998 * 1 2 3 26 26 H 1.09005 * 109.47050 * 58.59945 * 1 2 3 27 27 H 1.08994 * 109.47728 * 178.60387 * 1 2 3 28 28 H 1.08996 * 109.46834 * 181.39214 * 3 2 1 29 29 H 1.08997 * 109.47294 * 301.39783 * 3 2 1 30 30 H 1.08996 * 109.47239 * 61.39461 * 3 2 1 31 31 H 1.08996 * 109.89269 * 313.47585 * 4 2 1 32 32 H 1.08999 * 109.88532 * 74.49455 * 4 2 1 33 33 H 1.09001 * 109.36495 * 180.54082 * 5 4 2 34 34 H 1.09004 * 109.36634 * 300.27652 * 5 4 2 35 35 H 1.09001 * 108.87345 * 168.23734 * 6 5 4 36 36 H 1.08993 * 108.91537 * 49.53800 * 6 5 4 37 37 H 1.08990 * 109.47399 * 59.99898 * 10 8 7 38 38 H 1.09002 * 109.46565 * 299.99506 * 10 8 7 39 39 H 1.08002 * 120.03310 * 0.02562 * 13 12 11 40 40 H 1.07999 * 119.97386 * 180.24987 * 14 13 12 41 41 H 1.08007 * 119.94618 * 179.97438 * 15 14 13 42 42 H 1.08008 * 119.96671 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.47053 * 225.00166 * 18 17 16 44 44 H 0.96697 * 113.99931 * 179.97438 * 19 18 17 45 45 H 1.09002 * 110.07816 * 64.71735 * 24 7 6 46 46 H 1.09006 * 110.08186 * 186.31565 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5025 1.7498 0.0000 4 6 2.5045 -0.9177 -1.5034 5 6 3.9983 -1.1912 -1.2696 6 6 4.1866 -2.0400 -0.0226 7 7 3.9033 -1.2874 1.2000 8 6 4.9021 -0.9317 2.0321 9 8 4.6568 -0.3037 3.0402 10 6 6.3236 -1.3144 1.7098 11 8 7.1920 -0.8278 2.7350 12 6 8.5182 -1.0901 2.5962 13 6 8.9743 -1.8006 1.4956 14 6 10.3238 -2.0609 1.3537 15 6 11.2185 -1.6189 2.3103 16 6 10.7657 -0.9149 3.4111 17 6 9.4178 -0.6512 3.5571 18 6 8.9252 0.1165 4.7566 19 8 8.5897 1.4491 4.3645 20 14 10.2624 0.1686 6.0527 21 1 11.4652 0.8383 5.4962 22 1 9.7767 0.9246 7.2350 23 1 10.6110 -1.2162 6.4603 24 6 2.5050 -0.9182 1.5046 25 1 -0.3634 0.4921 0.9023 26 1 -0.3633 0.5355 -0.8772 27 1 -0.3634 -1.0273 -0.0250 28 1 3.5922 1.7383 -0.0250 29 1 2.1244 2.2748 -0.8771 30 1 2.1652 2.2599 0.9022 31 1 1.9688 -1.8598 -1.6194 32 1 2.3739 -0.3050 -2.3954 33 1 4.4087 -1.7173 -2.1315 34 1 4.5232 -0.2446 -1.1404 35 1 5.2165 -2.3957 0.0095 36 1 3.5169 -2.8983 -0.0750 37 1 6.6096 -0.8773 0.7532 38 1 6.4033 -2.4000 1.6516 39 1 8.2758 -2.1457 0.7477 40 1 10.6799 -2.6106 0.4949 41 1 12.2730 -1.8238 2.1979 42 1 11.4668 -0.5704 4.1569 43 1 8.0422 -0.3752 5.1651 44 1 8.2640 2.0017 5.0880 45 1 1.9103 -1.8152 1.6776 46 1 2.4712 -0.2707 2.3808 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_2989392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:39 Heat of formation + Delta-G solvation = -104.085835 kcal Electronic energy + Delta-G solvation = -25854.758504 eV Core-core repulsion = 22254.701277 eV Total energy + Delta-G solvation = -3600.057226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66754 -40.69637 -38.54274 -37.54448 -37.44174 -33.37197 -32.90340 -31.44827 -30.23983 -29.26107 -28.43050 -27.43326 -26.65370 -26.17341 -23.47304 -22.65713 -22.42567 -20.15318 -19.44404 -18.52424 -18.06716 -17.53845 -17.48115 -16.91609 -16.59695 -16.15538 -15.74997 -15.46064 -15.25532 -15.05427 -14.84510 -14.53910 -14.28430 -14.19452 -13.97732 -13.91338 -13.77138 -13.59260 -13.47339 -13.24624 -13.12867 -13.05249 -12.94598 -12.66869 -12.23751 -12.14066 -12.08513 -12.00826 -11.78175 -11.75489 -11.52675 -10.95091 -10.78581 -10.34733 -10.28488 -9.98218 -9.36410 -9.23142 0.20646 0.39305 1.11899 1.30945 1.42147 1.42373 1.46965 1.71520 1.83825 1.87569 1.99195 2.47341 2.55601 2.65639 3.31977 3.50547 3.75533 3.86060 3.92275 3.97100 4.01016 4.14517 4.14651 4.23521 4.31536 4.47117 4.50374 4.52083 4.63370 4.67176 4.68195 4.71566 4.81335 4.83805 4.88675 4.95542 4.96616 5.06021 5.26606 5.30273 5.35528 5.38465 5.46778 5.49432 5.58888 5.61763 5.73487 6.17745 6.35152 6.75935 7.02796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.065 2.935 3 C -0.468 4.468 4 C -0.401 4.401 5 C -0.131 4.131 6 C 0.083 3.917 7 N -0.588 5.588 8 C 0.503 3.497 9 O -0.574 6.574 10 C 0.037 3.963 11 O -0.311 6.311 12 C 0.129 3.871 13 C -0.211 4.211 14 C -0.073 4.073 15 C -0.156 4.156 16 C -0.099 4.099 17 C -0.135 4.135 18 C -0.085 4.085 19 O -0.562 6.562 20 Si 0.991 3.009 21 H -0.254 1.254 22 H -0.259 1.259 23 H -0.253 1.253 24 C -0.204 4.204 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.137 0.863 43 H 0.063 0.937 44 H 0.391 0.609 45 H 0.089 0.911 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -5.075 -6.868 8.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.255 2.745 3 C -0.573 4.573 4 C -0.488 4.488 5 C -0.169 4.169 6 C -0.038 4.038 7 N -0.322 5.322 8 C 0.291 3.709 9 O -0.453 6.453 10 C -0.041 4.041 11 O -0.224 6.224 12 C 0.084 3.916 13 C -0.230 4.230 14 C -0.091 4.091 15 C -0.174 4.174 16 C -0.116 4.116 17 C -0.136 4.136 18 C -0.193 4.193 19 O -0.370 6.370 20 Si 0.813 3.187 21 H -0.178 1.178 22 H -0.184 1.184 23 H -0.177 1.177 24 C -0.369 4.369 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.176 0.824 40 H 0.177 0.823 41 H 0.169 0.831 42 H 0.154 0.846 43 H 0.081 0.919 44 H 0.240 0.760 45 H 0.107 0.893 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.176 -4.846 -6.085 7.781 hybrid contribution -0.694 0.500 0.577 1.032 sum -0.518 -4.346 -5.507 7.035 Atomic orbital electron populations 1.26139 1.20171 1.05281 1.04701 0.78806 0.65993 0.64726 0.64936 1.26398 1.05675 1.21127 1.04135 1.26149 1.00190 1.09034 1.13466 1.21519 0.97061 1.00684 0.97623 1.21867 1.04475 0.95038 0.82413 1.47912 1.05977 1.55652 1.22629 1.20571 0.87510 0.79699 0.83136 1.90714 1.84653 1.41546 1.28414 1.22781 0.86826 1.02190 0.92300 1.86168 1.14906 1.74374 1.46942 1.19050 0.82411 0.95324 0.94848 1.21614 0.98540 1.04122 0.98680 1.21410 0.91893 0.96805 0.98995 1.21396 1.01607 1.00008 0.94343 1.21160 0.93147 0.98040 0.99282 1.18939 0.93056 1.03990 0.97573 1.24855 1.07540 0.84856 1.02098 1.86461 1.88050 1.22027 1.40483 0.85159 0.77017 0.81026 0.75474 1.17773 1.18351 1.17666 1.27286 0.84618 1.08235 1.16760 0.91658 0.90431 0.90098 0.92695 0.90424 0.92529 0.88659 0.89513 0.88194 0.92133 0.87855 0.88228 0.86482 0.86037 0.82425 0.82322 0.83092 0.84597 0.91900 0.76035 0.89289 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.26 8.65 113.37 0.98 3.24 16 2 Si 1.07 -5.96 11.99 68.60 0.82 -5.14 16 3 C -0.47 -0.21 8.65 113.37 0.98 0.77 16 4 C -0.40 3.51 5.03 72.20 0.36 3.87 16 5 C -0.13 1.16 5.67 30.49 0.17 1.33 16 6 C 0.08 -0.67 5.65 86.08 0.49 -0.19 16 7 N -0.59 -0.25 2.64 -626.71 -1.65 -1.90 16 8 C 0.50 3.92 7.77 87.66 0.68 4.61 16 9 O -0.57 -10.89 15.93 16.01 0.26 -10.63 16 10 C 0.04 0.07 3.57 71.24 0.25 0.33 16 11 O -0.31 -3.37 9.01 -73.43 -0.66 -4.04 16 12 C 0.13 1.04 6.66 22.51 0.15 1.19 16 13 C -0.21 -0.20 9.04 22.37 0.20 0.00 16 14 C -0.07 0.08 10.04 22.25 0.22 0.30 16 15 C -0.16 -0.15 10.04 22.28 0.22 0.08 16 16 C -0.10 -0.50 8.66 22.25 0.19 -0.31 16 17 C -0.13 -1.21 5.30 -19.77 -0.10 -1.31 16 18 C -0.08 -0.70 2.37 71.24 0.17 -0.53 16 19 O -0.56 -5.68 12.86 -148.98 -1.92 -7.60 16 20 Si 0.99 3.40 25.49 68.60 1.75 5.15 16 21 H -0.25 -1.00 6.73 99.48 0.67 -0.33 16 22 H -0.26 -0.91 7.11 99.48 0.71 -0.20 16 23 H -0.25 -0.93 7.11 99.48 0.71 -0.22 16 24 C -0.20 -0.06 5.44 127.52 0.69 0.63 16 25 H 0.06 -0.21 7.96 -2.38 -0.02 -0.23 16 26 H 0.08 -0.41 7.96 -2.38 -0.02 -0.43 16 27 H 0.08 -0.52 7.96 -2.39 -0.02 -0.53 16 28 H 0.05 0.16 7.96 -2.39 -0.02 0.15 16 29 H 0.08 -0.10 7.96 -2.39 -0.02 -0.12 16 30 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 31 H 0.09 -1.04 7.99 -2.39 -0.02 -1.06 16 32 H 0.09 -0.78 7.99 -2.39 -0.02 -0.79 16 33 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 34 H 0.06 -0.40 7.89 -2.39 -0.02 -0.42 16 35 H 0.10 -1.27 5.93 -2.39 -0.01 -1.28 16 36 H 0.10 -1.09 8.10 -2.39 -0.02 -1.11 16 37 H 0.12 -0.44 7.53 -2.39 -0.02 -0.46 16 38 H 0.12 -0.60 7.12 -2.39 -0.02 -0.62 16 39 H 0.16 -0.96 6.30 -2.91 -0.02 -0.98 16 40 H 0.16 -1.18 8.06 -2.91 -0.02 -1.20 16 41 H 0.15 -0.63 8.06 -2.91 -0.02 -0.66 16 42 H 0.14 0.33 4.89 -2.91 -0.01 0.32 16 43 H 0.06 0.59 7.83 -2.39 -0.02 0.57 16 44 H 0.39 0.68 8.74 -74.06 -0.65 0.03 16 45 H 0.09 -0.24 8.00 -2.39 -0.02 -0.26 16 46 H 0.07 0.48 6.91 -2.38 -0.02 0.46 16 Total: 0.00 -25.90 368.65 5.31 -20.59 By element: Atomic # 1 Polarization: -11.49 SS G_CDS: 1.04 Total: -10.44 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.67 Total: 14.01 kcal Atomic # 7 Polarization: -0.25 SS G_CDS: -1.65 Total: -1.90 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -2.32 Total: -22.26 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 2.57 Total: 0.01 kcal Total: -25.90 5.31 -20.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_2989392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.499 kcal (2) G-P(sol) polarization free energy of solvation -25.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds