Wall clock time and date at job start Tue Mar 9 2021 13:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86291 * 1 3 3 C 1.86303 * 110.07422 * 2 1 4 4 C 1.87457 * 110.01642 * 238.60715 * 2 1 3 5 5 C 1.53645 * 107.32557 * 194.01543 * 4 2 1 6 6 C 1.52009 * 110.16585 * 60.23980 * 5 4 2 7 7 N 1.46343 * 111.96998 * 288.87466 * 6 5 4 8 8 C 1.34773 * 120.52996 * 250.93737 * 7 6 5 9 9 O 1.21284 * 120.00280 * 179.72030 * 8 7 6 10 10 C 1.50706 * 120.00048 * 359.72891 * 8 7 6 11 11 C 1.53005 * 109.47031 * 179.97438 * 10 8 7 12 12 O 1.42900 * 109.46780 * 179.97438 * 11 10 8 13 13 C 1.35901 * 116.99708 * 180.02562 * 12 11 10 14 14 C 1.38711 * 120.05828 * 359.95913 * 13 12 11 15 15 C 1.38158 * 119.94786 * 180.02562 * 14 13 12 16 16 C 1.38250 * 120.05410 * 0.03976 * 15 14 13 17 17 C 1.38281 * 120.11168 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.97423 * 179.97438 * 17 16 15 19 19 O 1.42894 * 109.47272 * 245.02164 * 18 17 16 20 20 Si 1.86304 * 109.46976 * 5.02121 * 18 17 16 21 21 H 1.48500 * 109.47086 * 59.99999 * 20 18 17 22 22 H 1.48502 * 109.47126 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46866 * 300.00159 * 20 18 17 24 24 C 1.38125 * 120.05855 * 359.97438 * 17 16 15 25 25 C 1.47786 * 118.93556 * 70.67089 * 7 6 5 26 26 H 1.09002 * 109.47614 * 298.60007 * 1 2 3 27 27 H 1.09003 * 109.47744 * 58.60084 * 1 2 3 28 28 H 1.09003 * 109.47254 * 178.60308 * 1 2 3 29 29 H 1.08998 * 109.47116 * 181.39625 * 3 2 1 30 30 H 1.08994 * 109.47328 * 301.39541 * 3 2 1 31 31 H 1.08997 * 109.47046 * 61.39750 * 3 2 1 32 32 H 1.09002 * 109.88929 * 313.47384 * 4 2 1 33 33 H 1.09005 * 109.89095 * 74.48354 * 4 2 1 34 34 H 1.09006 * 109.36056 * 180.53959 * 5 4 2 35 35 H 1.08998 * 109.35796 * 300.26815 * 5 4 2 36 36 H 1.09003 * 108.87210 * 168.23400 * 6 5 4 37 37 H 1.09001 * 108.91033 * 49.54036 * 6 5 4 38 38 H 1.08997 * 109.47618 * 59.99453 * 10 8 7 39 39 H 1.08998 * 109.46769 * 299.99595 * 10 8 7 40 40 H 1.09005 * 109.46790 * 59.99840 * 11 10 8 41 41 H 1.08996 * 109.46932 * 299.99772 * 11 10 8 42 42 H 1.08005 * 120.02810 * 0.04287 * 14 13 12 43 43 H 1.08004 * 119.97750 * 180.02562 * 15 14 13 44 44 H 1.07999 * 119.94133 * 179.97438 * 16 15 14 45 45 H 1.09006 * 109.47259 * 125.01509 * 18 17 16 46 46 H 0.96699 * 114.00548 * 60.00333 * 19 18 17 47 47 H 1.07994 * 120.03307 * 179.73079 * 24 17 16 48 48 H 1.09000 * 110.08199 * 64.70811 * 25 7 6 49 49 H 1.08998 * 110.07799 * 186.31644 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5024 1.7499 0.0000 4 6 2.5046 -0.9175 -1.5035 5 6 3.9983 -1.1909 -1.2697 6 6 4.1867 -2.0398 -0.0228 7 7 3.9033 -1.2872 1.1999 8 6 4.9021 -0.9316 2.0319 9 8 4.6569 -0.3035 3.0401 10 6 6.3237 -1.3142 1.7096 11 6 7.2536 -0.7921 2.8067 12 8 8.6015 -1.1554 2.5013 13 6 9.5602 -0.7657 3.3822 14 6 9.2110 -0.0478 4.5165 15 6 10.1875 0.3477 5.4102 16 6 11.5120 0.0292 5.1743 17 6 11.8628 -0.6861 4.0441 18 6 13.3075 -1.0312 3.7897 19 8 13.7569 -0.3606 2.6106 20 14 14.3402 -0.4909 5.2432 21 1 13.8732 -1.1878 6.4685 22 1 15.7638 -0.8314 4.9928 23 1 14.2066 0.9766 5.4270 24 6 10.8901 -1.0848 3.1481 25 6 2.5050 -0.9182 1.5045 26 1 -0.3634 0.4919 0.9023 27 1 -0.3635 0.5354 -0.8772 28 1 -0.3634 -1.0274 -0.0251 29 1 3.5920 1.7385 -0.0250 30 1 2.1243 2.2749 -0.8771 31 1 2.1650 2.2599 0.9022 32 1 1.9689 -1.8597 -1.6195 33 1 2.3739 -0.3048 -2.3956 34 1 4.4087 -1.7169 -2.1317 35 1 4.5230 -0.2443 -1.1406 36 1 5.2166 -2.3954 0.0092 37 1 3.5170 -2.8981 -0.0753 38 1 6.6097 -0.8770 0.7530 39 1 6.4034 -2.3997 1.6513 40 1 6.9678 -1.2291 3.7636 41 1 7.1737 0.2934 2.8646 42 1 8.1765 0.2016 4.7011 43 1 9.9161 0.9064 6.2938 44 1 12.2739 0.3396 5.8739 45 1 13.4056 -2.1084 3.6548 46 1 13.6982 0.6034 2.6597 47 1 11.1651 -1.6397 2.2633 48 1 1.9104 -1.8153 1.6774 49 1 2.4713 -0.2708 2.3806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:11 Heat of formation + Delta-G solvation = -115.477041 kcal Electronic energy + Delta-G solvation = -26735.273450 eV Core-core repulsion = 22979.184646 eV Total energy + Delta-G solvation = -3756.088805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.46802 -40.90950 -39.16604 -37.52669 -37.26051 -33.45291 -33.32445 -32.49353 -30.97662 -29.40701 -28.43255 -28.10751 -27.04380 -26.59744 -24.61866 -23.73205 -22.64187 -21.97652 -20.01037 -19.26669 -18.24309 -17.90741 -17.57452 -17.21057 -17.02322 -16.79617 -16.42411 -16.12618 -15.61709 -15.27070 -15.00584 -14.97648 -14.70628 -14.43085 -14.34524 -14.19859 -14.00553 -13.88790 -13.81010 -13.48890 -13.27319 -13.23910 -13.11397 -13.00569 -12.97607 -12.84417 -12.42662 -12.15657 -12.07188 -12.00110 -11.89974 -11.84191 -11.53110 -11.51992 -10.98379 -10.79628 -10.46199 -10.34179 -9.96652 -9.32856 -9.30582 0.16568 0.34635 1.16472 1.40437 1.47541 1.54521 1.58494 1.74769 1.88430 1.91421 2.00734 2.37252 2.56424 2.62720 3.46698 3.50460 3.66861 3.74982 3.83027 3.85218 4.00102 4.02597 4.15775 4.16919 4.24317 4.34310 4.50973 4.53957 4.54220 4.60891 4.62804 4.68835 4.70395 4.72948 4.74670 4.81340 4.83301 4.90636 4.95032 4.98973 5.08268 5.21896 5.31077 5.33349 5.39427 5.41410 5.47919 5.59485 5.61964 5.65985 6.27233 6.31551 6.69257 7.05846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.066 2.934 3 C -0.465 4.465 4 C -0.405 4.405 5 C -0.130 4.130 6 C 0.086 3.914 7 N -0.591 5.591 8 C 0.509 3.491 9 O -0.588 6.588 10 C -0.134 4.134 11 C 0.076 3.924 12 O -0.321 6.321 13 C 0.117 3.883 14 C -0.212 4.212 15 C -0.077 4.077 16 C -0.170 4.170 17 C -0.083 4.083 18 C -0.082 4.082 19 O -0.551 6.551 20 Si 0.989 3.011 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.250 1.250 24 C -0.135 4.135 25 C -0.204 4.204 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.134 0.866 43 H 0.148 0.852 44 H 0.136 0.864 45 H 0.126 0.874 46 H 0.389 0.611 47 H 0.136 0.864 48 H 0.084 0.916 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 -1.576 -3.993 4.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.256 2.744 3 C -0.571 4.571 4 C -0.492 4.492 5 C -0.168 4.168 6 C -0.036 4.036 7 N -0.323 5.323 8 C 0.298 3.702 9 O -0.469 6.469 10 C -0.173 4.173 11 C 0.000 4.000 12 O -0.235 6.235 13 C 0.072 3.928 14 C -0.231 4.231 15 C -0.095 4.095 16 C -0.188 4.188 17 C -0.084 4.084 18 C -0.192 4.192 19 O -0.358 6.358 20 Si 0.813 3.187 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.174 1.174 24 C -0.153 4.153 25 C -0.370 4.370 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.154 0.846 45 H 0.143 0.857 46 H 0.238 0.762 47 H 0.154 0.846 48 H 0.103 0.897 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.600 -1.717 -3.113 3.898 hybrid contribution -0.689 0.659 0.342 1.013 sum -2.288 -1.058 -2.771 3.746 Atomic orbital electron populations 1.26161 1.20436 1.05150 1.04685 0.78770 0.65809 0.64941 0.64845 1.26350 1.05825 1.20706 1.04193 1.26209 1.00257 1.08930 1.13802 1.21494 0.96940 1.00746 0.97596 1.21785 1.04443 0.94822 0.82538 1.47964 1.06292 1.55359 1.22685 1.20705 0.87862 0.78996 0.82593 1.90696 1.85153 1.42602 1.28483 1.21507 0.89324 1.05473 1.01034 1.22416 0.78541 1.00263 0.98745 1.85952 1.16169 1.74565 1.46835 1.19173 0.89104 0.94975 0.89517 1.21521 1.01386 1.03978 0.96228 1.21190 0.92067 0.97367 0.98865 1.21198 0.97335 1.01860 0.98401 1.20257 0.96322 0.97397 0.94393 1.25123 0.93149 1.02508 0.98404 1.86489 1.86535 1.24968 1.37833 0.85115 0.77493 0.80609 0.75448 1.18171 1.19946 1.17396 1.20361 0.89042 1.04224 1.01696 1.27212 0.85073 1.08057 1.16617 0.91549 0.90549 0.90317 0.92393 0.90564 0.92283 0.89086 0.89715 0.88805 0.91885 0.87808 0.88917 0.85631 0.85615 0.91879 0.91816 0.84798 0.83405 0.84646 0.85659 0.76162 0.84625 0.89711 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.36 8.65 113.37 0.98 3.34 16 2 Si 1.07 -6.56 11.99 68.60 0.82 -5.74 16 3 C -0.47 0.50 8.65 113.37 0.98 1.48 16 4 C -0.40 3.29 5.02 72.20 0.36 3.65 16 5 C -0.13 1.03 5.67 30.48 0.17 1.21 16 6 C 0.09 -0.63 5.65 86.08 0.49 -0.14 16 7 N -0.59 0.42 2.63 -626.71 -1.65 -1.23 16 8 C 0.51 2.13 7.70 87.66 0.67 2.80 16 9 O -0.59 -7.63 15.41 -3.04 -0.05 -7.68 16 10 C -0.13 0.17 4.42 29.85 0.13 0.30 16 11 C 0.08 0.26 4.03 71.98 0.29 0.55 16 12 O -0.32 -1.79 10.14 -92.44 -0.94 -2.72 16 13 C 0.12 0.74 6.69 22.51 0.15 0.89 16 14 C -0.21 -1.03 9.04 22.36 0.20 -0.83 16 15 C -0.08 -0.19 10.04 22.25 0.22 0.03 16 16 C -0.17 -0.35 8.67 22.28 0.19 -0.16 16 17 C -0.08 -0.23 5.35 -19.88 -0.11 -0.34 16 18 C -0.08 0.00 2.80 71.24 0.20 0.20 16 19 O -0.55 -0.75 12.83 -148.98 -1.91 -2.66 16 20 Si 0.99 -0.90 25.14 68.60 1.72 0.82 16 21 H -0.26 -0.08 7.11 99.48 0.71 0.63 16 22 H -0.27 -0.64 7.11 99.48 0.71 0.07 16 23 H -0.25 0.31 7.04 99.48 0.70 1.01 16 24 C -0.13 -0.69 9.62 22.37 0.22 -0.48 16 25 C -0.20 0.17 5.44 127.52 0.69 0.86 16 26 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 27 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 28 H 0.08 -0.49 7.96 -2.39 -0.02 -0.51 16 29 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 30 H 0.08 -0.18 7.96 -2.39 -0.02 -0.20 16 31 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 32 H 0.09 -0.88 7.99 -2.39 -0.02 -0.90 16 33 H 0.08 -0.70 7.99 -2.38 -0.02 -0.72 16 34 H 0.09 -0.94 8.14 -2.38 -0.02 -0.96 16 35 H 0.06 -0.41 7.89 -2.39 -0.02 -0.43 16 36 H 0.10 -1.07 5.93 -2.39 -0.01 -1.09 16 37 H 0.09 -0.88 8.10 -2.39 -0.02 -0.90 16 38 H 0.13 -0.64 8.01 -2.39 -0.02 -0.66 16 39 H 0.13 -0.65 7.60 -2.39 -0.02 -0.67 16 40 H 0.06 0.31 7.62 -2.38 -0.02 0.29 16 41 H 0.06 0.31 7.62 -2.39 -0.02 0.29 16 42 H 0.13 0.51 6.30 -2.91 -0.02 0.49 16 43 H 0.15 -0.29 8.06 -2.91 -0.02 -0.32 16 44 H 0.14 -0.17 4.86 -2.91 -0.01 -0.18 16 45 H 0.13 -0.20 7.96 -2.38 -0.02 -0.22 16 46 H 0.39 -1.95 8.70 -74.06 -0.64 -2.59 16 47 H 0.14 0.59 8.06 -2.91 -0.02 0.57 16 48 H 0.08 -0.26 8.00 -2.39 -0.02 -0.28 16 49 H 0.08 0.35 6.90 -2.39 -0.02 0.33 16 Total: 0.00 -18.30 390.34 4.89 -13.41 By element: Atomic # 1 Polarization: -8.60 SS G_CDS: 1.04 Total: -7.56 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.85 Total: 13.35 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -1.65 Total: -1.23 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -2.90 Total: -13.07 kcal Atomic # 14 Polarization: -7.46 SS G_CDS: 2.55 Total: -4.91 kcal Total: -18.30 4.89 -13.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.067 kcal (2) G-P(sol) polarization free energy of solvation -18.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds