Wall clock time and date at job start Tue Mar 9 2021 13:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86292 * 110.07537 * 2 1 4 4 C 1.87461 * 110.01134 * 238.60369 * 2 1 3 5 5 C 1.53647 * 107.32410 * 194.01563 * 4 2 1 6 6 C 1.52010 * 110.16444 * 60.24177 * 5 4 2 7 7 N 1.46334 * 111.97351 * 288.87599 * 6 5 4 8 8 C 1.34784 * 120.53126 * 250.94210 * 7 6 5 9 9 O 1.21274 * 119.99897 * 179.44754 * 8 7 6 10 10 C 1.50695 * 119.99635 * 359.71795 * 8 7 6 11 11 C 1.53002 * 109.47004 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47542 * 179.97438 * 11 10 8 13 13 O 1.42896 * 109.47504 * 180.02562 * 12 11 10 14 14 C 1.35900 * 116.99953 * 180.02562 * 13 12 11 15 15 C 1.38705 * 120.05822 * 359.72332 * 14 13 12 16 16 C 1.38171 * 119.94590 * 179.72630 * 15 14 13 17 17 C 1.38244 * 120.04979 * 0.57173 * 16 15 14 18 18 C 1.38282 * 120.11742 * 359.68262 * 17 16 15 19 19 C 1.50694 * 119.97851 * 180.02562 * 18 17 16 20 20 O 1.42908 * 109.47258 * 245.02470 * 19 18 17 21 21 Si 1.86308 * 109.46817 * 5.01653 * 19 18 17 22 22 H 1.48500 * 109.46910 * 60.00632 * 21 19 18 23 23 H 1.48500 * 109.47039 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47153 * 300.00501 * 21 19 18 25 25 C 1.38124 * 120.05357 * 0.04180 * 18 17 16 26 26 C 1.47794 * 118.94022 * 70.66396 * 7 6 5 27 27 H 1.09000 * 109.46749 * 298.60315 * 1 2 3 28 28 H 1.08991 * 109.47288 * 58.60007 * 1 2 3 29 29 H 1.09001 * 109.47128 * 178.60201 * 1 2 3 30 30 H 1.09005 * 109.47016 * 181.39708 * 3 2 1 31 31 H 1.09001 * 109.47694 * 301.39415 * 3 2 1 32 32 H 1.08996 * 109.47278 * 61.39830 * 3 2 1 33 33 H 1.09000 * 109.88859 * 313.47094 * 4 2 1 34 34 H 1.09007 * 109.88434 * 74.49020 * 4 2 1 35 35 H 1.08999 * 109.36180 * 180.53975 * 5 4 2 36 36 H 1.08996 * 109.36479 * 300.27535 * 5 4 2 37 37 H 1.09000 * 108.87188 * 168.23142 * 6 5 4 38 38 H 1.09010 * 108.91374 * 49.53989 * 6 5 4 39 39 H 1.09005 * 109.47403 * 300.00056 * 10 8 7 40 40 H 1.09002 * 109.47422 * 60.00295 * 10 8 7 41 41 H 1.08997 * 109.47244 * 300.00535 * 11 10 8 42 42 H 1.09002 * 109.46787 * 59.99910 * 11 10 8 43 43 H 1.08997 * 109.47365 * 300.00556 * 12 11 10 44 44 H 1.09004 * 109.46747 * 59.99765 * 12 11 10 45 45 H 1.08006 * 120.02644 * 0.02562 * 15 14 13 46 46 H 1.07996 * 119.97343 * 180.27904 * 16 15 14 47 47 H 1.08005 * 119.94027 * 179.70515 * 17 16 15 48 48 H 1.08988 * 109.47812 * 125.01904 * 19 18 17 49 49 H 0.96700 * 113.99604 * 59.99365 * 20 19 18 50 50 H 1.08001 * 120.03037 * 180.02562 * 25 18 17 51 51 H 1.09005 * 110.07534 * 64.71004 * 26 7 6 52 52 H 1.08991 * 110.08365 * 186.31779 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5025 1.7497 0.0000 4 6 2.5045 -0.9176 -1.5035 5 6 3.9983 -1.1911 -1.2697 6 6 4.1867 -2.0399 -0.0229 7 7 3.9034 -1.2874 1.1998 8 6 4.9023 -0.9317 2.0319 9 8 4.6576 -0.2995 3.0374 10 6 6.3237 -1.3145 1.7095 11 6 7.2537 -0.7924 2.8065 12 6 8.6969 -1.1815 2.4796 13 8 9.5654 -0.6944 3.5045 14 6 10.8916 -0.9562 3.3652 15 6 11.3470 -1.6721 2.2679 16 6 12.6965 -1.9321 2.1257 17 6 13.5913 -1.4895 3.0820 18 6 13.1394 -0.7801 4.1796 19 6 14.1176 -0.2987 5.2199 20 8 13.8574 -0.9590 6.4603 21 14 15.8539 -0.6827 4.6644 22 1 16.1244 0.0035 3.3755 23 1 16.8179 -0.2089 5.6898 24 1 16.0034 -2.1493 4.4853 25 6 11.7919 -0.5127 4.3234 26 6 2.5051 -0.9182 1.5045 27 1 -0.3633 0.4920 0.9023 28 1 -0.3633 0.5354 -0.8771 29 1 -0.3633 -1.0274 -0.0251 30 1 3.5922 1.7383 -0.0251 31 1 2.1245 2.2748 -0.8772 32 1 2.1652 2.2599 0.9022 33 1 1.9688 -1.8598 -1.6194 34 1 2.3739 -0.3048 -2.3955 35 1 4.4086 -1.7172 -2.1317 36 1 4.5231 -0.2446 -1.1406 37 1 5.2165 -2.3957 0.0092 38 1 3.5169 -2.8984 -0.0752 39 1 6.4035 -2.4000 1.6512 40 1 6.6097 -0.8773 0.7528 41 1 7.1739 0.2931 2.8644 42 1 6.9679 -1.2292 3.7634 43 1 8.7764 -2.2670 2.4220 44 1 8.9829 -0.7450 1.5226 45 1 10.6477 -2.0218 1.5227 46 1 13.0521 -2.4855 1.2692 47 1 14.6453 -1.6978 2.9715 48 1 14.0079 0.7777 5.3513 49 1 13.9370 -1.9218 6.4175 50 1 11.4394 0.0417 5.1806 51 1 1.9105 -1.8153 1.6774 52 1 2.4714 -0.2708 2.3806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:22 Heat of formation + Delta-G solvation = -122.498029 kcal Electronic energy + Delta-G solvation = -28259.487542 eV Core-core repulsion = 24347.556665 eV Total energy + Delta-G solvation = -3911.930877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.32425 -40.94505 -39.20204 -37.49734 -37.28198 -34.94753 -33.30114 -32.46358 -31.32212 -29.62163 -28.99635 -28.43142 -27.38215 -26.84696 -25.98065 -23.73803 -23.29506 -22.49647 -21.83796 -19.93171 -19.11815 -18.18040 -17.96283 -17.50310 -17.26842 -17.00701 -16.81687 -16.55516 -16.15267 -15.63935 -15.40127 -15.15529 -14.96189 -14.79610 -14.49350 -14.35840 -14.13868 -14.12238 -13.91971 -13.87986 -13.52356 -13.32023 -13.28161 -13.24121 -13.14350 -13.06000 -12.94300 -12.73584 -12.36203 -12.28030 -12.12181 -12.03930 -11.95429 -11.86858 -11.62048 -11.50480 -11.49591 -10.92619 -10.75399 -10.46279 -10.33552 -9.92860 -9.27720 -9.25572 0.20972 0.39001 1.15999 1.47334 1.48488 1.54408 1.73491 1.78152 1.89086 1.90953 2.07265 2.33690 2.56726 2.67144 3.46848 3.54002 3.69232 3.83005 3.85575 3.92772 4.01549 4.07280 4.14697 4.18482 4.21340 4.32733 4.37594 4.42599 4.50817 4.56096 4.57400 4.60537 4.69192 4.70235 4.70578 4.74436 4.80268 4.82280 4.92935 4.97789 4.98579 5.00415 5.10541 5.14643 5.27577 5.32814 5.36560 5.43533 5.44539 5.48702 5.59373 5.62841 5.73121 6.38568 6.42882 6.68082 7.17974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.062 2.938 3 C -0.465 4.465 4 C -0.402 4.402 5 C -0.129 4.129 6 C 0.087 3.913 7 N -0.596 5.596 8 C 0.498 3.502 9 O -0.595 6.595 10 C -0.129 4.129 11 C -0.101 4.101 12 C 0.059 3.941 13 O -0.338 6.338 14 C 0.116 3.884 15 C -0.206 4.206 16 C -0.073 4.073 17 C -0.174 4.174 18 C -0.084 4.084 19 C -0.089 4.089 20 O -0.554 6.554 21 Si 0.995 3.005 22 H -0.254 1.254 23 H -0.277 1.277 24 H -0.246 1.246 25 C -0.147 4.147 26 C -0.206 4.206 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.154 0.846 46 H 0.156 0.844 47 H 0.136 0.864 48 H 0.119 0.881 49 H 0.389 0.611 50 H 0.121 0.879 51 H 0.081 0.919 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -5.392 -9.742 11.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.253 2.747 3 C -0.571 4.571 4 C -0.490 4.490 5 C -0.168 4.168 6 C -0.035 4.035 7 N -0.328 5.328 8 C 0.288 3.712 9 O -0.476 6.476 10 C -0.169 4.169 11 C -0.139 4.139 12 C -0.015 4.015 13 O -0.252 6.252 14 C 0.071 3.929 15 C -0.224 4.224 16 C -0.091 4.091 17 C -0.191 4.191 18 C -0.085 4.085 19 C -0.198 4.198 20 O -0.361 6.361 21 Si 0.818 3.182 22 H -0.178 1.178 23 H -0.203 1.203 24 H -0.170 1.170 25 C -0.166 4.166 26 C -0.372 4.372 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.172 0.828 46 H 0.174 0.826 47 H 0.153 0.847 48 H 0.137 0.863 49 H 0.238 0.762 50 H 0.139 0.861 51 H 0.100 0.900 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.450 -4.553 -9.099 10.185 hybrid contribution -0.705 -0.052 0.537 0.888 sum -0.255 -4.604 -8.562 9.724 Atomic orbital electron populations 1.26167 1.20563 1.05128 1.04619 0.78821 0.65798 0.64979 0.65101 1.26357 1.05865 1.20782 1.04081 1.26161 1.00536 1.08819 1.13449 1.21503 0.96702 1.00822 0.97731 1.21780 1.04617 0.94676 0.82427 1.48046 1.06186 1.55657 1.22901 1.21266 0.88758 0.78803 0.82351 1.90694 1.85275 1.42539 1.29086 1.21605 0.89065 1.05073 1.01108 1.21153 0.91720 1.01863 0.99206 1.22977 0.88125 1.00147 0.90276 1.86057 1.14979 1.74973 1.49204 1.19226 0.83069 0.95511 0.95068 1.21588 0.98019 1.03738 0.99055 1.21264 0.92023 0.97079 0.98755 1.21211 1.00716 1.01639 0.95569 1.20214 0.93879 0.97894 0.96497 1.25220 1.07636 1.01331 0.85646 1.86498 1.93778 1.25369 1.30489 0.85041 0.73229 0.81012 0.78881 1.17830 1.20253 1.16979 1.20352 0.92041 1.04574 0.99632 1.27179 0.85720 1.07833 1.16418 0.91726 0.90496 0.90304 0.92337 0.90497 0.92556 0.89074 0.89658 0.88516 0.91855 0.87247 0.89251 0.85491 0.85477 0.92279 0.92367 0.89770 0.89723 0.82827 0.82616 0.84673 0.86296 0.76190 0.86094 0.90034 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.05 8.65 113.37 0.98 3.03 16 2 Si 1.06 -5.92 11.99 68.60 0.82 -5.10 16 3 C -0.47 0.15 8.65 113.37 0.98 1.13 16 4 C -0.40 3.43 5.03 72.20 0.36 3.79 16 5 C -0.13 1.20 5.67 30.49 0.17 1.37 16 6 C 0.09 -0.74 5.65 86.08 0.49 -0.25 16 7 N -0.60 0.35 2.64 -626.72 -1.65 -1.30 16 8 C 0.50 2.29 7.70 87.65 0.67 2.96 16 9 O -0.59 -9.24 15.41 -3.01 -0.05 -9.29 16 10 C -0.13 0.54 4.05 29.85 0.12 0.66 16 11 C -0.10 -0.18 4.87 30.59 0.15 -0.03 16 12 C 0.06 -0.09 4.74 71.98 0.34 0.25 16 13 O -0.34 -2.26 10.14 -92.42 -0.94 -3.19 16 14 C 0.12 0.63 6.69 22.51 0.15 0.78 16 15 C -0.21 -0.01 9.04 22.37 0.20 0.19 16 16 C -0.07 0.10 10.04 22.26 0.22 0.32 16 17 C -0.17 -0.10 8.67 22.28 0.19 0.10 16 18 C -0.08 -0.27 5.35 -19.88 -0.11 -0.37 16 19 C -0.09 -0.11 2.80 71.23 0.20 0.09 16 20 O -0.55 -1.73 12.83 -148.98 -1.91 -3.64 16 21 Si 1.00 -0.87 25.14 68.60 1.72 0.85 16 22 H -0.25 0.07 7.11 99.48 0.71 0.78 16 23 H -0.28 -0.77 7.11 99.48 0.71 -0.06 16 24 H -0.25 0.47 7.04 99.48 0.70 1.17 16 25 C -0.15 -0.97 9.62 22.37 0.22 -0.76 16 26 C -0.21 -0.07 5.44 127.52 0.69 0.63 16 27 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 28 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 29 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 30 H 0.06 0.08 7.96 -2.38 -0.02 0.07 16 31 H 0.08 -0.15 7.96 -2.39 -0.02 -0.17 16 32 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 33 H 0.09 -0.92 7.99 -2.39 -0.02 -0.94 16 34 H 0.08 -0.75 7.99 -2.38 -0.02 -0.77 16 35 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 36 H 0.06 -0.49 7.89 -2.39 -0.02 -0.51 16 37 H 0.11 -1.44 5.93 -2.39 -0.01 -1.45 16 38 H 0.09 -0.92 8.10 -2.38 -0.02 -0.94 16 39 H 0.13 -1.27 7.60 -2.38 -0.02 -1.28 16 40 H 0.13 -1.27 8.01 -2.39 -0.02 -1.29 16 41 H 0.06 0.38 8.10 -2.39 -0.02 0.36 16 42 H 0.06 0.38 8.10 -2.39 -0.02 0.36 16 43 H 0.08 -0.47 7.65 -2.39 -0.02 -0.49 16 44 H 0.08 -0.48 7.67 -2.38 -0.02 -0.50 16 45 H 0.15 -0.87 6.30 -2.91 -0.02 -0.89 16 46 H 0.16 -1.10 8.06 -2.91 -0.02 -1.13 16 47 H 0.14 -0.37 4.86 -2.91 -0.01 -0.39 16 48 H 0.12 0.06 7.96 -2.39 -0.02 0.04 16 49 H 0.39 -1.45 8.70 -74.06 -0.64 -2.09 16 50 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 51 H 0.08 -0.15 8.00 -2.38 -0.02 -0.17 16 52 H 0.07 0.46 6.90 -2.39 -0.02 0.45 16 Total: 0.00 -23.81 411.84 5.04 -18.77 By element: Atomic # 1 Polarization: -11.98 SS G_CDS: 1.00 Total: -10.98 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.04 Total: 13.89 kcal Atomic # 7 Polarization: 0.35 SS G_CDS: -1.65 Total: -1.30 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -2.90 Total: -16.13 kcal Atomic # 14 Polarization: -6.80 SS G_CDS: 2.55 Total: -4.25 kcal Total: -23.81 5.04 -18.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.729 kcal (2) G-P(sol) polarization free energy of solvation -23.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds