Wall clock time and date at job start Tue Mar 9 2021 13:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35994 * 117.00376 * 2 1 4 4 C 1.38524 * 120.06677 * 0.02562 * 3 2 1 5 5 C 1.38288 * 119.99484 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.92573 * 179.97438 * 5 4 3 7 7 O 1.42894 * 109.47151 * 300.00680 * 6 5 4 8 8 Si 1.86296 * 109.46978 * 180.02562 * 6 5 4 9 9 H 1.48503 * 109.47094 * 60.00544 * 8 6 5 10 10 H 1.48497 * 109.46934 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47393 * 300.00372 * 8 6 5 12 12 C 1.38208 * 120.14942 * 359.97438 * 5 4 3 13 13 C 1.38291 * 120.14290 * 359.75907 * 12 5 4 14 14 C 1.38518 * 119.99777 * 0.51444 * 13 12 5 15 15 O 1.36004 * 120.07102 * 179.74091 * 14 13 12 16 16 C 1.42897 * 116.99927 * 359.72561 * 15 14 13 17 17 C 1.50696 * 109.47180 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99767 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00108 * 180.02562 * 17 16 15 20 20 C 1.46335 * 120.53142 * 359.97438 * 19 17 16 21 21 C 1.52509 * 111.69021 * 250.87135 * 20 19 17 22 22 C 1.53641 * 110.12533 * 288.73467 * 21 20 19 23 23 Si 1.87460 * 107.32221 * 60.33705 * 22 21 20 24 24 C 1.86297 * 110.01475 * 72.58853 * 23 22 21 25 25 C 1.86300 * 110.01385 * 194.01645 * 23 22 21 26 26 C 1.47791 * 120.53388 * 179.97438 * 19 17 16 27 27 H 1.09003 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47386 * 299.99953 * 1 2 3 29 29 H 1.09006 * 109.46791 * 60.00251 * 1 2 3 30 30 H 1.07999 * 120.00603 * 359.95908 * 4 3 2 31 31 H 1.09004 * 109.46570 * 60.00887 * 6 5 4 32 32 H 0.96703 * 114.00366 * 299.99227 * 7 6 5 33 33 H 1.08003 * 119.92776 * 180.02562 * 12 5 4 34 34 H 1.08000 * 119.99762 * 180.25497 * 13 12 5 35 35 H 1.09006 * 109.46938 * 60.00007 * 16 15 14 36 36 H 1.08999 * 109.47168 * 300.00309 * 16 15 14 37 37 H 1.09009 * 109.03971 * 130.30441 * 20 19 17 38 38 H 1.08995 * 109.03882 * 11.44439 * 20 19 17 39 39 H 1.09000 * 109.36223 * 168.53577 * 21 20 19 40 40 H 1.09005 * 109.25343 * 48.86881 * 21 20 19 41 41 H 1.09003 * 109.88802 * 300.88576 * 22 21 20 42 42 H 1.08997 * 109.95004 * 179.82370 * 22 21 20 43 43 H 1.08998 * 109.47672 * 59.99747 * 24 23 22 44 44 H 1.09004 * 109.47326 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.46940 * 299.99563 * 24 23 22 46 46 H 1.09000 * 109.47168 * 60.00315 * 25 23 22 47 47 H 1.09005 * 109.47394 * 179.97438 * 25 23 22 48 48 H 1.09000 * 109.47161 * 300.00056 * 25 23 22 49 49 H 1.09003 * 110.07651 * 6.09003 * 26 19 17 50 50 H 1.08994 * 110.08310 * 244.48134 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3744 0.0005 5 6 1.9229 3.6057 0.0011 6 6 1.1021 4.8696 0.0011 7 8 0.2781 4.9025 -1.1659 8 14 2.2370 6.3470 0.0011 9 1 3.0936 6.3131 -1.2115 10 1 1.4282 7.5924 0.0017 11 1 3.0938 6.3131 1.2135 12 6 3.3030 3.6798 0.0016 13 6 4.0605 2.5229 0.0066 14 6 3.4363 1.2863 0.0004 15 8 4.1799 0.1476 0.0000 16 6 5.6007 0.3005 0.0002 17 6 6.2523 -1.0583 -0.0010 18 8 5.5673 -2.0592 -0.0013 19 7 7.5961 -1.1613 -0.0005 20 6 8.4336 0.0386 0.0005 21 6 9.1376 0.2358 -1.3380 22 6 10.2394 -0.8199 -1.5163 23 14 9.4135 -2.5021 -1.4698 24 6 8.4550 -2.7855 -3.0420 25 6 10.6957 -3.8362 -1.2534 26 6 8.2474 -2.4879 -0.0010 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 0.2148 2.3193 0.0003 31 1 0.4731 4.8943 0.8910 32 1 0.7721 4.8832 -1.9970 33 1 3.7908 4.6434 0.0024 34 1 5.1388 2.5835 0.0112 35 1 5.9069 0.8500 0.8904 36 1 5.9070 0.8507 -0.8896 37 1 9.1834 -0.0517 0.7866 38 1 7.8090 0.9081 0.2052 39 1 9.5818 1.2307 -1.3695 40 1 8.4104 0.1390 -2.1442 41 1 10.9641 -0.7402 -0.7060 42 1 10.7385 -0.6783 -2.4750 43 1 9.1334 -2.7427 -3.8940 44 1 7.9783 -3.7651 -3.0054 45 1 7.6917 -2.0142 -3.1462 46 1 11.2336 -3.6751 -0.3192 47 1 10.2062 -4.8098 -1.2271 48 1 11.3974 -3.8044 -2.0869 49 1 7.4986 -3.2724 -0.1104 50 1 8.8079 -2.6301 0.9229 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:12 Heat of formation + Delta-G solvation = -140.096786 kcal Electronic energy + Delta-G solvation = -29759.431874 eV Core-core repulsion = 25683.593285 eV Total energy + Delta-G solvation = -4075.838589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.166 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87270 -40.99163 -39.39033 -38.89322 -37.49549 -36.91881 -33.34025 -32.13028 -31.51501 -30.41228 -29.27507 -28.49953 -28.42450 -27.45111 -26.41225 -25.88081 -23.50861 -22.70472 -22.45635 -20.22012 -19.86537 -18.56607 -18.32201 -17.93266 -17.58481 -17.33161 -16.84765 -16.74525 -16.08121 -16.00447 -15.95050 -15.83186 -15.38875 -15.05157 -14.87932 -14.72023 -14.36503 -14.18277 -13.96013 -13.89619 -13.75706 -13.60626 -13.51833 -13.44552 -13.24040 -13.12001 -12.98450 -12.63842 -12.56013 -12.23323 -12.16240 -12.09492 -12.04873 -12.01174 -11.98080 -11.59168 -11.51622 -10.95246 -10.78497 -10.41209 -10.33636 -9.80191 -9.35608 -8.93973 0.14679 0.24270 1.21101 1.31465 1.41519 1.51936 1.56658 1.71992 1.88602 1.96216 1.98955 2.29678 2.45030 2.53760 2.56269 3.31574 3.49959 3.68992 3.76860 3.83255 3.94892 3.98761 4.02597 4.13069 4.15237 4.24368 4.31900 4.35394 4.47053 4.53444 4.59359 4.64628 4.66797 4.68191 4.69167 4.72408 4.81495 4.83701 4.90242 4.96822 4.98268 5.07225 5.08562 5.31933 5.33767 5.38949 5.47377 5.56969 5.60091 5.62165 5.94265 6.23735 6.50064 6.71718 7.03818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.078 3.922 4 C -0.147 4.147 5 C -0.117 4.117 6 C -0.082 4.082 7 O -0.554 6.554 8 Si 0.988 3.012 9 H -0.245 1.245 10 H -0.280 1.280 11 H -0.251 1.251 12 C -0.122 4.122 13 C -0.161 4.161 14 C 0.082 3.918 15 O -0.315 6.315 16 C 0.036 3.964 17 C 0.501 3.499 18 O -0.578 6.578 19 N -0.588 5.588 20 C 0.082 3.918 21 C -0.130 4.130 22 C -0.400 4.400 23 Si 1.066 2.934 24 C -0.468 4.468 25 C -0.456 4.456 26 C -0.206 4.206 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.148 0.852 31 H 0.122 0.878 32 H 0.389 0.611 33 H 0.148 0.852 34 H 0.171 0.829 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.970 6.405 -0.478 9.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.033 3.967 4 C -0.166 4.166 5 C -0.118 4.118 6 C -0.191 4.191 7 O -0.361 6.361 8 Si 0.811 3.189 9 H -0.168 1.168 10 H -0.205 1.205 11 H -0.175 1.175 12 C -0.140 4.140 13 C -0.179 4.179 14 C 0.036 3.964 15 O -0.229 6.229 16 C -0.042 4.042 17 C 0.290 3.710 18 O -0.457 6.457 19 N -0.321 5.321 20 C -0.039 4.039 21 C -0.168 4.168 22 C -0.488 4.488 23 Si 1.256 2.744 24 C -0.573 4.573 25 C -0.564 4.564 26 C -0.370 4.370 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.140 0.860 32 H 0.238 0.762 33 H 0.165 0.835 34 H 0.189 0.811 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.656 6.189 -0.009 9.089 hybrid contribution -0.583 -0.883 -0.289 1.096 sum 6.074 5.307 -0.299 8.071 Atomic orbital electron populations 1.23304 0.76669 1.05201 1.02294 1.86195 1.23147 1.26624 1.89054 1.18687 0.89770 0.85783 1.02504 1.21029 1.00733 0.90206 1.04604 1.20233 0.94160 0.95310 1.02053 1.25115 1.00683 1.01295 0.92029 1.86479 1.36558 1.96887 1.16199 0.85142 0.76968 0.75040 0.81701 1.16846 1.20517 1.17467 1.21013 0.92887 0.98892 1.01217 1.21318 1.02075 0.89483 1.05054 1.18614 0.88374 0.86415 1.02948 1.86233 1.18131 1.29195 1.89310 1.22831 0.79409 0.95516 1.06440 1.20630 0.83064 0.90736 0.76618 1.90730 1.63667 1.40222 1.51092 1.47924 1.03799 1.08468 1.71958 1.22003 0.95718 0.86207 0.99967 1.21604 0.97743 1.01212 0.96266 1.26132 1.03604 1.12973 1.06057 0.78797 0.64301 0.68417 0.62888 1.26393 1.08890 1.03845 1.18181 1.26152 1.12204 1.12464 1.05565 1.27302 1.07283 0.85544 1.16910 0.87224 0.91535 0.91557 0.83463 0.85981 0.76177 0.83495 0.81130 0.85839 0.85830 0.88288 0.87590 0.88117 0.91935 0.88707 0.89444 0.90358 0.92557 0.92639 0.90174 0.91759 0.90361 0.91087 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.34 -4.10 10.28 -79.65 -0.82 -4.92 16 3 C 0.08 0.72 6.70 22.57 0.15 0.87 16 4 C -0.15 -0.60 8.60 22.35 0.19 -0.41 16 5 C -0.12 -0.08 5.39 -19.86 -0.11 -0.19 16 6 C -0.08 0.16 2.82 71.24 0.20 0.36 16 7 O -0.55 0.21 12.76 -148.98 -1.90 -1.69 16 8 Si 0.99 -3.55 25.06 68.60 1.72 -1.83 16 9 H -0.25 1.10 7.11 99.48 0.71 1.81 16 10 H -0.28 -0.18 7.11 99.48 0.71 0.53 16 11 H -0.25 0.87 7.11 99.48 0.71 1.57 16 12 C -0.12 0.16 8.66 22.28 0.19 0.36 16 13 C -0.16 0.07 9.04 22.35 0.20 0.27 16 14 C 0.08 0.61 6.70 22.57 0.15 0.76 16 15 O -0.31 -3.58 9.46 -67.19 -0.64 -4.22 16 16 C 0.04 0.05 3.58 71.23 0.25 0.30 16 17 C 0.50 3.99 7.77 87.66 0.68 4.67 16 18 O -0.58 -11.61 15.93 16.00 0.25 -11.36 16 19 N -0.59 -0.19 2.63 -625.85 -1.64 -1.83 16 20 C 0.08 -0.72 5.68 86.25 0.49 -0.23 16 21 C -0.13 1.26 5.69 30.65 0.17 1.44 16 22 C -0.40 3.70 5.03 72.20 0.36 4.06 16 23 Si 1.07 -6.13 11.99 68.60 0.82 -5.31 16 24 C -0.47 -0.04 8.65 113.37 0.98 0.94 16 25 C -0.46 2.24 8.65 113.37 0.98 3.22 16 26 C -0.21 -0.10 5.43 127.52 0.69 0.59 16 27 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.07 0.01 7.66 -2.39 -0.02 0.00 16 29 H 0.07 0.03 7.66 -2.38 -0.02 0.01 16 30 H 0.15 0.28 6.30 -2.91 -0.02 0.26 16 31 H 0.12 -0.39 7.96 -2.38 -0.02 -0.41 16 32 H 0.39 -2.59 8.70 -74.06 -0.64 -3.24 16 33 H 0.15 -0.89 4.87 -2.91 -0.01 -0.90 16 34 H 0.17 -1.43 6.30 -2.91 -0.02 -1.45 16 35 H 0.12 -0.72 7.10 -2.38 -0.02 -0.73 16 36 H 0.12 -0.72 7.55 -2.39 -0.02 -0.74 16 37 H 0.10 -1.13 8.11 -2.38 -0.02 -1.15 16 38 H 0.11 -1.41 5.93 -2.39 -0.01 -1.43 16 39 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 40 H 0.06 -0.49 7.89 -2.38 -0.02 -0.51 16 41 H 0.09 -1.07 7.99 -2.39 -0.02 -1.09 16 42 H 0.09 -0.84 7.99 -2.39 -0.02 -0.85 16 43 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 44 H 0.06 0.16 7.96 -2.38 -0.02 0.14 16 45 H 0.05 0.14 7.96 -2.38 -0.02 0.12 16 46 H 0.08 -0.50 7.96 -2.39 -0.02 -0.52 16 47 H 0.06 -0.19 7.96 -2.38 -0.02 -0.21 16 48 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 49 H 0.07 0.51 6.90 -2.39 -0.02 0.49 16 50 H 0.09 -0.21 8.00 -2.39 -0.02 -0.23 16 Total: 0.00 -28.94 398.60 5.57 -23.37 By element: Atomic # 1 Polarization: -11.46 SS G_CDS: 1.06 Total: -10.40 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 6.71 Total: 18.19 kcal Atomic # 7 Polarization: -0.19 SS G_CDS: -1.64 Total: -1.83 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -3.10 Total: -22.19 kcal Atomic # 14 Polarization: -9.68 SS G_CDS: 2.54 Total: -7.14 kcal Total: -28.94 5.57 -23.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.727 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds