Wall clock time and date at job start Tue Mar 9 2021 13:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86299 * 109.99736 * 2 1 4 4 C 1.87461 * 110.01612 * 121.34577 * 2 1 3 5 5 C 1.53646 * 107.32522 * 72.58451 * 4 2 1 6 6 C 1.52510 * 110.12260 * 60.33608 * 5 4 2 7 7 N 1.46334 * 111.69316 * 288.73289 * 6 5 4 8 8 C 1.34776 * 120.53835 * 250.91608 * 7 6 5 9 9 O 1.21690 * 120.00234 * 179.59848 * 8 7 6 10 10 C 1.46677 * 119.99681 * 359.59862 * 8 7 6 11 11 C 1.37870 * 126.23742 * 207.64866 * 10 8 7 12 12 C 1.39833 * 107.09030 * 179.97438 * 11 10 8 13 13 C 1.35451 * 107.86385 * 0.02562 * 12 11 10 14 14 C 1.50696 * 125.56309 * 180.02562 * 13 12 11 15 15 O 1.42901 * 109.47093 * 119.97403 * 14 13 12 16 16 Si 1.86298 * 109.47193 * 359.97253 * 14 13 12 17 17 H 1.48494 * 109.47086 * 60.00374 * 16 14 13 18 18 H 1.48509 * 109.47029 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46885 * 299.99744 * 16 14 13 20 20 N 1.35536 * 108.87256 * 359.72705 * 13 12 11 21 21 C 1.47798 * 118.93200 * 70.89391 * 7 6 5 22 22 H 1.09002 * 109.46772 * 298.65146 * 1 2 3 23 23 H 1.09006 * 109.47286 * 178.65623 * 1 2 3 24 24 H 1.08995 * 109.47663 * 58.65421 * 1 2 3 25 25 H 1.09006 * 109.47134 * 59.99702 * 3 2 1 26 26 H 1.08996 * 109.47053 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46688 * 300.00585 * 3 2 1 28 28 H 1.09000 * 109.88536 * 192.03686 * 4 2 1 29 29 H 1.08999 * 109.88624 * 313.12936 * 4 2 1 30 30 H 1.08998 * 109.36225 * 180.54041 * 5 4 2 31 31 H 1.09006 * 109.35797 * 300.14123 * 5 4 2 32 32 H 1.08998 * 109.03315 * 49.30557 * 6 5 4 33 33 H 1.09005 * 109.03209 * 168.24081 * 6 5 4 34 34 H 1.08001 * 126.45133 * 359.96897 * 11 10 8 35 35 H 1.07999 * 126.07009 * 179.97438 * 12 11 10 36 36 H 1.09008 * 109.46871 * 239.97034 * 14 13 12 37 37 H 0.96693 * 114.00281 * 299.99477 * 15 14 13 38 38 H 0.97001 * 125.67758 * 180.30443 * 20 13 12 39 39 H 1.09001 * 110.07643 * 186.06237 * 21 7 6 40 40 H 1.08993 * 110.07910 * 64.45680 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5001 1.7507 0.0000 4 6 2.5047 -0.9163 1.5043 5 6 2.2488 -2.4133 1.2718 6 6 2.9861 -2.8838 0.0223 7 7 2.3717 -2.3594 -1.1979 8 6 1.6948 -3.1761 -2.0293 9 8 1.1815 -2.7283 -3.0377 10 6 1.5768 -4.6047 -1.7186 11 6 1.4201 -5.6268 -2.6305 12 6 1.3520 -6.8193 -1.9034 13 6 1.4651 -6.5117 -0.5891 14 6 1.4431 -7.5008 0.5476 15 8 2.6717 -7.4204 1.2729 16 14 1.2346 -9.2230 -0.1317 17 1 2.3668 -9.5375 -1.0395 18 1 1.2122 -10.1977 0.9885 19 1 -0.0422 -9.3065 -0.8853 20 7 1.6079 -5.1698 -0.4637 21 6 2.5050 -0.9196 -1.5037 22 1 -0.3633 0.4928 0.9019 23 1 -0.3634 -1.0274 -0.0241 24 1 -0.3634 0.5346 -0.8776 25 1 2.1414 2.2679 0.8900 26 1 3.5900 1.7406 -0.0005 27 1 2.1414 2.2678 -0.8900 28 1 3.5735 -0.7364 1.6199 29 1 1.9732 -0.5834 2.3958 30 1 2.6020 -2.9785 2.1342 31 1 1.1793 -2.5817 1.1451 32 1 4.0214 -2.5465 0.0724 33 1 2.9684 -3.9731 -0.0118 34 1 1.3611 -5.5255 -3.7041 35 1 1.2300 -7.8098 -2.3164 36 1 0.6119 -7.2700 1.2140 37 1 3.4557 -7.6143 0.7412 38 1 1.7128 -4.6876 0.3714 39 1 1.9084 -0.6664 -2.3802 40 1 3.5516 -0.6691 -1.6769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:43:38 Heat of formation + Delta-G solvation = -43.764676 kcal Electronic energy + Delta-G solvation = -21026.320237 eV Core-core repulsion = 17965.898773 eV Total energy + Delta-G solvation = -3060.421464 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.131 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.79345 -40.43179 -37.71396 -37.66681 -33.47326 -32.46958 -31.51854 -29.45229 -28.46808 -28.27980 -27.26666 -25.76617 -23.10746 -22.30548 -21.74481 -20.75284 -19.04617 -18.16175 -17.42236 -16.81811 -16.38729 -16.29413 -15.66652 -15.42908 -15.05636 -14.79191 -14.66870 -14.35175 -14.19095 -14.12857 -13.97072 -13.83500 -13.71317 -13.51404 -13.25525 -13.15819 -13.06518 -12.29974 -12.20549 -12.16847 -12.08700 -11.82295 -11.66162 -11.23318 -10.86994 -10.63108 -10.42429 -10.10141 -9.59435 -9.18314 0.30572 1.11086 1.41140 1.56107 1.58465 1.62971 1.69858 1.83989 1.90756 1.99308 2.08772 2.33832 2.51957 3.43642 3.48706 3.60605 3.72056 3.94827 4.17634 4.27455 4.32785 4.44032 4.53517 4.55331 4.65583 4.68949 4.73900 4.80522 4.83139 4.90339 4.91106 4.92609 5.03969 5.16232 5.28853 5.42335 5.51411 5.56113 5.60569 5.73760 6.15350 6.30767 6.62260 6.94512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.067 2.933 3 C -0.453 4.453 4 C -0.400 4.400 5 C -0.137 4.137 6 C 0.068 3.932 7 N -0.588 5.588 8 C 0.575 3.425 9 O -0.576 6.576 10 C -0.061 4.061 11 C -0.123 4.123 12 C -0.213 4.213 13 C 0.023 3.977 14 C -0.062 4.062 15 O -0.549 6.549 16 Si 1.010 2.990 17 H -0.251 1.251 18 H -0.269 1.269 19 H -0.261 1.261 20 N -0.515 5.515 21 C -0.207 4.207 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.143 0.857 35 H 0.159 0.841 36 H 0.134 0.866 37 H 0.393 0.607 38 H 0.431 0.569 39 H 0.078 0.922 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 -0.579 6.336 7.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.257 2.743 3 C -0.562 4.562 4 C -0.487 4.487 5 C -0.175 4.175 6 C -0.054 4.054 7 N -0.320 5.320 8 C 0.365 3.635 9 O -0.456 6.456 10 C -0.174 4.174 11 C -0.150 4.150 12 C -0.237 4.237 13 C -0.095 4.095 14 C -0.172 4.172 15 O -0.356 6.356 16 Si 0.832 3.168 17 H -0.175 1.175 18 H -0.193 1.193 19 H -0.185 1.185 20 N -0.118 5.118 21 C -0.372 4.372 22 H 0.098 0.902 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.161 0.839 35 H 0.176 0.824 36 H 0.151 0.849 37 H 0.243 0.757 38 H 0.277 0.723 39 H 0.097 0.903 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.454 -0.891 6.074 6.612 hybrid contribution 0.183 0.621 -0.608 0.888 sum 2.637 -0.270 5.466 6.075 Atomic orbital electron populations 1.26373 1.22944 1.03439 1.04488 0.78789 0.65053 0.65958 0.64496 1.26111 1.07070 1.18063 1.04912 1.26151 1.07652 1.00861 1.14049 1.21695 1.00492 0.98155 0.97156 1.22248 0.99348 1.00484 0.83327 1.47897 1.52754 1.08826 1.22486 1.17482 0.78748 0.84412 0.82867 1.90805 1.50014 1.76168 1.28576 1.20275 1.18603 0.92597 0.85925 1.21421 1.02946 0.91297 0.99292 1.20901 1.11474 0.99325 0.91951 1.21480 1.06732 0.84355 0.96932 1.24937 0.91244 1.06373 0.94631 1.86484 1.15863 1.93520 1.39723 0.84778 0.81245 0.72341 0.78422 1.17458 1.19342 1.18469 1.42726 1.54646 1.06718 1.07717 1.27379 1.07291 0.85273 1.17234 0.90222 0.92879 0.92114 0.90247 0.90150 0.91438 0.88565 0.88977 0.87937 0.91958 0.88047 0.88990 0.83891 0.82352 0.84873 0.75715 0.72340 0.90318 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 0.12 8.65 113.37 0.98 1.10 16 2 Si 1.07 -6.03 11.99 68.60 0.82 -5.21 16 3 C -0.45 2.43 8.65 113.37 0.98 3.41 16 4 C -0.40 3.34 5.03 72.20 0.36 3.71 16 5 C -0.14 1.02 4.89 30.65 0.15 1.17 16 6 C 0.07 -0.30 5.17 86.25 0.45 0.14 16 7 N -0.59 -1.58 2.63 -630.22 -1.66 -3.24 16 8 C 0.58 5.79 7.63 86.45 0.66 6.45 16 9 O -0.58 -10.71 16.42 -4.32 -0.07 -10.78 16 10 C -0.06 -0.40 6.37 40.35 0.26 -0.14 16 11 C -0.12 -0.85 10.76 22.57 0.24 -0.60 16 12 C -0.21 -0.45 9.32 22.01 0.21 -0.25 16 13 C 0.02 -0.02 6.47 41.34 0.27 0.25 16 14 C -0.06 0.31 3.08 71.23 0.22 0.53 16 15 O -0.55 2.84 12.88 -148.98 -1.92 0.92 16 16 Si 1.01 -4.35 25.83 68.60 1.77 -2.58 16 17 H -0.25 0.93 7.11 99.48 0.71 1.64 16 18 H -0.27 0.41 7.11 99.48 0.71 1.11 16 19 H -0.26 0.51 7.11 99.48 0.71 1.22 16 20 N -0.51 -0.09 4.75 -171.93 -0.82 -0.91 16 21 C -0.21 -0.19 5.44 127.52 0.69 0.50 16 22 H 0.08 -0.18 7.96 -2.39 -0.02 -0.20 16 23 H 0.05 0.14 7.96 -2.38 -0.02 0.12 16 24 H 0.06 0.11 7.96 -2.39 -0.02 0.10 16 25 H 0.08 -0.47 7.96 -2.38 -0.02 -0.49 16 26 H 0.08 -0.52 7.96 -2.39 -0.02 -0.54 16 27 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 28 H 0.10 -0.99 7.99 -2.39 -0.02 -1.01 16 29 H 0.09 -0.85 7.99 -2.39 -0.02 -0.87 16 30 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 31 H 0.06 -0.37 7.83 -2.38 -0.02 -0.39 16 32 H 0.10 -0.74 8.11 -2.39 -0.02 -0.76 16 33 H 0.09 -0.44 4.02 -2.38 -0.01 -0.45 16 34 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.16 -0.22 6.17 -2.91 -0.02 -0.24 16 36 H 0.13 -0.98 7.96 -2.38 -0.02 -1.00 16 37 H 0.39 -4.25 8.70 -74.06 -0.64 -4.90 16 38 H 0.43 -1.78 5.65 -92.71 -0.52 -2.31 16 39 H 0.08 0.49 6.90 -2.39 -0.02 0.48 16 40 H 0.09 -0.17 8.00 -2.39 -0.02 -0.19 16 Total: 0.00 -18.80 320.57 4.24 -14.57 By element: Atomic # 1 Polarization: -9.69 SS G_CDS: 0.64 Total: -9.05 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 5.47 Total: 16.28 kcal Atomic # 7 Polarization: -1.67 SS G_CDS: -2.47 Total: -4.14 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.99 Total: -9.87 kcal Atomic # 14 Polarization: -10.38 SS G_CDS: 2.59 Total: -7.79 kcal Total: -18.80 4.24 -14.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.197 kcal (2) G-P(sol) polarization free energy of solvation -18.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds