Wall clock time and date at job start Tue Mar 9 2021 13:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33816 * 122.45244 * 2 1 4 4 C 1.50700 * 124.52109 * 359.97438 * 3 2 1 5 5 O 1.42893 * 109.47362 * 124.06656 * 4 3 2 6 6 Si 1.86304 * 109.46965 * 244.06737 * 4 3 2 7 7 H 1.48500 * 109.46851 * 59.99978 * 6 4 3 8 8 H 1.48498 * 109.47091 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46738 * 300.00166 * 6 4 3 10 10 S 1.70614 * 110.95553 * 180.02562 * 3 2 1 11 11 C 1.75840 * 91.56311 * 359.97438 * 10 3 2 12 12 C 1.46577 * 125.45611 * 180.02562 * 11 10 3 13 13 O 1.21705 * 119.99869 * 170.99876 * 12 11 10 14 14 N 1.34780 * 120.00253 * 350.99682 * 12 11 10 15 15 C 1.46340 * 120.53088 * 345.95004 * 14 12 11 16 16 C 1.52505 * 111.69117 * 109.10885 * 15 14 12 17 17 C 1.53649 * 110.12292 * 71.26139 * 16 15 14 18 18 Si 1.87453 * 107.32593 * 299.66274 * 17 16 15 19 19 C 1.86307 * 110.01130 * 165.98056 * 18 17 16 20 20 C 1.86291 * 110.01677 * 287.41289 * 18 17 16 21 21 C 1.47796 * 120.53164 * 165.67097 * 14 12 11 22 22 C 1.36640 * 109.08321 * 0.26306 * 11 10 3 23 23 H 1.08997 * 109.47158 * 83.09104 * 1 2 3 24 24 H 1.09000 * 109.47444 * 203.09359 * 1 2 3 25 25 H 1.08999 * 109.47055 * 323.09510 * 1 2 3 26 26 H 1.08999 * 109.46878 * 4.06501 * 4 3 2 27 27 H 0.96707 * 113.99950 * 59.99906 * 5 4 3 28 28 H 1.08997 * 109.03445 * 229.67796 * 15 14 12 29 29 H 1.08998 * 109.03605 * 348.61392 * 15 14 12 30 30 H 1.08995 * 109.36078 * 191.46456 * 16 15 14 31 31 H 1.08998 * 109.35948 * 311.06511 * 16 15 14 32 32 H 1.09010 * 109.88204 * 59.12399 * 17 16 15 33 33 H 1.09001 * 109.88730 * 180.12754 * 17 16 15 34 34 H 1.09002 * 109.47199 * 60.00596 * 19 18 17 35 35 H 1.09007 * 109.47104 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47510 * 299.99679 * 19 18 17 37 37 H 1.08999 * 109.47189 * 60.00036 * 20 18 17 38 38 H 1.09000 * 109.47328 * 180.02562 * 20 18 17 39 39 H 1.09003 * 109.47236 * 300.00112 * 20 18 17 40 40 H 1.08995 * 110.07883 * 353.93205 * 21 14 12 41 41 H 1.08995 * 110.07533 * 115.54016 * 21 14 12 42 42 H 1.08001 * 123.35293 * 179.73409 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6356 2.5161 -0.0006 5 8 2.1433 3.2500 1.1155 6 14 2.1002 3.3877 -1.5802 7 1 1.5725 2.6250 -2.7400 8 1 1.5189 4.7541 -1.5811 9 1 3.5791 3.4783 -1.6789 10 16 3.8970 0.7891 -0.0007 11 6 3.5936 -0.9429 -0.0002 12 6 4.6230 -1.9864 0.0000 13 8 4.3092 -3.1506 0.1653 14 7 5.9170 -1.6566 -0.1827 15 6 6.2829 -0.3305 -0.6818 16 6 6.9338 0.5204 0.4036 17 6 8.3414 -0.0095 0.7175 18 14 8.1524 -1.7755 1.3169 19 6 9.8080 -2.6298 1.3159 20 6 7.4250 -1.7925 3.0318 21 6 6.9894 -2.6264 0.1234 22 6 2.2446 -1.1602 -0.0055 23 1 -0.3633 0.1236 -1.0202 24 1 -0.3634 -0.9453 0.4031 25 1 -0.3633 0.8217 0.6171 26 1 0.5501 2.4495 0.0719 27 1 3.1054 3.3488 1.1164 28 1 6.9806 -0.4430 -1.5116 29 1 5.3855 0.1753 -1.0382 30 1 7.0044 1.5523 0.0600 31 1 6.3240 0.4830 1.3063 32 1 8.9553 0.0129 -0.1830 33 1 8.8021 0.5998 1.4951 34 1 10.4917 -2.0981 1.9777 35 1 9.6879 -3.6554 1.6652 36 1 10.2131 -2.6362 0.3040 37 1 6.4465 -1.3126 3.0162 38 1 7.3194 -2.8228 3.3716 39 1 8.0840 -1.2520 3.7114 40 1 6.5668 -3.5177 0.5871 41 1 7.5229 -2.8945 -0.7884 42 1 1.8019 -2.1452 -0.0105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:00 Heat of formation + Delta-G solvation = -69.020618 kcal Electronic energy + Delta-G solvation = -22685.572951 eV Core-core repulsion = 19494.870705 eV Total energy + Delta-G solvation = -3190.702246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 313.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13708 -39.76404 -37.73600 -37.48737 -33.42047 -32.61306 -29.78824 -29.53044 -28.57693 -28.39478 -27.12577 -25.65632 -23.96861 -22.72235 -20.78072 -20.13777 -19.13487 -18.13869 -17.49606 -17.12535 -16.63404 -15.95511 -15.86669 -15.54808 -15.26401 -15.09839 -14.71078 -14.46586 -14.21275 -14.16146 -14.08799 -13.88239 -13.52226 -13.41442 -13.28454 -13.22792 -13.12393 -13.06937 -12.96021 -12.50990 -12.37923 -12.23770 -12.07487 -12.04982 -11.64697 -11.50503 -11.17926 -10.83343 -10.79795 -10.36582 -9.75731 -9.34798 -9.30152 -0.70992 0.29328 0.74846 0.97001 1.23525 1.37275 1.50675 1.56607 1.72252 1.87139 1.88465 1.98040 2.15083 2.55367 3.34966 3.40361 3.59279 3.76134 4.00369 4.07831 4.23845 4.38101 4.41250 4.44752 4.51676 4.60489 4.69809 4.72413 4.74944 4.79341 4.82646 4.83221 4.86076 4.93528 4.97900 5.03282 5.25894 5.29069 5.33513 5.38992 5.47793 5.58066 5.63043 6.14668 6.51615 6.90728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.113 4.113 3 C -0.263 4.263 4 C -0.050 4.050 5 O -0.544 6.544 6 Si 0.950 3.050 7 H -0.257 1.257 8 H -0.250 1.250 9 H -0.225 1.225 10 S 0.274 5.726 11 C -0.292 4.292 12 C 0.579 3.421 13 O -0.577 6.577 14 N -0.593 5.593 15 C 0.077 3.923 16 C -0.137 4.137 17 C -0.397 4.397 18 Si 1.061 2.939 19 C -0.452 4.452 20 C -0.466 4.466 21 C -0.204 4.204 22 C -0.055 4.055 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.135 0.865 27 H 0.386 0.614 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 6.008 -1.585 7.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.125 4.125 3 C -0.382 4.382 4 C -0.161 4.161 5 O -0.351 6.351 6 Si 0.769 3.231 7 H -0.181 1.181 8 H -0.174 1.174 9 H -0.147 1.147 10 S 0.544 5.456 11 C -0.412 4.412 12 C 0.368 3.632 13 O -0.459 6.459 14 N -0.324 5.324 15 C -0.047 4.047 16 C -0.175 4.175 17 C -0.485 4.485 18 Si 1.252 2.748 19 C -0.561 4.561 20 C -0.572 4.572 21 C -0.368 4.368 22 C -0.089 4.089 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.152 0.848 27 H 0.235 0.765 28 H 0.129 0.871 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.162 6.745 -2.122 8.755 hybrid contribution -1.470 -1.934 0.314 2.450 sum 3.692 4.810 -1.808 6.328 Atomic orbital electron populations 1.20674 0.88231 1.03789 1.03468 1.18758 0.98975 0.90493 1.04283 1.25431 1.02656 1.01059 1.09024 1.24719 1.03348 0.87461 1.00572 1.86569 1.27855 1.74720 1.45954 0.85717 0.82865 0.79846 0.74639 1.18102 1.17367 1.14678 1.82885 0.99513 0.95776 1.67379 1.24516 0.97799 0.98276 1.20602 1.17379 0.82489 0.86805 0.76538 1.90787 1.81750 1.20730 1.52664 1.47784 1.04272 1.15464 1.64920 1.22233 1.01577 0.81643 0.99200 1.21740 0.96568 1.00777 0.98444 1.26139 0.98223 1.16567 1.07572 0.78851 0.64348 0.67675 0.63948 1.26107 1.16771 1.07799 1.05394 1.26356 1.06670 1.03975 1.20206 1.27399 0.98517 0.98960 1.11967 1.20781 0.91400 1.00246 0.96518 0.89806 0.91011 0.90156 0.84793 0.76533 0.87058 0.89813 0.87469 0.91394 0.88443 0.88660 0.90135 0.91583 0.90191 0.92639 0.92218 0.90066 0.90632 0.89451 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.10 9.53 71.24 0.68 0.78 16 2 C -0.11 -0.34 5.78 -21.05 -0.12 -0.46 16 3 C -0.26 -0.17 4.64 24.68 0.11 -0.06 16 4 C -0.05 0.11 2.82 71.24 0.20 0.31 16 5 O -0.54 0.68 12.88 -148.98 -1.92 -1.24 16 6 Si 0.95 -2.99 27.84 68.60 1.91 -1.08 16 7 H -0.26 0.14 7.11 99.48 0.71 0.85 16 8 H -0.25 0.24 7.11 99.48 0.71 0.94 16 9 H -0.22 1.25 7.11 99.48 0.71 1.96 16 10 S 0.27 -0.33 16.12 -56.49 -0.91 -1.24 16 11 C -0.29 -1.92 6.13 24.07 0.15 -1.77 16 12 C 0.58 6.05 7.58 86.42 0.65 6.71 16 13 O -0.58 -10.98 16.41 -4.36 -0.07 -11.05 16 14 N -0.59 -1.90 2.64 -630.33 -1.66 -3.56 16 15 C 0.08 -0.31 5.03 86.25 0.43 0.12 16 16 C -0.14 1.04 4.74 30.65 0.15 1.18 16 17 C -0.40 3.62 5.02 72.20 0.36 3.98 16 18 Si 1.06 -6.35 11.97 68.60 0.82 -5.53 16 19 C -0.45 2.58 8.65 113.37 0.98 3.56 16 20 C -0.47 0.44 8.65 113.37 0.98 1.42 16 21 C -0.20 -0.20 5.37 127.52 0.68 0.48 16 22 C -0.06 -0.38 9.79 21.72 0.21 -0.16 16 23 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 24 H 0.07 -0.08 8.10 -2.39 -0.02 -0.09 16 25 H 0.08 -0.21 6.90 -2.39 -0.02 -0.23 16 26 H 0.13 -0.49 6.12 -2.39 -0.01 -0.50 16 27 H 0.39 -3.09 8.37 -74.05 -0.62 -3.71 16 28 H 0.11 -0.87 8.11 -2.39 -0.02 -0.89 16 29 H 0.08 -0.35 3.85 -21.78 -0.08 -0.43 16 30 H 0.11 -1.23 8.14 -2.39 -0.02 -1.25 16 31 H 0.07 -0.41 7.39 -2.39 -0.02 -0.43 16 32 H 0.10 -1.11 7.99 -2.38 -0.02 -1.13 16 33 H 0.09 -0.99 7.99 -2.39 -0.02 -1.01 16 34 H 0.08 -0.52 7.96 -2.39 -0.02 -0.54 16 35 H 0.06 -0.26 7.96 -2.38 -0.02 -0.28 16 36 H 0.08 -0.54 7.96 -2.39 -0.02 -0.56 16 37 H 0.05 0.10 7.96 -2.39 -0.02 0.08 16 38 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 39 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 40 H 0.07 0.48 7.04 -2.39 -0.02 0.46 16 41 H 0.09 -0.15 7.99 -2.39 -0.02 -0.17 16 42 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 Total: 0.00 -18.68 344.86 4.72 -13.96 By element: Atomic # 1 Polarization: -7.42 SS G_CDS: 1.08 Total: -6.34 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 5.48 Total: 16.09 kcal Atomic # 7 Polarization: -1.90 SS G_CDS: -1.66 Total: -3.56 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.99 Total: -12.29 kcal Atomic # 14 Polarization: -9.34 SS G_CDS: 2.73 Total: -6.61 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -0.91 Total: -1.24 kcal Total: -18.68 4.72 -13.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.064 kcal (2) G-P(sol) polarization free energy of solvation -18.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds