Wall clock time and date at job start Tue Mar 9 2021 13:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86299 * 109.99621 * 2 1 4 4 C 1.87465 * 110.01315 * 121.34142 * 2 1 3 5 5 C 1.53646 * 107.32235 * 165.98491 * 4 2 1 6 6 C 1.52507 * 110.12176 * 299.66264 * 5 4 2 7 7 N 1.46340 * 111.69236 * 71.26622 * 6 5 4 8 8 C 1.34777 * 120.53013 * 109.11142 * 7 6 5 9 9 O 1.21278 * 119.99854 * 180.02562 * 8 7 6 10 10 C 1.50703 * 120.00161 * 359.97438 * 8 7 6 11 11 N 1.46505 * 109.47064 * 180.02562 * 10 8 7 12 12 C 1.36831 * 125.06217 * 264.69680 * 11 10 8 13 13 C 1.34237 * 109.93415 * 179.81485 * 12 11 10 14 14 C 1.50701 * 126.49653 * 180.13665 * 13 12 11 15 15 O 1.42895 * 109.47159 * 105.35885 * 14 13 12 16 16 Si 1.86302 * 109.47243 * 345.35514 * 14 13 12 17 17 H 1.48500 * 109.47017 * 180.02562 * 16 14 13 18 18 H 1.48496 * 109.47003 * 300.00231 * 16 14 13 19 19 H 1.48496 * 109.47057 * 60.00004 * 16 14 13 20 20 C 1.46491 * 107.00148 * 0.43632 * 13 12 11 21 21 C 1.39587 * 134.03542 * 179.76777 * 20 13 12 22 22 C 1.36664 * 119.76402 * 180.02562 * 21 20 13 23 23 C 1.38790 * 120.52841 * 359.94422 * 22 21 20 24 24 C 1.37788 * 120.66457 * 0.02562 * 23 22 21 25 25 C 1.37692 * 125.05919 * 85.00099 * 11 10 8 26 26 C 1.47789 * 118.93307 * 289.37895 * 7 6 5 27 27 H 1.08997 * 109.46970 * 298.66096 * 1 2 3 28 28 H 1.09001 * 109.47127 * 58.65712 * 1 2 3 29 29 H 1.09000 * 109.46885 * 178.65796 * 1 2 3 30 30 H 1.08997 * 109.47412 * 181.34454 * 3 2 1 31 31 H 1.08999 * 109.47006 * 301.33960 * 3 2 1 32 32 H 1.09000 * 109.47364 * 61.34253 * 3 2 1 33 33 H 1.08995 * 109.88434 * 46.53129 * 4 2 1 34 34 H 1.09004 * 109.94781 * 285.46770 * 4 2 1 35 35 H 1.08998 * 109.36106 * 179.46450 * 5 4 2 36 36 H 1.09003 * 109.36343 * 59.85854 * 5 4 2 37 37 H 1.09003 * 109.03866 * 310.69304 * 6 5 4 38 38 H 1.09005 * 108.97590 * 191.79608 * 6 5 4 39 39 H 1.09002 * 109.47152 * 60.00245 * 10 8 7 40 40 H 1.09001 * 109.46980 * 300.00345 * 10 8 7 41 41 H 1.07995 * 125.03325 * 359.97438 * 12 11 10 42 42 H 1.09007 * 109.47047 * 225.35808 * 14 13 12 43 43 H 0.96703 * 113.99835 * 179.97438 * 15 14 13 44 44 H 1.08006 * 120.11875 * 359.97438 * 21 20 13 45 45 H 1.07994 * 119.73644 * 179.97438 * 22 21 20 46 46 H 1.08001 * 119.66767 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.10816 * 179.97438 * 24 23 22 48 48 H 1.09006 * 110.07402 * 173.66404 * 26 7 6 49 49 H 1.08993 * 110.08221 * 295.26479 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5001 1.7507 0.0000 4 6 2.5046 -0.9162 1.5044 5 6 3.9983 -1.1898 1.2708 6 6 4.1861 -2.0446 0.0218 7 7 3.9034 -1.2883 -1.1987 8 6 4.9021 -0.9339 -2.0314 9 8 4.6569 -0.3068 -3.0400 10 6 6.3237 -1.3159 -1.7084 11 7 7.2141 -0.8176 -2.7598 12 6 7.6442 -1.5453 -3.8358 13 6 8.4434 -0.7920 -4.6077 14 6 9.1183 -1.2200 -5.8853 15 8 8.4449 -0.6317 -6.9999 16 14 9.0539 -3.0763 -6.0300 17 1 9.7195 -3.4981 -7.2887 18 1 9.7537 -3.6876 -4.8717 19 1 7.6377 -3.5228 -6.0446 20 6 8.5410 0.5226 -3.9688 21 6 9.2132 1.7055 -4.2807 22 6 9.0978 2.7891 -3.4560 23 6 8.3165 2.7235 -2.3107 24 6 7.6440 1.5660 -1.9842 25 6 7.7474 0.4509 -2.8090 26 6 2.5058 -0.9143 -1.5005 27 1 -0.3633 0.4929 0.9017 28 1 -0.3633 0.5346 -0.8777 29 1 -0.3633 -1.0274 -0.0241 30 1 3.5898 1.7408 -0.0241 31 1 2.1221 2.2749 -0.8777 32 1 2.1612 2.2607 0.9018 33 1 1.9689 -1.8582 1.6211 34 1 2.3751 -0.3032 2.3964 35 1 4.4087 -1.7151 2.1332 36 1 4.5235 -0.2432 1.1431 37 1 3.5141 -2.9013 0.0730 38 1 5.2154 -2.4019 -0.0117 39 1 6.4037 -2.4013 -1.6484 40 1 6.6096 -0.8771 -0.7525 41 1 7.3780 -2.5726 -4.0358 42 1 10.1579 -0.8923 -5.8746 43 1 8.8266 -0.8642 -7.8575 44 1 9.8229 1.7640 -5.1703 45 1 9.6184 3.7040 -3.6975 46 1 8.2348 3.5883 -1.6690 47 1 7.0388 1.5247 -1.0907 48 1 2.4729 -0.2644 -2.3750 49 1 1.9083 -1.8090 -1.6751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:46:36 Heat of formation + Delta-G solvation = -29.076078 kcal Electronic energy + Delta-G solvation = -28976.778849 eV Core-core repulsion = 25221.240671 eV Total energy + Delta-G solvation = -3755.538178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.56872 -40.83995 -38.09684 -37.71815 -37.41417 -34.22806 -33.34749 -31.60921 -30.31901 -29.78023 -29.20865 -28.45219 -27.58691 -26.54794 -25.25937 -23.72978 -22.82549 -22.41009 -20.66918 -20.14959 -18.56752 -18.39002 -18.11870 -17.76618 -16.75674 -16.73899 -16.44112 -15.93873 -15.65554 -15.19679 -15.12534 -14.92368 -14.81358 -14.66614 -14.52656 -14.27598 -14.17632 -13.98529 -13.89747 -13.63893 -13.50831 -13.31904 -13.25941 -13.15511 -13.00405 -12.73366 -12.56314 -12.49654 -12.14974 -12.10762 -12.03827 -11.96936 -11.69604 -11.56931 -11.07272 -10.85250 -10.54662 -10.36126 -10.18372 -9.37015 -9.17563 -8.64678 0.11745 0.62891 1.19021 1.27475 1.36953 1.47565 1.54364 1.66261 1.71212 1.82657 1.86873 1.92307 2.17489 2.54109 2.92458 3.35441 3.56008 3.62521 3.76371 3.81971 3.93074 4.02685 4.03681 4.13039 4.22119 4.27098 4.39368 4.44660 4.51447 4.57057 4.66156 4.67064 4.68764 4.70346 4.77416 4.78025 4.80115 4.86996 4.89994 4.94294 5.05996 5.13201 5.30259 5.37859 5.45104 5.50013 5.57352 5.59101 5.64992 5.72715 5.73853 6.11583 6.20575 6.31492 6.90595 7.02594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.066 2.934 3 C -0.466 4.466 4 C -0.400 4.400 5 C -0.130 4.130 6 C 0.084 3.916 7 N -0.588 5.588 8 C 0.481 3.519 9 O -0.577 6.577 10 C 0.087 3.913 11 N -0.468 5.468 12 C 0.058 3.942 13 C -0.181 4.181 14 C -0.054 4.054 15 O -0.570 6.570 16 Si 0.987 3.013 17 H -0.250 1.250 18 H -0.248 1.248 19 H -0.270 1.270 20 C -0.116 4.116 21 C -0.083 4.083 22 C -0.153 4.153 23 C -0.105 4.105 24 C -0.137 4.137 25 C 0.090 3.910 26 C -0.205 4.205 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.185 0.815 42 H 0.081 0.919 43 H 0.393 0.607 44 H 0.127 0.873 45 H 0.141 0.859 46 H 0.147 0.853 47 H 0.130 0.870 48 H 0.068 0.932 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 -5.084 7.381 8.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.256 2.744 3 C -0.571 4.571 4 C -0.488 4.488 5 C -0.168 4.168 6 C -0.038 4.038 7 N -0.321 5.321 8 C 0.269 3.731 9 O -0.456 6.456 10 C -0.038 4.038 11 N -0.151 5.151 12 C -0.068 4.068 13 C -0.188 4.188 14 C -0.163 4.163 15 O -0.378 6.378 16 Si 0.808 3.192 17 H -0.173 1.173 18 H -0.172 1.172 19 H -0.194 1.194 20 C -0.121 4.121 21 C -0.102 4.102 22 C -0.172 4.172 23 C -0.124 4.124 24 C -0.157 4.157 25 C -0.015 4.015 26 C -0.371 4.371 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.175 0.825 40 H 0.162 0.838 41 H 0.202 0.798 42 H 0.099 0.901 43 H 0.242 0.758 44 H 0.145 0.855 45 H 0.159 0.841 46 H 0.165 0.835 47 H 0.148 0.852 48 H 0.086 0.914 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.548 -5.559 7.442 9.305 hybrid contribution 0.033 0.642 -0.991 1.181 sum -0.515 -4.917 6.451 8.128 Atomic orbital electron populations 1.26179 1.20609 1.05130 1.04656 0.78747 0.65779 0.64876 0.64979 1.26369 1.05731 1.20907 1.04090 1.26139 1.00410 1.08905 1.13320 1.21594 0.96823 1.00732 0.97644 1.21973 1.04570 0.94854 0.82357 1.48015 1.06020 1.55264 1.22828 1.21484 0.88616 0.79853 0.83196 1.90772 1.84584 1.41811 1.28466 1.22054 0.85322 1.04567 0.91830 1.43416 1.40132 1.09510 1.22035 1.21868 0.97736 0.98530 0.88618 1.19870 1.06962 0.93678 0.98321 1.24249 0.97046 1.10754 0.84296 1.86537 1.58980 1.75329 1.17003 0.85243 0.79914 0.72463 0.81568 1.17303 1.17157 1.19439 1.19344 1.01715 0.95109 0.95901 1.20488 0.98658 0.91437 0.99581 1.20944 1.01444 0.99098 0.95678 1.21145 0.96376 0.97339 0.97519 1.20235 1.03654 0.91425 1.00432 1.18449 0.98225 0.86847 0.97982 1.27178 0.85318 1.07968 1.16634 0.90382 0.91862 0.90256 0.92465 0.92745 0.90393 0.88856 0.89526 0.88341 0.91840 0.88494 0.87424 0.82511 0.83771 0.79779 0.90058 0.75762 0.85507 0.84092 0.83540 0.85224 0.91353 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.10 8.65 113.37 0.98 3.08 16 2 Si 1.07 -6.28 11.97 68.60 0.82 -5.45 16 3 C -0.47 0.13 8.65 113.37 0.98 1.11 16 4 C -0.40 3.73 5.02 72.20 0.36 4.10 16 5 C -0.13 1.31 5.68 30.65 0.17 1.49 16 6 C 0.08 -0.81 5.68 86.25 0.49 -0.32 16 7 N -0.59 0.69 2.64 -625.83 -1.65 -0.96 16 8 C 0.48 2.53 7.77 87.66 0.68 3.22 16 9 O -0.58 -10.08 15.85 -3.02 -0.05 -10.13 16 10 C 0.09 -0.13 4.84 85.63 0.41 0.29 16 11 N -0.47 -3.35 2.27 -519.98 -1.18 -4.53 16 12 C 0.06 0.44 9.89 83.00 0.82 1.26 16 13 C -0.18 -1.87 5.61 -18.63 -0.10 -1.97 16 14 C -0.05 -0.27 3.05 71.24 0.22 -0.05 16 15 O -0.57 -4.10 12.86 -148.98 -1.92 -6.01 16 16 Si 0.99 0.73 26.07 68.60 1.79 2.52 16 17 H -0.25 0.03 7.11 99.48 0.71 0.74 16 18 H -0.25 -0.08 7.11 99.48 0.71 0.63 16 19 H -0.27 -0.99 7.04 99.48 0.70 -0.29 16 20 C -0.12 -1.51 6.35 -20.20 -0.13 -1.64 16 21 C -0.08 -0.88 10.05 22.23 0.22 -0.66 16 22 C -0.15 -1.14 9.97 22.03 0.22 -0.92 16 23 C -0.10 -0.68 10.01 22.30 0.22 -0.46 16 24 C -0.14 -1.11 10.00 22.37 0.22 -0.89 16 25 C 0.09 1.00 6.80 39.03 0.27 1.27 16 26 C -0.21 0.00 5.41 127.52 0.69 0.69 16 27 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 28 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 29 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 30 H 0.06 0.09 7.96 -2.39 -0.02 0.07 16 31 H 0.05 0.15 7.96 -2.39 -0.02 0.14 16 32 H 0.08 -0.16 7.96 -2.39 -0.02 -0.18 16 33 H 0.09 -1.04 7.99 -2.39 -0.02 -1.06 16 34 H 0.09 -0.82 7.99 -2.38 -0.02 -0.84 16 35 H 0.10 -1.26 8.14 -2.39 -0.02 -1.28 16 36 H 0.06 -0.55 7.90 -2.39 -0.02 -0.57 16 37 H 0.10 -1.15 8.11 -2.39 -0.02 -1.17 16 38 H 0.11 -1.55 5.93 -2.38 -0.01 -1.57 16 39 H 0.16 -1.48 7.56 -2.39 -0.02 -1.50 16 40 H 0.14 -1.06 8.02 -2.39 -0.02 -1.08 16 41 H 0.19 0.33 6.29 -2.91 -0.02 0.31 16 42 H 0.08 0.13 7.96 -2.38 -0.02 0.11 16 43 H 0.39 -1.20 8.74 -74.06 -0.65 -1.85 16 44 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 45 H 0.14 0.36 8.06 -2.91 -0.02 0.33 16 46 H 0.15 0.14 8.06 -2.91 -0.02 0.12 16 47 H 0.13 0.46 8.06 -2.91 -0.02 0.43 16 48 H 0.07 0.48 6.90 -2.38 -0.02 0.47 16 49 H 0.08 -0.21 7.99 -2.39 -0.02 -0.23 16 Total: 0.00 -28.93 395.88 5.59 -23.34 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: 1.04 Total: -8.36 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.73 Total: 9.58 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -2.83 Total: -5.49 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -1.96 Total: -16.14 kcal Atomic # 14 Polarization: -5.54 SS G_CDS: 2.61 Total: -2.93 kcal Total: -28.93 5.59 -23.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.737 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds