Wall clock time and date at job start Tue Mar 9 2021 14:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 102.99904 * 2 1 4 4 C 1.52992 * 109.47465 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.85189 * 43.80272 * 4 3 2 6 6 C 1.53776 * 113.61751 * 175.00317 * 4 3 2 7 7 C 1.53786 * 87.08437 * 139.98242 * 6 4 3 8 8 H 1.08999 * 113.61149 * 219.94056 * 7 6 4 9 9 N 1.46499 * 113.61553 * 89.11173 * 7 6 4 10 10 C 1.34774 * 119.99479 * 155.00007 * 9 7 6 11 11 O 1.21586 * 120.00690 * 0.02562 * 10 9 7 12 12 C 1.47580 * 119.99471 * 180.02562 * 10 9 7 13 13 C 1.36498 * 120.00744 * 180.02562 * 12 10 9 14 14 N 1.35949 * 120.50644 * 180.02562 * 13 12 10 15 15 C 1.37001 * 132.41582 * 179.97438 * 14 13 12 16 16 C 1.50693 * 126.42743 * 0.02562 * 15 14 13 17 17 O 1.42907 * 109.47661 * 330.00684 * 16 15 14 18 18 Si 1.86298 * 109.47618 * 210.00374 * 16 15 14 19 19 C 1.35008 * 107.14364 * 180.27939 * 15 14 13 20 20 N 1.33588 * 108.65170 * 359.60466 * 19 15 14 21 21 C 1.32404 * 109.22493 * 0.40296 * 20 19 15 22 22 C 1.41252 * 132.12032 * 179.71646 * 21 20 19 23 23 Br 1.89105 * 120.25040 * 0.02562 * 22 21 20 24 24 C 1.35697 * 119.49486 * 180.02562 * 22 21 20 25 25 C 1.53781 * 87.07759 * 334.56575 * 7 6 4 26 26 H 1.08997 * 109.47185 * 60.00138 * 1 2 3 27 27 H 1.09005 * 109.47066 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47193 * 299.99379 * 1 2 3 29 29 H 1.09005 * 109.46934 * 59.99684 * 3 2 1 30 30 H 1.09004 * 109.47429 * 300.00631 * 3 2 1 31 31 H 1.08994 * 113.61385 * 25.43162 * 6 4 3 32 32 H 1.09001 * 113.69325 * 254.53801 * 6 4 3 33 33 H 0.96993 * 120.00101 * 335.00996 * 9 7 6 34 34 H 1.08002 * 119.74723 * 0.02562 * 13 12 10 35 35 H 1.09000 * 109.46936 * 90.00307 * 16 15 14 36 36 H 0.96697 * 114.00527 * 179.97438 * 17 16 15 37 37 H 1.48506 * 109.99834 * 298.68714 * 18 16 15 38 38 H 1.48502 * 110.00011 * 59.99978 * 18 16 15 39 39 H 1.08000 * 125.67218 * 179.71827 * 19 15 14 40 40 H 1.08001 * 120.23367 * 179.97438 * 24 22 21 41 41 H 1.08999 * 113.61602 * 139.97904 * 25 7 6 42 42 H 1.08999 * 113.61666 * 270.88704 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9401 -0.0006 5 1 4.2443 1.2675 -0.6962 6 6 4.1960 3.4042 -0.1234 7 6 5.2874 3.0702 0.9072 8 1 5.4527 3.8603 1.6397 9 7 6.5312 2.5812 0.3072 10 6 7.6983 2.7227 0.9662 11 8 7.7190 3.2558 2.0588 12 6 8.9514 2.2306 0.3615 13 6 10.1335 2.3734 1.0289 14 7 11.2939 1.9243 0.4812 15 6 12.5907 1.9391 0.9228 16 6 13.0844 2.5027 2.2302 17 8 12.2430 3.5865 2.6299 18 14 14.8309 3.1168 2.0219 19 6 13.3441 1.3589 -0.0357 20 7 12.5454 0.9855 -1.0393 21 6 11.2973 1.3205 -0.7510 22 6 10.0860 1.1622 -1.4602 23 35 10.0783 0.3321 -3.1593 24 6 8.9280 1.6103 -0.9129 25 6 4.3619 1.9483 1.4068 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8030 2.2371 0.8900 30 1 1.8030 2.2372 -0.8899 31 1 3.4591 4.1214 0.2379 32 1 4.5885 3.6601 -1.1076 33 1 6.5148 2.1557 -0.5643 34 1 10.1471 2.8468 1.9996 35 1 13.0614 1.7246 2.9931 36 1 12.5020 3.9981 3.4656 37 1 15.7220 1.9927 1.6373 38 1 14.8758 4.1782 0.9843 39 1 14.4142 1.2184 0.0035 40 1 7.9951 1.4958 -1.4449 41 1 4.8881 1.0273 1.6576 42 1 3.6702 2.2676 2.1865 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16535148_12335884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:13:09 Heat of formation + Delta-G solvation = 63.335423 kcal Electronic energy + Delta-G solvation = -27818.328371 eV Core-core repulsion = 23747.148751 eV Total energy + Delta-G solvation = -4071.179619 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.024 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.37924 -41.58763 -39.84887 -38.43452 -37.90181 -35.58765 -34.78231 -32.68119 -32.01435 -30.57823 -30.30502 -29.61696 -26.93638 -26.69586 -25.98223 -24.20518 -23.75541 -22.62089 -22.09395 -20.35710 -19.34657 -18.74527 -18.59385 -17.98579 -17.49432 -17.44300 -17.01771 -16.43152 -16.30516 -16.08920 -15.89586 -15.58292 -15.45038 -15.39165 -15.17227 -14.94349 -14.66881 -14.30601 -14.21414 -13.90664 -13.61616 -13.42997 -13.39163 -13.28471 -13.15114 -12.83967 -12.82713 -12.10484 -12.10034 -11.70114 -11.55848 -11.51095 -11.43220 -11.34157 -11.22285 -10.87199 -10.77654 -10.28611 -10.07894 -9.16277 -8.68403 -5.00732 -0.98205 -0.47176 0.10692 0.75797 0.88067 1.06351 1.37746 1.62303 1.67445 1.69330 1.88614 2.01383 2.14722 2.66542 2.95335 3.11569 3.29320 3.34278 3.43094 3.48905 3.57286 3.74899 3.80231 3.82926 3.97626 4.22314 4.27876 4.29030 4.30732 4.34453 4.36182 4.42695 4.45115 4.54802 4.73991 4.79930 4.84667 4.87381 4.87934 5.03721 5.06485 5.08155 5.14196 5.45953 5.52639 6.25802 6.30695 6.73833 6.92188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.325 6.325 3 C -0.062 4.062 4 C -0.092 4.092 5 H 0.098 0.902 6 C -0.120 4.120 7 C 0.114 3.886 8 H 0.097 0.903 9 N -0.690 5.690 10 C 0.584 3.416 11 O -0.560 6.560 12 C -0.174 4.174 13 C 0.171 3.829 14 N -0.357 5.357 15 C -0.044 4.044 16 C -0.052 4.052 17 O -0.570 6.570 18 Si 0.823 3.177 19 C 0.016 3.984 20 N -0.494 5.494 21 C 0.225 3.775 22 C -0.085 4.085 23 Br 0.008 6.992 24 C -0.019 4.019 25 C -0.142 4.142 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.414 0.586 34 H 0.197 0.803 35 H 0.110 0.890 36 H 0.415 0.585 37 H -0.272 1.272 38 H -0.309 1.309 39 H 0.202 0.798 40 H 0.187 0.813 41 H 0.061 0.939 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 3.248 3.679 5.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.099 6.099 3 C -0.210 4.210 4 C -0.111 4.111 5 H 0.116 0.884 6 C -0.159 4.159 7 C 0.009 3.991 8 H 0.115 0.885 9 N -0.342 5.342 10 C 0.370 3.630 11 O -0.440 6.440 12 C -0.181 4.181 13 C 0.045 3.955 14 N -0.030 5.030 15 C -0.155 4.155 16 C -0.160 4.160 17 O -0.382 6.382 18 Si 0.725 3.275 19 C -0.133 4.133 20 N -0.213 5.213 21 C -0.021 4.021 22 C -0.167 4.167 23 Br 0.093 6.907 24 C -0.045 4.045 25 C -0.181 4.181 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.252 0.748 34 H 0.214 0.786 35 H 0.127 0.873 36 H 0.269 0.731 37 H -0.198 1.198 38 H -0.237 1.237 39 H 0.218 0.782 40 H 0.204 0.796 41 H 0.080 0.920 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.911 1.977 2.064 3.438 hybrid contribution -1.390 0.720 0.298 1.593 sum -3.301 2.697 2.362 4.873 Atomic orbital electron populations 1.23395 0.91891 1.07074 1.05708 1.87239 1.10129 1.14346 1.98188 1.23434 0.99456 0.92232 1.05853 1.22370 0.92445 0.98155 0.98157 0.88356 1.23363 0.96760 0.95810 0.99995 1.21938 0.82461 0.97393 0.97301 0.88513 1.45396 1.05525 1.60562 1.22674 1.17441 0.83078 0.78193 0.84257 1.90833 1.86941 1.44818 1.21363 1.19298 0.93512 1.08409 0.96912 1.22299 0.82198 0.91600 0.99433 1.42730 1.07083 1.37951 1.15276 1.21693 0.81336 1.11011 1.01459 1.24729 1.06863 0.92997 0.91448 1.86325 1.56037 1.48506 1.47298 0.94101 0.69986 0.77679 0.85745 1.22676 1.00869 1.00447 0.89272 1.70777 0.98601 1.24124 1.27790 1.20752 0.94750 1.00674 0.85926 1.20565 0.91364 1.08282 0.96479 1.96829 1.98958 1.78525 1.16390 1.21385 0.98165 0.92112 0.92845 1.23504 0.98469 0.98875 0.97221 0.89604 0.87935 0.89711 0.89106 0.88816 0.86898 0.89050 0.74758 0.78646 0.87260 0.73107 1.19793 1.23665 0.78188 0.79556 0.92048 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.39 10.76 113.37 1.22 1.61 16 2 S -0.32 -0.27 22.37 -56.49 -1.26 -1.54 16 3 C -0.06 0.31 5.78 71.98 0.42 0.73 16 4 C -0.09 0.57 3.53 -10.27 -0.04 0.53 16 5 H 0.10 -0.55 8.13 -2.39 -0.02 -0.57 16 6 C -0.12 1.03 7.39 31.12 0.23 1.26 16 7 C 0.11 -0.44 4.32 45.52 0.20 -0.24 16 8 H 0.10 -0.05 7.46 -2.39 -0.02 -0.07 16 9 N -0.69 2.43 5.21 -443.15 -2.31 0.12 16 10 C 0.58 1.53 7.76 86.71 0.67 2.20 16 11 O -0.56 -5.34 15.87 -3.99 -0.06 -5.41 16 12 C -0.17 -0.40 5.84 -20.35 -0.12 -0.52 16 13 C 0.17 0.88 9.91 83.65 0.83 1.70 16 14 N -0.36 -2.83 2.93 -337.71 -0.99 -3.82 16 15 C -0.04 -0.26 6.28 41.01 0.26 0.00 16 16 C -0.05 0.14 3.05 71.23 0.22 0.36 16 17 O -0.57 1.84 10.88 -148.98 -1.62 0.22 16 18 Si 0.82 -4.08 31.27 68.60 2.15 -1.93 16 19 C 0.02 0.14 10.44 83.68 0.87 1.01 16 20 N -0.49 -6.38 11.30 -194.10 -2.19 -8.57 16 21 C 0.22 2.33 7.59 134.19 1.02 3.35 16 22 C -0.08 -0.48 6.24 22.42 0.14 -0.34 16 23 Br 0.01 0.04 33.72 -20.37 -0.69 -0.65 16 24 C -0.02 0.00 9.26 22.55 0.21 0.21 16 25 C -0.14 0.51 7.43 31.12 0.23 0.74 16 26 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.09 -0.56 7.85 -2.39 -0.02 -0.58 16 30 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.11 -1.17 8.10 -2.39 -0.02 -1.19 16 32 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H 0.41 -3.60 6.73 -92.71 -0.62 -4.23 16 34 H 0.20 0.86 6.19 -2.91 -0.02 0.84 16 35 H 0.11 -0.81 7.96 -2.39 -0.02 -0.83 16 36 H 0.42 -5.84 8.74 -74.06 -0.65 -6.49 16 37 H -0.27 0.37 6.91 99.48 0.69 1.06 16 38 H -0.31 -1.51 7.11 99.48 0.71 -0.80 16 39 H 0.20 0.69 6.76 -2.91 -0.02 0.67 16 40 H 0.19 -1.46 6.44 -2.91 -0.02 -1.48 16 41 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.10 -0.41 7.90 -2.39 -0.02 -0.43 16 Total: 0.00 -25.22 384.26 -0.79 -26.01 By element: Atomic # 1 Polarization: -16.86 SS G_CDS: -0.16 Total: -17.02 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 6.36 Total: 12.59 kcal Atomic # 7 Polarization: -6.77 SS G_CDS: -5.50 Total: -12.27 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -1.68 Total: -5.19 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.15 Total: -1.93 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -1.26 Total: -1.54 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -0.69 Total: -0.65 kcal Total: -25.22 -0.79 -26.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16535148_12335884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.350 kcal (2) G-P(sol) polarization free energy of solvation -25.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds