Wall clock time and date at job start Tue Mar 9 2021 13:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.76826 * 2 1 4 4 C 1.84432 * 109.77201 * 239.20221 * 2 1 3 5 5 C 1.55423 * 115.24452 * 324.56428 * 4 2 1 6 6 C 1.55115 * 111.37135 * 318.81871 * 5 4 2 7 7 N 1.44300 * 109.16042 * 322.22447 * 6 5 4 8 8 C 1.34775 * 123.20083 * 291.09526 * 7 6 5 9 9 O 1.21283 * 119.99835 * 180.10750 * 8 7 6 10 10 C 1.50703 * 120.00196 * 0.11066 * 8 7 6 11 11 O 1.42902 * 109.47082 * 179.97438 * 10 8 7 12 12 C 1.35898 * 116.99742 * 179.97438 * 11 10 8 13 13 C 1.38737 * 120.05834 * 359.72617 * 12 11 10 14 14 C 1.38143 * 119.94533 * 179.74309 * 13 12 11 15 15 C 1.38262 * 120.05244 * 0.51390 * 14 13 12 16 16 C 1.50707 * 119.94126 * 179.74432 * 15 14 13 17 17 O 1.42897 * 109.46961 * 245.01893 * 16 15 14 18 18 Si 1.86298 * 109.47043 * 5.01892 * 16 15 14 19 19 H 1.48498 * 109.47277 * 59.99892 * 18 16 15 20 20 H 1.48500 * 109.46923 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46998 * 299.99786 * 18 16 15 22 22 C 1.38268 * 120.11606 * 359.75830 * 15 14 13 23 23 C 1.38142 * 120.05137 * 359.97438 * 22 15 14 24 24 C 1.46960 * 113.70740 * 111.19524 * 7 6 5 25 25 C 1.45880 * 113.51698 * 260.26751 * 24 7 6 26 26 H 1.09001 * 109.46866 * 306.27754 * 1 2 3 27 27 H 1.08992 * 109.47214 * 66.28173 * 1 2 3 28 28 H 1.09006 * 109.46946 * 186.28470 * 1 2 3 29 29 H 1.08997 * 109.47361 * 180.74638 * 3 2 1 30 30 H 1.09000 * 109.47286 * 300.75228 * 3 2 1 31 31 H 1.09004 * 109.47005 * 60.74776 * 3 2 1 32 32 H 1.08992 * 108.32985 * 86.06430 * 4 2 1 33 33 H 1.09005 * 108.32782 * 203.26131 * 4 2 1 34 34 H 1.09002 * 109.09772 * 79.30439 * 5 4 2 35 35 H 1.08997 * 109.10604 * 198.39495 * 5 4 2 36 36 H 1.09007 * 109.50186 * 82.15666 * 6 5 4 37 37 H 1.08994 * 109.50337 * 202.24101 * 6 5 4 38 38 H 1.08999 * 109.46834 * 300.00156 * 10 8 7 39 39 H 1.09005 * 109.46744 * 59.99992 * 10 8 7 40 40 H 1.08006 * 120.02312 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.97078 * 180.22739 * 14 13 12 42 42 H 1.09006 * 109.46919 * 125.01486 * 16 15 14 43 43 H 0.96697 * 114.00546 * 59.99910 * 17 16 15 44 44 H 1.07991 * 119.97044 * 179.97438 * 22 15 14 45 45 H 1.08000 * 120.02376 * 179.97438 * 23 22 15 46 46 H 1.09002 * 108.65320 * 139.26885 * 24 7 6 47 47 H 1.08994 * 108.65587 * 21.27111 * 24 7 6 48 48 H 1.09004 * 110.23040 * 177.33790 * 25 24 7 49 49 H 1.08999 * 110.23744 * 299.35325 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4931 1.7532 0.0000 4 6 2.4869 -0.8886 -1.4908 5 6 1.6333 -2.1065 -1.9421 6 6 1.1536 -2.9422 -0.7265 7 7 2.2031 -2.9843 0.2629 8 6 3.3613 -3.6495 0.0825 9 8 4.2038 -3.6478 0.9549 10 6 3.6094 -4.3954 -1.2033 11 8 4.8969 -5.0135 -1.1545 12 6 5.2783 -5.7313 -2.2436 13 6 4.4284 -5.8433 -3.3345 14 6 4.8206 -6.5691 -4.4426 15 6 6.0546 -7.1925 -4.4607 16 6 6.4775 -7.9885 -5.6685 17 8 6.6057 -9.3658 -5.3102 18 14 5.1954 -7.8121 -7.0085 19 1 5.0621 -6.3807 -7.3808 20 1 5.6119 -8.5969 -8.1984 21 1 3.8899 -8.3186 -6.5143 22 6 6.9011 -7.0872 -3.3725 23 6 6.5158 -6.3580 -2.2643 24 6 1.8904 -2.2354 1.4882 25 6 2.5055 -0.9135 1.5354 26 1 -0.3633 0.6081 0.8285 27 1 -0.3633 0.4133 -0.9408 28 1 -0.3633 -1.0216 0.1125 29 1 3.5830 1.7476 -0.0134 30 1 2.1215 2.2729 -0.8831 31 1 2.1434 2.2650 0.8966 32 1 2.5361 -0.1795 -2.3170 33 1 3.4975 -1.2402 -1.2824 34 1 0.7642 -1.7481 -2.4938 35 1 2.2333 -2.7404 -2.5950 36 1 0.2646 -2.4811 -0.2961 37 1 0.9171 -3.9551 -1.0519 38 1 2.8435 -5.1600 -1.3333 39 1 3.5729 -3.6983 -2.0405 40 1 3.4625 -5.3602 -3.3189 41 1 4.1609 -6.6534 -5.2935 42 1 7.4358 -7.6166 -6.0313 43 1 5.7893 -9.7635 -4.9780 44 1 7.8642 -7.5754 -3.3890 45 1 7.1772 -6.2763 -1.4144 46 1 2.2359 -2.8115 2.3466 47 1 0.8090 -2.1196 1.5596 48 1 2.2016 -0.3885 2.4410 49 1 3.5912 -1.0011 1.4951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_2989410.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:37 Heat of formation + Delta-G solvation = -95.931342 kcal Electronic energy + Delta-G solvation = -27778.796868 eV Core-core repulsion = 24023.555628 eV Total energy + Delta-G solvation = -3755.241240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78004 -40.90634 -39.14484 -37.86072 -37.11179 -34.09104 -32.48272 -31.95648 -31.67341 -29.55180 -28.97602 -28.52873 -27.06927 -26.23277 -24.41498 -23.49430 -22.61515 -22.24996 -20.17203 -19.49223 -18.39167 -17.99432 -17.54911 -17.35033 -16.94908 -16.35935 -16.19038 -15.95434 -15.68387 -15.56250 -15.24778 -15.02807 -14.71070 -14.65210 -14.46175 -14.37005 -13.90502 -13.79742 -13.73154 -13.59097 -13.50578 -13.28825 -13.11901 -12.95238 -12.55109 -12.46598 -12.31435 -12.22118 -12.13571 -12.06818 -11.93811 -11.83128 -11.55653 -10.98575 -10.76215 -10.47791 -10.36868 -10.26823 -10.07892 -9.78637 -9.27112 0.23400 0.26748 1.20912 1.35081 1.41910 1.47850 1.54730 1.73883 1.94480 1.96709 2.02473 2.46094 2.61859 2.65530 3.33498 3.57976 3.65916 3.75286 3.85546 3.91019 3.93344 3.99542 4.08387 4.18719 4.25488 4.31118 4.39233 4.51377 4.55857 4.63481 4.69147 4.70281 4.73909 4.75905 4.82062 4.88323 4.93061 4.98168 5.00021 5.09999 5.12702 5.20907 5.25308 5.38075 5.43462 5.46497 5.51864 5.55264 5.67602 5.75654 6.21573 6.37835 6.73843 7.00233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 1.056 2.944 3 C -0.468 4.468 4 C -0.424 4.424 5 C -0.128 4.128 6 C 0.067 3.933 7 N -0.595 5.595 8 C 0.522 3.478 9 O -0.572 6.572 10 C 0.035 3.965 11 O -0.320 6.320 12 C 0.118 3.882 13 C -0.202 4.202 14 C -0.087 4.087 15 C -0.159 4.159 16 C -0.078 4.078 17 O -0.555 6.555 18 Si 0.984 3.016 19 H -0.255 1.255 20 H -0.279 1.279 21 H -0.246 1.246 22 C -0.054 4.054 23 C -0.165 4.165 24 C 0.116 3.884 25 C -0.442 4.442 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.158 0.842 41 H 0.142 0.858 42 H 0.121 0.879 43 H 0.388 0.612 44 H 0.141 0.859 45 H 0.128 0.872 46 H 0.044 0.956 47 H 0.118 0.882 48 H 0.099 0.901 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 2.016 -4.234 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.552 4.552 2 Si 1.247 2.753 3 C -0.574 4.574 4 C -0.509 4.509 5 C -0.166 4.166 6 C -0.055 4.055 7 N -0.328 5.328 8 C 0.310 3.690 9 O -0.451 6.451 10 C -0.042 4.042 11 O -0.234 6.234 12 C 0.073 3.927 13 C -0.221 4.221 14 C -0.105 4.105 15 C -0.160 4.160 16 C -0.188 4.188 17 O -0.362 6.362 18 Si 0.808 3.192 19 H -0.179 1.179 20 H -0.204 1.204 21 H -0.169 1.169 22 C -0.072 4.072 23 C -0.184 4.184 24 C -0.005 4.005 25 C -0.525 4.525 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.175 0.825 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.237 0.763 44 H 0.159 0.841 45 H 0.146 0.854 46 H 0.062 0.938 47 H 0.136 0.864 48 H 0.118 0.882 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.433 2.204 -4.420 9.773 hybrid contribution 0.541 0.095 0.797 0.968 sum -7.892 2.299 -3.623 8.983 Atomic orbital electron populations 1.26205 1.18001 1.05596 1.05406 0.78662 0.67971 0.64326 0.64318 1.26349 1.05697 1.20710 1.04677 1.26624 1.04169 1.04352 1.15778 1.22476 1.01096 0.95765 0.97281 1.22569 0.90555 1.02995 0.89394 1.47465 1.16312 1.49664 1.19359 1.20244 0.81499 0.79097 0.88161 1.90744 1.45551 1.63014 1.45760 1.22927 0.85372 0.98821 0.97093 1.86126 1.35172 1.63979 1.38103 1.19260 0.94555 0.92502 0.86417 1.21430 1.01599 1.05282 0.93765 1.21084 0.95584 0.95779 0.98053 1.20391 0.95519 1.02268 0.97826 1.25027 1.10864 0.82775 1.00169 1.86487 1.40318 1.22333 1.87062 0.85212 0.77275 0.80346 0.76393 1.17897 1.20445 1.16933 1.20959 0.99827 0.95249 0.91186 1.20667 0.95522 1.01444 1.00745 1.19930 1.01939 0.92436 0.86161 1.25722 1.04368 1.04413 1.17981 0.90852 0.90074 0.89501 0.92657 0.90891 0.91040 0.90331 0.93754 0.88034 0.91650 0.85757 0.88325 0.85992 0.86307 0.82456 0.84027 0.86156 0.76252 0.84076 0.85409 0.93751 0.86381 0.88224 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 4.50 8.44 113.37 0.96 5.46 16 2 Si 1.06 -7.07 10.45 68.60 0.72 -6.36 16 3 C -0.47 1.14 8.65 113.37 0.98 2.12 16 4 C -0.42 2.19 4.23 72.82 0.31 2.50 16 5 C -0.13 1.25 5.45 32.15 0.18 1.43 16 6 C 0.07 -0.68 5.07 87.51 0.44 -0.23 16 7 N -0.59 0.93 1.83 -834.57 -1.53 -0.59 16 8 C 0.52 3.25 7.10 87.66 0.62 3.88 16 9 O -0.57 -10.18 16.53 16.00 0.26 -9.91 16 10 C 0.04 0.03 3.96 71.24 0.28 0.31 16 11 O -0.32 -2.82 9.67 -73.37 -0.71 -3.53 16 12 C 0.12 0.64 6.69 22.51 0.15 0.80 16 13 C -0.20 0.04 9.04 22.37 0.20 0.24 16 14 C -0.09 0.07 8.66 22.25 0.19 0.26 16 15 C -0.16 -0.12 5.35 -19.85 -0.11 -0.23 16 16 C -0.08 0.10 2.80 71.24 0.20 0.30 16 17 O -0.55 -0.24 12.83 -148.98 -1.91 -2.15 16 18 Si 0.98 -2.59 25.13 68.60 1.72 -0.87 16 19 H -0.25 0.50 7.11 99.48 0.71 1.21 16 20 H -0.28 -0.42 7.11 99.48 0.71 0.28 16 21 H -0.25 0.93 7.04 99.48 0.70 1.63 16 22 C -0.05 -0.16 9.68 22.25 0.22 0.05 16 23 C -0.17 -0.98 9.99 22.36 0.22 -0.75 16 24 C 0.12 -0.16 4.79 84.11 0.40 0.24 16 25 C -0.44 0.34 5.16 69.80 0.36 0.70 16 26 H 0.07 -0.69 7.96 -2.39 -0.02 -0.71 16 27 H 0.08 -0.86 7.96 -2.39 -0.02 -0.88 16 28 H 0.09 -1.13 4.82 -2.38 -0.01 -1.15 16 29 H 0.05 0.02 7.96 -2.39 -0.02 0.00 16 30 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 32 H 0.08 -0.46 7.90 -2.39 -0.02 -0.47 16 33 H 0.04 0.01 7.40 -2.38 -0.02 0.00 16 34 H 0.10 -1.38 8.14 -2.39 -0.02 -1.40 16 35 H 0.06 -0.67 5.93 -2.39 -0.01 -0.69 16 36 H 0.12 -1.80 4.27 -2.38 -0.01 -1.81 16 37 H 0.10 -1.36 7.70 -2.39 -0.02 -1.38 16 38 H 0.12 -0.72 7.35 -2.39 -0.02 -0.74 16 39 H 0.12 -0.49 5.25 -2.38 -0.01 -0.50 16 40 H 0.16 -1.07 6.30 -2.91 -0.02 -1.09 16 41 H 0.14 -0.70 4.86 -2.91 -0.01 -0.72 16 42 H 0.12 -0.29 7.96 -2.38 -0.02 -0.31 16 43 H 0.39 -2.35 8.70 -74.06 -0.64 -2.99 16 44 H 0.14 0.14 8.06 -2.92 -0.02 0.12 16 45 H 0.13 0.80 8.06 -2.91 -0.02 0.78 16 46 H 0.04 0.19 7.91 -2.39 -0.02 0.17 16 47 H 0.12 -1.07 6.14 -2.39 -0.01 -1.08 16 48 H 0.10 -0.30 8.02 -2.39 -0.02 -0.32 16 49 H 0.05 0.32 8.02 -2.39 -0.02 0.30 16 Total: 0.00 -23.79 375.36 5.23 -18.56 By element: Atomic # 1 Polarization: -13.29 SS G_CDS: 1.06 Total: -12.23 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 5.61 Total: 17.07 kcal Atomic # 7 Polarization: 0.93 SS G_CDS: -1.53 Total: -0.59 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -2.36 Total: -15.59 kcal Atomic # 14 Polarization: -9.66 SS G_CDS: 2.44 Total: -7.22 kcal Total: -23.79 5.23 -18.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_2989410.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.370 kcal (2) G-P(sol) polarization free energy of solvation -23.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds