Wall clock time and date at job start Tue Mar 9 2021 13:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39055 * 110.99854 * 236.04434 * 2 1 3 5 5 C 1.39197 * 119.92386 * 59.73099 * 4 2 1 6 6 C 1.37631 * 120.06323 * 179.72086 * 5 4 2 7 7 C 1.39779 * 119.92919 * 0.55096 * 6 5 4 8 8 C 1.47530 * 120.06508 * 179.74755 * 7 6 5 9 9 O 1.21593 * 119.99456 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00308 * 359.97286 * 8 7 6 11 11 N 1.36595 * 120.00297 * 180.02562 * 10 8 7 12 12 C 1.46437 * 111.00156 * 247.40963 * 11 10 8 13 13 C 1.53927 * 109.46359 * 155.02974 * 12 11 10 14 14 Si 1.87576 * 106.83744 * 58.00400 * 13 12 11 15 15 C 1.86304 * 110.02993 * 196.89849 * 14 13 12 16 16 C 1.86295 * 110.11279 * 75.47432 * 14 13 12 17 17 C 1.87571 * 106.56527 * 316.16246 * 14 13 12 18 18 C 1.46441 * 111.00468 * 120.00029 * 11 10 8 19 19 C 1.39804 * 119.86722 * 359.72153 * 7 6 5 20 20 C 1.37598 * 119.92674 * 0.02562 * 19 7 6 21 21 C 1.50703 * 119.96576 * 180.02562 * 20 19 7 22 22 O 1.42895 * 109.47116 * 104.97502 * 21 20 19 23 23 Si 1.86299 * 109.46911 * 344.97681 * 21 20 19 24 24 H 1.48503 * 109.47316 * 60.00116 * 23 21 20 25 25 H 1.48498 * 109.46900 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47237 * 300.00075 * 23 21 20 27 27 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 28 28 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 29 29 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 30 30 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 31 31 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 32 32 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 33 33 H 1.07996 * 119.97290 * 359.97438 * 5 4 2 34 34 H 1.08002 * 120.03783 * 180.27026 * 6 5 4 35 35 H 0.97002 * 119.99822 * 0.02562 * 10 8 7 36 36 H 1.09008 * 109.47511 * 275.02066 * 12 11 10 37 37 H 1.08998 * 109.47700 * 35.02716 * 12 11 10 38 38 H 1.09005 * 109.97756 * 298.67334 * 13 12 11 39 39 H 1.09001 * 110.06063 * 177.37847 * 13 12 11 40 40 H 1.08999 * 109.46771 * 177.12596 * 15 14 13 41 41 H 1.08996 * 109.47140 * 297.12978 * 15 14 13 42 42 H 1.09005 * 109.46680 * 57.12657 * 15 14 13 43 43 H 1.09004 * 109.47085 * 302.82218 * 16 14 13 44 44 H 1.08999 * 109.47584 * 62.82121 * 16 14 13 45 45 H 1.09010 * 109.46979 * 182.82620 * 16 14 13 46 46 H 1.08998 * 109.97610 * 284.50852 * 17 14 13 47 47 H 1.09002 * 110.05285 * 163.21254 * 17 14 13 48 48 H 1.09004 * 109.46776 * 324.96820 * 18 11 10 49 49 H 1.09001 * 109.47009 * 84.97014 * 18 11 10 50 50 H 1.07999 * 120.04358 * 180.02562 * 19 7 6 51 51 H 1.08997 * 109.46720 * 224.98369 * 21 20 19 52 52 H 0.96709 * 113.99789 * 60.00493 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7251 -1.0768 5 6 1.6484 -0.3447 -2.3773 6 6 2.1447 -1.0568 -3.4453 7 6 2.9603 -2.1700 -3.2227 8 6 3.4893 -2.9389 -4.3653 9 8 4.1991 -3.9067 -4.1702 10 7 3.1860 -2.5686 -5.6251 11 7 3.6754 -3.2808 -6.6830 12 6 4.6389 -2.4875 -7.4490 13 6 5.6033 -3.4294 -8.1920 14 14 4.5513 -4.5307 -9.2870 15 6 5.5348 -6.0168 -9.8303 16 6 3.9610 -3.5782 -10.7752 17 6 3.0863 -5.0740 -8.2493 18 6 2.5872 -3.8281 -7.4958 19 6 3.2741 -2.5529 -1.9153 20 6 2.7791 -1.8337 -0.8518 21 6 3.1172 -2.2454 0.5579 22 8 4.0862 -1.3445 1.0977 23 14 3.8126 -3.9737 0.5502 24 1 5.0407 -4.0095 -0.2840 25 1 4.1453 -4.3795 1.9394 26 1 2.8057 -4.9099 -0.0108 27 1 -0.3634 -1.0252 0.0708 28 1 -0.3633 0.4513 -0.9233 29 1 -0.3633 0.5740 0.8525 30 1 1.5899 1.9163 0.8525 31 1 3.0829 1.3431 0.0709 32 1 1.7045 1.8723 -0.9233 33 1 1.0143 0.5126 -2.5485 34 1 1.9006 -0.7587 -4.4542 35 1 2.6201 -1.7963 -5.7807 36 1 4.1070 -1.8685 -8.1716 37 1 5.2049 -1.8491 -6.7707 38 1 6.1569 -4.0363 -7.4755 39 1 6.2959 -2.8498 -8.8023 40 1 4.9002 -6.6754 -10.4233 41 1 6.3831 -5.6909 -10.4320 42 1 5.8963 -6.5536 -8.9531 43 1 3.4080 -2.6979 -10.4473 44 1 4.8189 -3.2671 -11.3713 45 1 3.3105 -4.2122 -11.3778 46 1 3.3971 -5.8396 -7.5384 47 1 2.2962 -5.4619 -8.8922 48 1 1.7541 -4.1039 -6.8492 49 1 2.2569 -3.0772 -8.2137 50 1 3.9043 -3.4123 -1.7401 51 1 2.2158 -2.2192 1.1701 52 1 3.7913 -0.4241 1.1322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_13422196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:28:18 Heat of formation + Delta-G solvation = -21.968377 kcal Electronic energy + Delta-G solvation = -29756.998801 eV Core-core repulsion = 25881.719968 eV Total energy + Delta-G solvation = -3875.278833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.81751 -40.79910 -38.76931 -37.66898 -37.27221 -34.40758 -32.77343 -32.16395 -31.40357 -29.38251 -28.53531 -28.38695 -28.33139 -26.92775 -25.80623 -23.95881 -23.37275 -22.99515 -22.13730 -21.22223 -19.42060 -18.59980 -17.83404 -17.82118 -17.02942 -16.77898 -16.52786 -16.05675 -16.03646 -15.65277 -15.43856 -15.23632 -15.20985 -14.78290 -14.37205 -14.25979 -14.00792 -13.93986 -13.84503 -13.60862 -13.58538 -13.50985 -13.21308 -13.16363 -13.07021 -13.05911 -12.96284 -12.82277 -12.70882 -12.61037 -12.33656 -12.31069 -11.90843 -11.38961 -11.26075 -11.00181 -10.79247 -10.48349 -10.47487 -10.23933 -10.13141 -9.84850 -9.69060 -9.58343 -0.43795 0.11181 1.14829 1.41282 1.46172 1.50736 1.64917 1.78724 1.89526 1.93842 2.06466 2.59576 2.65651 2.74480 3.20937 3.48386 3.56955 3.67255 3.89888 4.02442 4.10833 4.16439 4.19707 4.25833 4.28943 4.34297 4.40918 4.45499 4.47901 4.63727 4.64835 4.65386 4.66235 4.74391 4.80246 4.80765 4.83144 4.85583 4.88513 4.97142 4.98871 5.02330 5.03873 5.09326 5.18928 5.42061 5.43246 5.49165 5.57678 5.65307 5.80822 5.90909 6.15131 6.21363 6.32131 6.68545 7.42570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.525 5.525 3 C 0.022 3.978 4 C 0.134 3.866 5 C -0.148 4.148 6 C -0.058 4.058 7 C -0.142 4.142 8 C 0.571 3.429 9 O -0.560 6.560 10 N -0.562 5.562 11 N -0.340 5.340 12 C 0.054 3.946 13 C -0.415 4.415 14 Si 1.063 2.937 15 C -0.463 4.463 16 C -0.448 4.448 17 C -0.413 4.413 18 C 0.053 3.947 19 C -0.076 4.076 20 C -0.109 4.109 21 C -0.064 4.064 22 O -0.548 6.548 23 Si 1.010 2.990 24 H -0.279 1.279 25 H -0.261 1.261 26 H -0.249 1.249 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.397 0.603 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.097 0.903 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.120 0.880 51 H 0.099 0.901 52 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.601 7.274 -3.714 10.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.246 5.246 3 C -0.124 4.124 4 C 0.039 3.961 5 C -0.168 4.168 6 C -0.077 4.077 7 C -0.146 4.146 8 C 0.360 3.640 9 O -0.437 6.437 10 N -0.307 5.307 11 N -0.159 5.159 12 C -0.073 4.073 13 C -0.500 4.500 14 Si 1.255 2.745 15 C -0.569 4.569 16 C -0.557 4.557 17 C -0.498 4.498 18 C -0.073 4.073 19 C -0.095 4.095 20 C -0.111 4.111 21 C -0.174 4.174 22 O -0.356 6.356 23 Si 0.834 3.166 24 H -0.205 1.205 25 H -0.185 1.185 26 H -0.172 1.172 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.174 0.826 34 H 0.177 0.823 35 H 0.240 0.760 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.116 0.884 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.138 0.862 51 H 0.117 0.883 52 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.059 4.654 -2.877 7.452 hybrid contribution -1.055 1.957 -1.015 2.444 sum -6.114 6.610 -3.891 9.809 Atomic orbital electron populations 1.22555 0.84123 1.03134 1.02383 1.59453 1.09972 1.15244 1.39954 1.22607 1.01142 0.86134 1.02501 1.18910 0.94073 0.93099 0.90033 1.21853 1.01476 1.01425 0.92036 1.21431 0.93475 0.91911 1.00886 1.19749 1.03545 0.99118 0.92220 1.18367 0.79695 0.83556 0.82394 1.90773 1.38441 1.29075 1.85395 1.44900 1.52428 1.31069 1.02310 1.61423 1.15305 1.32184 1.07016 1.22288 0.93592 0.95100 0.96312 1.26489 1.06250 1.08695 1.08581 0.78623 0.65189 0.65655 0.65071 1.26256 1.09430 1.15601 1.05656 1.26116 1.06410 1.08761 1.14376 1.26455 1.15729 0.99767 1.07872 1.22293 0.92016 0.97257 0.95731 1.21152 0.97357 0.99116 0.91875 1.20166 0.98802 0.96220 0.95866 1.24927 0.97585 1.03984 0.90951 1.86673 1.42052 1.22050 1.84808 0.84517 0.79319 0.73243 0.79539 1.20475 1.18531 1.17221 0.91406 0.93769 0.89300 0.89081 0.90988 0.93925 0.82637 0.82313 0.76031 0.91294 0.91628 0.91708 0.88708 0.90900 0.90992 0.92150 0.90813 0.90826 0.90695 0.91538 0.88449 0.91034 0.91218 0.86198 0.88329 0.77297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.15 9.33 127.69 1.19 1.04 16 2 N -0.52 2.05 3.70 -745.09 -2.76 -0.71 16 3 C 0.02 -0.15 9.09 127.69 1.16 1.01 16 4 C 0.13 -0.10 4.66 38.47 0.18 0.08 16 5 C -0.15 0.60 8.53 22.36 0.19 0.79 16 6 C -0.06 0.18 9.53 22.50 0.21 0.40 16 7 C -0.14 -0.68 5.88 -20.08 -0.12 -0.80 16 8 C 0.57 5.31 7.87 86.69 0.68 6.00 16 9 O -0.56 -10.88 16.66 -4.01 -0.07 -10.95 16 10 N -0.56 -1.29 4.58 -175.82 -0.81 -2.10 16 11 N -0.34 -1.19 4.00 -512.68 -2.05 -3.25 16 12 C 0.05 0.02 5.61 86.70 0.49 0.50 16 13 C -0.42 0.04 5.24 72.29 0.38 0.42 16 14 Si 1.06 -4.45 11.76 68.60 0.81 -3.64 16 15 C -0.46 0.41 8.65 113.37 0.98 1.39 16 16 C -0.45 2.50 8.65 113.37 0.98 3.48 16 17 C -0.41 0.40 5.24 72.29 0.38 0.78 16 18 C 0.05 -0.03 5.61 86.70 0.49 0.45 16 19 C -0.08 -0.59 8.19 22.50 0.18 -0.41 16 20 C -0.11 -0.44 5.28 -19.78 -0.10 -0.54 16 21 C -0.06 -0.25 2.30 71.24 0.16 -0.09 16 22 O -0.55 -2.80 12.65 -148.98 -1.89 -4.68 16 23 Si 1.01 7.21 25.74 68.60 1.77 8.98 16 24 H -0.28 -3.37 6.73 99.48 0.67 -2.70 16 25 H -0.26 -2.06 7.11 99.48 0.71 -1.35 16 26 H -0.25 -1.72 7.11 99.48 0.71 -1.02 16 27 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.04 -0.36 7.08 -2.39 -0.02 -0.37 16 29 H 0.09 -0.73 8.12 -2.38 -0.02 -0.75 16 30 H 0.09 -0.81 8.12 -2.38 -0.02 -0.83 16 31 H 0.07 -0.45 7.41 -2.39 -0.02 -0.47 16 32 H 0.04 -0.34 7.33 -2.39 -0.02 -0.36 16 33 H 0.16 -1.40 6.98 -2.91 -0.02 -1.42 16 34 H 0.16 -1.64 6.39 -2.91 -0.02 -1.65 16 35 H 0.40 -2.18 6.85 -215.50 -1.48 -3.66 16 36 H 0.07 -0.36 7.58 -2.38 -0.02 -0.38 16 37 H 0.07 0.18 8.04 -2.39 -0.02 0.16 16 38 H 0.06 0.32 7.99 -2.38 -0.02 0.30 16 39 H 0.09 -0.28 7.99 -2.39 -0.02 -0.30 16 40 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 41 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 42 H 0.06 0.09 7.96 -2.38 -0.02 0.08 16 43 H 0.07 -0.49 7.96 -2.38 -0.02 -0.51 16 44 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 45 H 0.07 -0.43 7.96 -2.38 -0.02 -0.44 16 46 H 0.07 0.25 7.99 -2.39 -0.02 0.23 16 47 H 0.10 -0.40 8.00 -2.39 -0.02 -0.42 16 48 H 0.07 0.06 8.04 -2.38 -0.02 0.04 16 49 H 0.07 -0.42 7.58 -2.39 -0.02 -0.44 16 50 H 0.12 1.42 4.46 -2.91 -0.01 1.41 16 51 H 0.10 0.07 7.78 -2.39 -0.02 0.05 16 52 H 0.38 -0.07 7.47 -74.05 -0.55 -0.63 16 Total: 0.00 -20.34 406.82 2.05 -18.29 By element: Atomic # 1 Polarization: -16.05 SS G_CDS: -0.39 Total: -16.44 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 7.44 Total: 14.50 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: -5.62 Total: -6.06 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.95 Total: -15.63 kcal Atomic # 14 Polarization: 2.76 SS G_CDS: 2.57 Total: 5.34 kcal Total: -20.34 2.05 -18.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_13422196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.679 kcal (2) G-P(sol) polarization free energy of solvation -20.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds