Wall clock time and date at job start Tue Mar 9 2021 13:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86304 * 109.46858 * 2 1 4 4 C 1.50696 * 109.47349 * 119.99891 * 2 1 3 5 5 C 1.38399 * 119.83128 * 65.00310 * 4 2 1 6 6 C 1.37884 * 120.17555 * 179.97438 * 5 4 2 7 7 C 1.39840 * 119.82651 * 0.02562 * 6 5 4 8 8 C 1.47200 * 120.16926 * 179.97438 * 7 6 5 9 9 C 1.34814 * 119.99846 * 179.97438 * 8 7 6 10 10 C 1.46432 * 119.99795 * 179.97438 * 9 8 7 11 11 O 1.21691 * 119.99976 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99652 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99846 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.85408 * 336.19822 * 13 12 10 15 15 C 1.53786 * 113.61495 * 107.50079 * 13 12 10 16 16 C 1.53787 * 87.07875 * 89.11745 * 15 13 12 17 17 O 1.42896 * 113.68841 * 270.87409 * 16 15 13 18 18 C 1.52997 * 113.61400 * 139.98328 * 16 15 13 19 19 F 1.39905 * 109.47157 * 322.50039 * 18 16 15 20 20 F 1.39900 * 109.47010 * 202.50430 * 18 16 15 21 21 F 1.39897 * 109.47422 * 82.50122 * 18 16 15 22 22 C 1.53776 * 87.07918 * 25.43343 * 16 15 13 23 23 C 1.39836 * 119.65863 * 0.24630 * 7 6 5 24 24 C 1.37895 * 119.82565 * 359.52158 * 23 7 6 25 25 H 0.96697 * 114.00604 * 60.00412 * 1 2 3 26 26 H 1.08999 * 109.47511 * 240.00492 * 2 1 3 27 27 H 1.48505 * 110.00109 * 298.67852 * 3 2 1 28 28 H 1.48499 * 110.00035 * 60.00040 * 3 2 1 29 29 H 1.08001 * 119.90939 * 359.97438 * 5 4 2 30 30 H 1.07997 * 120.08837 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.00135 * 359.97438 * 8 7 6 32 32 H 1.07997 * 119.99682 * 359.97438 * 9 8 7 33 33 H 0.96997 * 120.00113 * 359.97438 * 12 10 9 34 34 H 1.08999 * 113.61357 * 334.57326 * 15 13 12 35 35 H 1.09000 * 113.61575 * 203.66335 * 15 13 12 36 36 H 0.96702 * 114.00221 * 279.06094 * 17 16 15 37 37 H 1.08996 * 113.61714 * 89.11975 * 22 16 15 38 38 H 1.09009 * 113.61187 * 219.93185 * 22 16 15 39 39 H 1.07999 * 120.08449 * 179.74935 * 23 7 6 40 40 H 1.07997 * 119.91371 * 180.23073 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6825 -2.0618 1.3950 6 6 2.1393 -2.7190 2.5178 7 6 2.8553 -2.0162 3.4920 8 6 3.3460 -2.7101 4.6938 9 6 4.0363 -2.0293 5.6306 10 6 4.5239 -2.7195 6.8264 11 8 4.3057 -3.9074 6.9749 12 7 5.2145 -2.0390 7.7627 13 6 5.7019 -2.7293 8.9594 14 1 5.1293 -3.6268 9.1931 15 6 7.2241 -2.9481 8.9673 16 6 7.3388 -1.5740 9.6483 17 8 7.4504 -0.4854 8.7294 18 6 8.3917 -1.5256 10.7573 19 9 8.3869 -2.7365 11.4581 20 9 8.0961 -0.4775 11.6355 21 9 9.6548 -1.3186 10.1926 22 6 5.9085 -1.7988 10.1661 23 6 3.0977 -0.6496 3.3212 24 6 2.6384 -0.0076 2.1905 25 1 -0.3934 0.4416 -0.7650 26 1 1.7923 -0.5137 -0.8900 27 1 1.5878 2.4586 -1.2243 28 1 1.5613 2.4679 1.2085 29 1 1.1291 -2.6031 0.6419 30 1 1.9440 -3.7735 2.6449 31 1 3.1530 -3.7646 4.8252 32 1 4.2295 -0.9749 5.4989 33 1 5.3887 -1.0922 7.6441 34 1 7.6658 -2.9800 7.9714 35 1 7.5428 -3.7767 9.5997 36 1 8.3433 -0.3536 8.3822 37 1 5.8675 -2.3132 11.1262 38 1 5.2885 -0.9026 10.1394 39 1 3.6463 -0.0993 4.0712 40 1 2.8281 1.0470 2.0554 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_17047570_12360594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:35:29 Heat of formation + Delta-G solvation = -188.039185 kcal Electronic energy + Delta-G solvation = -28980.786750 eV Core-core repulsion = 24120.707688 eV Total energy + Delta-G solvation = -4860.079062 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.107 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.23348 -48.77883 -48.71378 -41.59333 -40.60422 -39.85413 -37.87278 -36.43878 -35.15630 -34.10008 -32.20580 -31.32668 -28.87496 -27.17467 -27.13127 -24.71554 -23.99651 -23.42560 -22.05737 -20.98612 -20.56068 -19.89953 -19.51978 -19.40642 -18.64267 -18.54967 -17.43875 -17.21801 -17.02398 -16.59696 -16.20747 -16.09556 -15.89070 -15.57775 -15.47738 -15.35391 -15.15802 -15.09952 -14.93683 -14.89357 -14.78896 -14.61959 -14.33908 -14.04631 -13.89742 -13.84513 -13.70319 -13.54180 -13.00778 -12.91535 -12.62386 -12.30117 -12.04765 -11.90157 -11.71902 -11.31464 -11.22098 -11.10029 -10.49550 -10.18994 -9.97228 -9.23639 -4.92839 -0.54731 0.40447 0.88118 1.29570 1.52428 1.60167 1.94405 2.04245 2.19853 2.44880 2.59101 2.67180 2.78069 2.87126 3.37684 3.41108 3.47732 3.55073 3.62245 3.76387 3.85335 3.95011 4.15867 4.22606 4.26507 4.32970 4.39945 4.47515 4.49979 4.56532 4.68824 4.74489 4.78623 4.85041 4.97988 5.10592 5.16756 5.38952 5.47555 5.49525 5.60801 5.90313 6.27492 6.54271 6.56520 7.19563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.091 4.091 3 Si 0.767 3.233 4 C -0.075 4.075 5 C -0.108 4.108 6 C -0.102 4.102 7 C -0.082 4.082 8 C -0.017 4.017 9 C -0.210 4.210 10 C 0.547 3.453 11 O -0.588 6.588 12 N -0.692 5.692 13 C 0.128 3.872 14 H 0.106 0.894 15 C -0.165 4.165 16 C 0.072 3.928 17 O -0.515 6.515 18 C 0.432 3.568 19 F -0.178 7.178 20 F -0.185 7.185 21 F -0.186 7.186 22 C -0.121 4.121 23 C -0.095 4.095 24 C -0.126 4.126 25 H 0.395 0.605 26 H 0.095 0.905 27 H -0.289 1.289 28 H -0.295 1.295 29 H 0.131 0.869 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.161 0.839 33 H 0.420 0.580 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.406 0.594 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.158 0.842 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 3.253 -3.226 5.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.199 4.199 3 Si 0.672 3.328 4 C -0.075 4.075 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.082 4.082 8 C -0.037 4.037 9 C -0.230 4.230 10 C 0.338 3.662 11 O -0.470 6.470 12 N -0.343 5.343 13 C 0.021 3.979 14 H 0.124 0.876 15 C -0.204 4.204 16 C 0.028 3.972 17 O -0.325 6.325 18 C 0.377 3.623 19 F -0.160 7.160 20 F -0.166 7.166 21 F -0.168 7.168 22 C -0.158 4.158 23 C -0.112 4.112 24 C -0.143 4.143 25 H 0.245 0.755 26 H 0.113 0.887 27 H -0.217 1.217 28 H -0.223 1.223 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.143 0.857 32 H 0.179 0.821 33 H 0.258 0.742 34 H 0.114 0.886 35 H 0.137 0.863 36 H 0.259 0.741 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.175 0.825 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.742 3.029 -2.419 4.250 hybrid contribution -0.235 0.135 -0.403 0.485 sum 1.508 3.164 -2.822 4.500 Atomic orbital electron populations 1.86545 1.18540 1.80740 1.51074 1.25090 0.84082 1.12095 0.98651 0.94118 0.90256 0.72024 0.76398 1.19686 0.97861 0.94315 0.95623 1.21106 0.99131 0.94187 0.98215 1.21629 0.96345 1.00816 0.93185 1.19119 1.00183 0.94159 0.94729 1.22360 0.91092 0.99633 0.90618 1.22976 1.03731 1.02089 0.94206 1.18707 0.77278 0.86287 0.83973 1.90818 1.59567 1.17276 1.79317 1.45487 1.54965 1.14017 1.19871 1.21580 0.94429 0.96712 0.85136 0.87602 1.24234 0.97558 0.95355 1.03227 1.23585 0.94450 0.91008 0.88194 1.86503 1.37390 1.48854 1.59723 1.21525 0.82745 0.73538 0.84483 1.93187 1.96523 1.45439 1.80828 1.93209 1.93097 1.58536 1.71756 1.93179 1.44260 1.94716 1.84640 1.23576 0.91075 1.01751 0.99434 1.21635 0.98589 0.93328 0.97684 1.21167 0.98966 1.00360 0.93835 0.75452 0.88683 1.21654 1.22282 0.85068 0.84218 0.85657 0.82149 0.74181 0.88650 0.86254 0.74128 0.85057 0.87502 0.82486 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.94 12.81 -148.98 -1.91 -2.85 16 2 C -0.09 0.14 2.79 71.23 0.20 0.33 16 3 Si 0.77 -2.51 29.84 68.60 2.05 -0.47 16 4 C -0.07 -0.08 5.39 -19.79 -0.11 -0.19 16 5 C -0.11 -0.19 9.66 22.22 0.21 0.02 16 6 C -0.10 -0.11 9.80 22.57 0.22 0.11 16 7 C -0.08 -0.04 5.87 -20.15 -0.12 -0.15 16 8 C -0.02 -0.01 9.46 23.84 0.23 0.21 16 9 C -0.21 0.30 9.41 23.62 0.22 0.52 16 10 C 0.55 1.71 7.74 86.38 0.67 2.38 16 11 O -0.59 -6.94 15.83 -4.32 -0.07 -7.01 16 12 N -0.69 1.70 5.15 -444.26 -2.29 -0.58 16 13 C 0.13 -0.34 4.32 45.52 0.20 -0.14 16 14 H 0.11 0.06 7.46 -2.39 -0.02 0.04 16 15 C -0.16 0.73 7.15 31.12 0.22 0.96 16 16 C 0.07 -0.35 1.35 -10.27 -0.01 -0.37 16 17 O -0.52 3.54 12.14 -148.98 -1.81 1.73 16 18 C 0.43 -0.52 2.85 71.98 0.21 -0.31 16 19 F -0.18 -0.04 15.75 44.97 0.71 0.67 16 20 F -0.18 -0.36 17.18 44.97 0.77 0.41 16 21 F -0.19 0.02 16.67 44.97 0.75 0.77 16 22 C -0.12 0.68 7.01 31.12 0.22 0.90 16 23 C -0.09 0.20 9.41 22.58 0.21 0.41 16 24 C -0.13 0.13 8.65 22.23 0.19 0.32 16 25 H 0.40 -2.47 8.74 -74.06 -0.65 -3.11 16 26 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 27 H -0.29 -0.37 7.11 99.48 0.71 0.33 16 28 H -0.30 -1.02 7.04 99.48 0.70 -0.32 16 29 H 0.13 0.03 8.06 -2.91 -0.02 0.01 16 30 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 31 H 0.13 0.38 7.52 -2.91 -0.02 0.36 16 32 H 0.16 -1.30 6.07 -2.91 -0.02 -1.32 16 33 H 0.42 -2.74 7.57 -92.71 -0.70 -3.45 16 34 H 0.09 -0.40 8.14 -2.39 -0.02 -0.41 16 35 H 0.12 -0.60 7.13 -2.39 -0.02 -0.62 16 36 H 0.41 -4.85 8.46 -74.06 -0.63 -5.48 16 37 H 0.13 -0.99 7.88 -2.39 -0.02 -1.01 16 38 H 0.11 -0.67 8.14 -2.38 -0.02 -0.69 16 39 H 0.16 -1.25 6.17 -2.91 -0.02 -1.27 16 40 H 0.14 -0.68 4.84 -2.91 -0.01 -0.69 16 Total: 0.00 -20.89 352.59 0.17 -20.72 By element: Atomic # 1 Polarization: -17.59 SS G_CDS: -0.80 Total: -18.39 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 2.76 Total: 5.00 kcal Atomic # 7 Polarization: 1.70 SS G_CDS: -2.29 Total: -0.58 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -3.78 Total: -8.13 kcal Atomic # 9 Polarization: -0.37 SS G_CDS: 2.23 Total: 1.86 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.05 Total: -0.47 kcal Total: -20.89 0.17 -20.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_17047570_12360594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.319 kcal (2) G-P(sol) polarization free energy of solvation -20.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds