Wall clock time and date at job start Tue Mar 9 2021 13:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86293 * 109.47227 * 2 1 4 4 C 1.50697 * 109.46745 * 240.00175 * 2 1 3 5 5 C 1.31120 * 118.54866 * 120.01762 * 4 2 1 6 6 N 1.38966 * 121.87515 * 179.63948 * 5 4 2 7 7 C 1.47030 * 118.85595 * 13.18206 * 6 5 4 8 8 C 1.50698 * 109.81896 * 196.87519 * 7 6 5 9 9 O 1.21273 * 120.00236 * 19.14189 * 8 7 6 10 10 N 1.34780 * 119.99837 * 199.13281 * 8 7 6 11 11 C 1.47795 * 134.67622 * 359.96181 * 10 8 7 12 12 C 1.54133 * 86.35734 * 203.85730 * 11 10 8 13 13 C 1.46523 * 134.67928 * 179.97438 * 10 8 7 14 14 C 1.52793 * 121.36929 * 30.53889 * 13 10 8 15 15 C 1.53980 * 86.74282 * 258.63966 * 14 13 10 16 16 C 1.53003 * 113.57463 * 220.67141 * 15 14 13 17 17 F 1.39901 * 109.47052 * 298.58464 * 16 15 14 18 18 C 1.53043 * 121.37010 * 281.40840 * 13 10 8 19 19 C 1.53538 * 107.70893 * 316.44715 * 7 6 5 20 20 C 1.50208 * 118.55013 * 300.00268 * 4 2 1 21 21 H 0.96703 * 113.99414 * 299.99533 * 1 2 3 22 22 H 1.09001 * 109.47074 * 120.00797 * 2 1 3 23 23 H 1.48502 * 110.00386 * 300.00627 * 3 2 1 24 24 H 1.48507 * 109.99932 * 61.32253 * 3 2 1 25 25 H 1.08006 * 119.07022 * 359.59969 * 5 4 2 26 26 H 0.96998 * 120.58126 * 193.29100 * 6 5 4 27 27 H 1.09000 * 109.81705 * 76.02012 * 7 6 5 28 28 H 1.08998 * 113.72909 * 89.49650 * 11 10 8 29 29 H 1.08996 * 113.82579 * 318.23112 * 11 10 8 30 30 H 1.09000 * 113.80559 * 222.91981 * 12 11 10 31 31 H 1.09003 * 113.91207 * 91.43169 * 12 11 10 32 32 H 1.08998 * 113.66557 * 144.18187 * 14 13 10 33 33 H 1.08994 * 113.67165 * 13.09488 * 14 13 10 34 34 H 1.09002 * 113.57689 * 89.96689 * 15 14 13 35 35 H 1.08995 * 109.46994 * 58.58786 * 16 15 14 36 36 H 1.09003 * 109.47041 * 178.58886 * 16 15 14 37 37 H 1.08999 * 113.74380 * 346.91608 * 18 13 10 38 38 H 1.09003 * 113.66576 * 215.78053 * 18 13 10 39 39 H 1.09007 * 109.61810 * 180.64135 * 19 7 6 40 40 H 1.08997 * 109.62813 * 301.01028 * 19 7 6 41 41 H 1.08995 * 109.33132 * 79.81501 * 20 4 2 42 42 H 1.09003 * 109.32515 * 320.32670 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 2.6833 -0.0461 -2.0745 6 7 3.1898 -0.6350 -3.2268 7 6 2.6460 -1.9308 -3.6593 8 6 3.5829 -2.5731 -4.6495 9 8 4.7383 -2.2105 -4.7145 10 7 3.1367 -3.5508 -5.4629 11 6 1.8376 -4.2280 -5.6582 12 6 2.6494 -5.4068 -6.2302 13 6 3.7425 -4.3744 -6.5125 14 6 5.2221 -4.7532 -6.4715 15 6 5.4455 -3.6410 -7.5127 16 6 6.4389 -4.0224 -8.6120 17 9 7.6895 -4.2815 -8.0410 18 6 3.9728 -3.8254 -7.9224 19 6 2.5137 -2.8204 -2.4149 20 6 1.5484 -2.1483 -1.4358 21 1 -0.3932 0.4417 0.7651 22 1 1.7923 -0.5140 0.8899 23 1 1.5614 2.4680 -1.2084 24 1 1.5880 2.4585 1.2243 25 1 2.9154 0.9885 -1.8686 26 1 3.8910 -0.1996 -3.7362 27 1 1.6671 -1.7867 -4.1165 28 1 1.1951 -3.7411 -6.3918 29 1 1.3192 -4.4626 -4.7286 30 1 2.2155 -5.8448 -7.1290 31 1 2.9299 -6.1524 -5.4861 32 1 5.4280 -5.7545 -6.8499 33 1 5.6981 -4.5554 -5.5112 34 1 5.6565 -2.6668 -7.0715 35 1 6.0839 -4.9137 -9.1293 36 1 6.5273 -3.2007 -9.3229 37 1 3.4525 -2.8880 -8.1189 38 1 3.8269 -4.5655 -8.7093 39 1 2.1225 -3.7964 -2.7027 40 1 3.4901 -2.9414 -1.9458 41 1 0.5357 -2.1985 -1.8357 42 1 1.5825 -2.6707 -0.4797 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_17321334_15413834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:46:06 Heat of formation + Delta-G solvation = -28.846741 kcal Electronic energy + Delta-G solvation = -24894.896786 eV Core-core repulsion = 21179.262101 eV Total energy + Delta-G solvation = -3715.634684 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.58466 -42.24583 -40.58154 -38.97642 -37.48609 -37.03097 -33.34791 -33.27851 -30.84611 -29.14778 -27.40033 -26.87658 -25.39230 -24.62041 -23.79354 -22.50443 -21.39727 -19.47469 -19.06021 -18.49333 -18.41576 -17.63859 -17.23901 -17.11350 -16.88848 -16.47982 -16.19582 -16.11661 -15.51241 -15.40656 -15.03526 -14.74578 -14.55990 -14.29434 -14.09553 -13.85574 -13.68071 -13.56942 -13.46658 -13.32906 -12.93145 -12.75946 -12.52445 -12.38347 -12.10093 -11.81979 -11.75756 -11.73401 -11.54059 -11.32249 -10.94912 -10.74181 -10.30723 -9.77096 -8.50327 -4.93085 1.23642 1.32962 1.43353 1.55900 1.60236 1.93626 2.50060 3.13206 3.33640 3.38133 3.47205 3.55614 3.59946 3.67852 3.75621 3.88269 3.97825 4.07442 4.11512 4.16977 4.18364 4.27230 4.37196 4.43519 4.56035 4.59097 4.62461 4.66061 4.70033 4.74248 4.75634 4.88887 4.95875 4.97166 5.01000 5.04716 5.18195 5.25825 5.28984 5.36896 5.52805 6.23781 6.59217 6.67781 6.75358 6.98061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.056 4.056 3 Si 0.737 3.263 4 C -0.248 4.248 5 C 0.136 3.864 6 N -0.738 5.738 7 C 0.145 3.855 8 C 0.529 3.471 9 O -0.570 6.570 10 N -0.625 5.625 11 C 0.097 3.903 12 C -0.123 4.123 13 C 0.131 3.869 14 C -0.129 4.129 15 C -0.148 4.148 16 C 0.066 3.934 17 F -0.240 7.240 18 C -0.108 4.108 19 C -0.117 4.117 20 C -0.048 4.048 21 H 0.388 0.612 22 H 0.081 0.919 23 H -0.302 1.302 24 H -0.291 1.291 25 H 0.142 0.858 26 H 0.407 0.593 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 -4.415 -2.395 6.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.166 4.166 3 Si 0.644 3.356 4 C -0.258 4.258 5 C 0.016 3.984 6 N -0.371 5.371 7 C 0.036 3.964 8 C 0.318 3.682 9 O -0.449 6.449 10 N -0.359 5.359 11 C -0.024 4.024 12 C -0.161 4.161 13 C 0.046 3.954 14 C -0.167 4.167 15 C -0.167 4.167 16 C 0.012 3.988 17 F -0.222 7.222 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.085 4.085 21 H 0.237 0.763 22 H 0.099 0.901 23 H -0.230 1.230 24 H -0.218 1.218 25 H 0.159 0.841 26 H 0.243 0.757 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.102 -3.660 -2.848 6.191 hybrid contribution -0.449 0.735 0.644 1.075 sum -4.551 -2.925 -2.204 5.842 Atomic orbital electron populations 1.86553 1.19411 1.80336 1.50581 1.24682 0.83302 1.09738 0.98918 0.94650 0.91029 0.73814 0.76086 1.20169 1.09925 0.97046 0.98639 1.20423 0.95882 0.95942 0.86134 1.44358 1.44019 1.21162 1.27517 1.20960 0.95677 0.85359 0.94411 1.20590 0.88104 0.78139 0.81350 1.90707 1.20152 1.62886 1.71155 1.50012 1.15319 1.35623 1.34982 1.23604 0.85971 0.90162 1.02660 1.23345 0.93687 0.95468 1.03598 1.22566 0.94677 0.89131 0.89040 1.22991 0.95285 0.99605 0.98799 1.23105 0.96654 0.99642 0.97250 1.22237 0.78005 1.03715 0.94881 1.92729 1.45970 1.95962 1.87520 1.23130 0.92893 1.02867 0.95773 1.21801 1.00862 0.98591 0.94316 1.19903 0.97904 0.91550 0.99170 0.76289 0.90080 1.22990 1.21837 0.84113 0.75679 0.88526 0.87526 0.88002 0.86385 0.88234 0.86728 0.93694 0.91294 0.87710 0.89829 0.90843 0.84754 0.88568 0.92034 0.91638 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.08 12.76 -148.98 -1.90 -3.98 16 2 C -0.06 -0.09 2.82 71.23 0.20 0.11 16 3 Si 0.74 0.48 29.68 68.60 2.04 2.52 16 4 C -0.25 -0.84 5.48 -16.76 -0.09 -0.94 16 5 C 0.14 0.44 9.63 83.40 0.80 1.24 16 6 N -0.74 -3.00 5.47 -328.96 -1.80 -4.80 16 7 C 0.14 0.29 3.12 44.32 0.14 0.43 16 8 C 0.53 2.78 7.31 87.66 0.64 3.42 16 9 O -0.57 -7.68 15.61 -3.01 -0.05 -7.73 16 10 N -0.63 0.46 3.61 -788.05 -2.85 -2.39 16 11 C 0.10 -0.87 8.62 86.40 0.74 -0.12 16 12 C -0.12 1.21 8.06 30.98 0.25 1.45 16 13 C 0.13 -0.40 1.57 3.41 0.01 -0.40 16 14 C -0.13 -0.19 7.06 30.86 0.22 0.03 16 15 C -0.15 -0.24 4.12 -10.14 -0.04 -0.28 16 16 C 0.07 -0.02 7.37 71.98 0.53 0.51 16 17 F -0.24 -2.05 17.24 44.97 0.78 -1.27 16 18 C -0.11 0.55 7.55 30.94 0.23 0.78 16 19 C -0.12 -0.04 5.47 30.79 0.17 0.13 16 20 C -0.05 -0.07 5.75 29.71 0.17 0.10 16 21 H 0.39 -1.44 8.74 -74.06 -0.65 -2.08 16 22 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 23 H -0.30 -2.36 7.11 99.48 0.71 -1.65 16 24 H -0.29 -1.47 7.11 99.48 0.71 -0.76 16 25 H 0.14 0.04 4.37 -2.91 -0.01 0.03 16 26 H 0.41 1.91 8.10 -92.71 -0.75 1.16 16 27 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 29 H 0.10 -1.17 7.68 -2.39 -0.02 -1.19 16 30 H 0.12 -1.69 8.14 -2.39 -0.02 -1.71 16 31 H 0.10 -0.94 8.14 -2.39 -0.02 -0.95 16 32 H 0.11 -0.29 8.10 -2.39 -0.02 -0.31 16 33 H 0.04 0.41 7.90 -2.39 -0.02 0.39 16 34 H 0.07 0.63 7.51 -2.39 -0.02 0.62 16 35 H 0.10 -0.66 7.98 -2.39 -0.02 -0.68 16 36 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.13 -1.50 7.99 -2.39 -0.02 -1.52 16 39 H 0.10 -0.37 7.69 -2.38 -0.02 -0.39 16 40 H 0.06 0.24 8.14 -2.39 -0.02 0.23 16 41 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 Total: 0.00 -21.68 339.79 -0.13 -21.82 By element: Atomic # 1 Polarization: -10.31 SS G_CDS: -0.32 Total: -10.63 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 3.97 Total: 6.47 kcal Atomic # 7 Polarization: -2.54 SS G_CDS: -4.65 Total: -7.18 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.95 Total: -11.71 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.78 Total: -1.27 kcal Atomic # 14 Polarization: 0.48 SS G_CDS: 2.04 Total: 2.52 kcal Total: -21.68 -0.13 -21.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_17321334_15413834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.031 kcal (2) G-P(sol) polarization free energy of solvation -21.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds