Wall clock time and date at job start Tue Mar 9 2021 12:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81406 * 102.99666 * 2 1 4 4 H 1.09000 * 112.84906 * 43.80032 * 3 2 1 5 5 C 1.53780 * 113.61268 * 174.99819 * 3 2 1 6 6 C 1.53787 * 87.08091 * 140.06142 * 5 3 2 7 7 H 1.09002 * 113.61122 * 89.19824 * 6 5 3 8 8 C 1.52996 * 113.61637 * 220.01549 * 6 5 3 9 9 N 1.46496 * 109.47038 * 185.00071 * 8 6 5 10 10 C 1.34778 * 119.99865 * 180.02562 * 9 8 6 11 11 O 1.21571 * 119.99901 * 359.97438 * 10 9 8 12 12 C 1.47710 * 119.99944 * 180.02562 * 10 9 8 13 13 N 1.31811 * 126.52146 * 359.97151 * 12 10 9 14 14 N 1.28465 * 110.07556 * 180.02562 * 13 12 10 15 15 C 1.46499 * 124.88399 * 179.97438 * 14 13 12 16 16 C 1.35034 * 110.22852 * 0.22725 * 14 13 12 17 17 C 1.50703 * 126.38041 * 179.75781 * 16 14 13 18 18 O 1.42899 * 109.47543 * 329.99882 * 17 16 14 19 19 Si 1.86303 * 109.46896 * 209.99944 * 17 16 14 20 20 C 1.35368 * 107.23277 * 359.63286 * 16 14 13 21 21 C 1.53779 * 87.08132 * 334.56682 * 6 5 3 22 22 H 1.09006 * 109.47320 * 60.00455 * 1 2 3 23 23 H 1.08997 * 109.47142 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47692 * 300.00437 * 1 2 3 25 25 H 1.08996 * 113.61369 * 25.51795 * 5 3 2 26 26 H 1.08998 * 113.61469 * 254.60903 * 5 3 2 27 27 H 1.09000 * 109.47011 * 65.00253 * 8 6 5 28 28 H 1.08997 * 109.47240 * 305.00373 * 8 6 5 29 29 H 0.96997 * 120.00665 * 0.02562 * 9 8 6 30 30 H 1.09002 * 109.47391 * 90.01884 * 15 14 13 31 31 H 1.09001 * 109.46813 * 330.01941 * 15 14 13 32 32 H 1.09004 * 109.47041 * 210.02068 * 15 14 13 33 33 H 1.09001 * 109.47189 * 90.00465 * 17 16 14 34 34 H 0.96703 * 113.99773 * 300.00203 * 18 17 16 35 35 H 1.48496 * 110.00147 * 180.02562 * 19 17 16 36 36 H 1.48506 * 109.99779 * 301.32068 * 19 17 16 37 37 H 1.07991 * 127.24749 * 180.16245 * 20 16 14 38 38 H 1.08997 * 113.61355 * 139.97780 * 21 6 5 39 39 H 1.08999 * 113.61473 * 270.88348 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.6108 2.3430 0.6952 5 6 3.7282 2.0521 0.1229 6 6 3.5201 3.1753 -0.9068 7 1 3.2652 4.1360 -0.4593 8 6 4.6471 3.2798 -1.9361 9 7 4.4190 4.4456 -2.7934 10 6 5.2900 4.7377 -3.7795 11 8 6.2653 4.0339 -3.9573 12 6 5.0603 5.9135 -4.6435 13 7 4.0525 6.7594 -4.5655 14 7 4.1647 7.6638 -5.4709 15 6 3.2209 8.7653 -5.6764 16 6 5.2748 7.4500 -6.2093 17 6 5.7524 8.2867 -7.3682 18 8 4.6285 8.8740 -8.0269 19 14 6.6833 7.2095 -8.5698 20 6 5.8802 6.3457 -5.7129 21 6 2.3003 2.3836 -1.4069 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 4.3571 1.2389 -0.2394 26 1 4.0257 2.4122 1.1077 27 1 4.6657 2.3774 -2.5473 28 1 5.6012 3.3890 -1.4205 29 1 3.6411 5.0074 -2.6514 30 1 3.5271 9.6228 -5.0771 31 1 2.2224 8.4492 -5.3747 32 1 3.2111 9.0435 -6.7303 33 1 6.4106 9.0741 -7.0009 34 1 3.9991 8.2303 -8.3800 35 1 7.1602 8.0228 -9.7170 36 1 7.8364 6.5677 -7.8886 37 1 6.7944 5.8888 -6.0616 38 1 1.4450 3.0113 -1.6569 39 1 2.5389 1.6610 -2.1873 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_18360570_13259642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:22 Heat of formation + Delta-G solvation = 43.437089 kcal Electronic energy + Delta-G solvation = -21477.640069 eV Core-core repulsion = 18130.094018 eV Total energy + Delta-G solvation = -3347.546052 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.86767 -40.81791 -39.66563 -38.10979 -35.61766 -34.39294 -32.67690 -30.10024 -29.66683 -28.23919 -26.76186 -26.66913 -24.78203 -23.36143 -22.25463 -21.26603 -20.38204 -19.16914 -17.78372 -17.56856 -17.52503 -17.02397 -16.85018 -16.57831 -16.20631 -15.84706 -15.73980 -15.24718 -15.10766 -14.86499 -14.79889 -14.24385 -14.04586 -14.00310 -13.60146 -13.50479 -13.46302 -13.42837 -12.81473 -12.59981 -12.34853 -11.94875 -11.87677 -11.81482 -11.36683 -11.29048 -10.86542 -10.78766 -10.36567 -10.03408 -9.98410 -8.70723 -4.97259 0.41553 0.77850 0.78339 1.18204 1.54722 1.64382 1.70819 1.97189 2.10272 2.26633 3.12172 3.30162 3.31714 3.41219 3.46512 3.63780 3.78163 4.02298 4.16699 4.30670 4.31400 4.31934 4.33491 4.34429 4.38766 4.50493 4.58978 4.61919 4.74684 4.75758 4.79697 4.81579 4.86148 4.96353 5.03258 5.18849 5.27647 5.43648 5.66444 6.34877 6.52663 6.80056 7.08548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.317 6.317 3 C -0.072 4.072 4 H 0.118 0.882 5 C -0.102 4.102 6 C -0.106 4.106 7 H 0.119 0.881 8 C 0.131 3.869 9 N -0.703 5.703 10 C 0.601 3.399 11 O -0.572 6.572 12 C -0.037 4.037 13 N -0.260 5.260 14 N -0.258 5.258 15 C 0.062 3.938 16 C -0.006 4.006 17 C -0.034 4.034 18 O -0.541 6.541 19 Si 0.790 3.210 20 C -0.199 4.199 21 C -0.118 4.118 22 H 0.085 0.915 23 H 0.103 0.897 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.416 0.584 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.400 0.600 35 H -0.280 1.280 36 H -0.292 1.292 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 4.559 -1.682 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.088 6.088 3 C -0.200 4.200 4 H 0.136 0.864 5 C -0.141 4.141 6 C -0.126 4.126 7 H 0.137 0.863 8 C 0.008 3.992 9 N -0.354 5.354 10 C 0.386 3.614 11 O -0.450 6.450 12 C -0.195 4.195 13 N -0.098 5.098 14 N -0.047 5.047 15 C -0.076 4.076 16 C -0.132 4.132 17 C -0.145 4.145 18 O -0.349 6.349 19 Si 0.693 3.307 20 C -0.227 4.227 21 C -0.158 4.158 22 H 0.104 0.896 23 H 0.121 0.879 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.253 0.747 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.156 0.844 33 H 0.145 0.855 34 H 0.251 0.749 35 H -0.207 1.207 36 H -0.219 1.219 37 H 0.177 0.823 38 H 0.105 0.895 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.708 3.850 -1.404 7.027 hybrid contribution -0.242 1.184 0.435 1.284 sum -5.950 5.034 -0.969 7.854 Atomic orbital electron populations 1.23371 0.91731 1.07048 1.05718 1.87202 1.10421 1.13422 1.97780 1.24724 1.01233 0.92204 1.01871 0.86401 1.22783 0.93122 0.97743 1.00440 1.22674 0.94607 0.99536 0.95764 0.86306 1.21421 0.98831 0.87592 0.91357 1.45739 1.27268 1.30186 1.32212 1.17083 0.82227 0.82391 0.79723 1.90794 1.30727 1.51647 1.71824 1.21725 0.96718 0.99168 1.01917 1.73461 1.23195 1.00802 1.12337 1.45741 1.18866 1.20277 1.19800 1.22975 0.91849 0.85111 1.07668 1.22082 0.91741 0.99449 0.99923 1.24809 0.94482 1.01575 0.93641 1.86448 1.35502 1.38030 1.74900 0.93163 0.80589 0.80307 0.76601 1.21625 1.03252 0.98302 0.99494 1.23356 0.98641 0.98857 0.94944 0.89647 0.87878 0.89619 0.89706 0.88980 0.91811 0.91578 0.74683 0.89310 0.87522 0.84389 0.85504 0.74857 1.20665 1.21937 0.82309 0.89527 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.24 10.76 113.37 1.22 1.46 16 2 S -0.32 -0.98 22.18 -56.49 -1.25 -2.23 16 3 C -0.07 0.16 4.27 31.12 0.13 0.29 16 4 H 0.12 -0.53 8.14 -2.39 -0.02 -0.55 16 5 C -0.10 0.26 7.23 31.12 0.23 0.49 16 6 C -0.11 0.45 3.75 -10.27 -0.04 0.41 16 7 H 0.12 -0.85 8.14 -2.39 -0.02 -0.87 16 8 C 0.13 0.14 5.51 86.38 0.48 0.62 16 9 N -0.70 -1.90 5.55 -466.12 -2.59 -4.48 16 10 C 0.60 5.79 7.82 86.75 0.68 6.47 16 11 O -0.57 -9.74 16.93 -3.94 -0.07 -9.81 16 12 C -0.04 -0.28 7.13 42.46 0.30 0.03 16 13 N -0.26 -0.99 11.67 -48.17 -0.56 -1.55 16 14 N -0.26 0.11 3.70 -355.91 -1.32 -1.20 16 15 C 0.06 -0.50 11.01 127.77 1.41 0.90 16 16 C -0.01 0.00 6.18 41.40 0.26 0.26 16 17 C -0.03 0.16 2.99 71.24 0.21 0.37 16 18 O -0.54 4.34 10.02 -148.98 -1.49 2.85 16 19 Si 0.79 -3.00 31.37 68.60 2.15 -0.85 16 20 C -0.20 -1.09 9.35 22.41 0.21 -0.88 16 21 C -0.12 0.41 7.22 31.12 0.22 0.64 16 22 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 23 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 24 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H 0.08 0.01 8.06 -2.39 -0.02 -0.01 16 26 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.06 0.24 7.84 -2.39 -0.02 0.22 16 28 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.42 -0.57 8.20 -92.71 -0.76 -1.33 16 30 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 32 H 0.14 -1.61 5.00 -2.38 -0.01 -1.62 16 33 H 0.13 -0.57 7.96 -2.39 -0.02 -0.59 16 34 H 0.40 -6.20 8.39 -74.06 -0.62 -6.82 16 35 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 36 H -0.29 -1.02 6.83 99.48 0.68 -0.34 16 37 H 0.16 0.97 6.84 -2.92 -0.02 0.95 16 38 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H 0.09 -0.03 7.86 -2.39 -0.02 -0.05 16 Total: 0.00 -20.51 340.16 -0.12 -20.62 By element: Atomic # 1 Polarization: -14.09 SS G_CDS: -0.30 Total: -14.39 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.31 Total: 11.05 kcal Atomic # 7 Polarization: -2.77 SS G_CDS: -4.47 Total: -7.24 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -1.56 Total: -6.96 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.15 Total: -0.85 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -1.25 Total: -2.23 kcal Total: -20.51 -0.12 -20.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_18360570_13259642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.061 kcal (2) G-P(sol) polarization free energy of solvation -20.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds