Wall clock time and date at job start Tue Mar 9 2021 12:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28468 * 124.88473 * 2 1 4 4 C 1.31806 * 110.07239 * 179.88347 * 3 2 1 5 5 C 1.47712 * 126.51832 * 180.12896 * 4 3 2 6 6 O 1.21569 * 120.00462 * 180.28173 * 5 4 3 7 7 N 1.34777 * 119.99840 * 0.27934 * 5 4 3 8 8 C 1.46504 * 119.99673 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47175 * 35.00538 * 8 7 5 10 10 C 1.52999 * 109.46733 * 155.00591 * 8 7 5 11 11 C 1.53002 * 109.46997 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47031 * 299.99415 * 11 10 8 13 13 H 1.08997 * 109.47449 * 300.00202 * 12 11 10 14 14 C 1.53002 * 109.47031 * 180.02562 * 12 11 10 15 15 O 1.42896 * 109.46951 * 175.00122 * 14 12 11 16 16 C 1.52999 * 109.46752 * 60.00435 * 12 11 10 17 17 C 1.53002 * 109.46997 * 299.99585 * 16 12 11 18 18 C 1.41505 * 106.96581 * 0.36293 * 4 3 2 19 19 C 1.35037 * 124.88768 * 180.29460 * 2 1 3 20 20 C 1.50702 * 126.38193 * 359.97438 * 19 2 1 21 21 O 1.42903 * 109.47224 * 29.99646 * 20 19 2 22 22 Si 1.86299 * 109.46964 * 149.99576 * 20 19 2 23 23 H 1.09002 * 109.47391 * 269.69947 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.70003 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.70130 * 1 2 3 26 26 H 0.97000 * 120.00194 * 0.02562 * 7 5 4 27 27 H 1.09002 * 109.47328 * 299.99860 * 10 8 7 28 28 H 1.09004 * 109.47642 * 59.99775 * 10 8 7 29 29 H 1.08997 * 109.47169 * 59.99788 * 11 10 8 30 30 H 1.09005 * 109.46757 * 179.97438 * 11 10 8 31 31 H 1.08993 * 109.47026 * 295.00489 * 14 12 11 32 32 H 1.09004 * 109.46933 * 55.00192 * 14 12 11 33 33 H 0.96703 * 114.00125 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.47333 * 59.99696 * 16 12 11 35 35 H 1.08997 * 109.46983 * 180.02562 * 16 12 11 36 36 H 1.08997 * 109.47169 * 300.00212 * 17 16 12 37 37 H 1.08998 * 109.47086 * 180.02562 * 17 16 12 38 38 H 1.08000 * 127.24852 * 179.75696 * 18 4 3 39 39 H 1.09000 * 109.47386 * 269.99630 * 20 19 2 40 40 H 0.96697 * 114.00089 * 179.97438 * 21 20 19 41 41 H 1.48502 * 109.99813 * 178.68152 * 22 20 19 42 42 H 1.48506 * 110.00021 * 299.99776 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4740 0.7169 0.0025 5 6 4.6273 1.6398 0.0060 6 8 5.7597 1.1977 0.0030 7 7 4.4241 2.9722 0.0126 8 6 5.5679 3.8875 0.0167 9 1 6.3773 3.4602 -0.5752 10 6 5.1490 5.2299 -0.5861 11 6 6.3437 6.1857 -0.5825 12 6 6.8216 6.3993 0.8552 13 1 6.0125 6.8268 1.4474 14 6 8.0159 7.3556 0.8589 15 8 8.3888 7.6466 2.2073 16 6 7.2406 5.0569 1.4580 17 6 6.0458 4.1011 1.4544 18 6 3.5272 -0.6972 -0.0043 19 6 2.2374 -1.1077 -0.0057 20 6 1.7534 -2.5349 -0.0125 21 8 0.4952 -2.6080 -0.6860 22 14 2.9942 -3.6071 -0.8965 23 1 -0.3634 -0.0054 1.0276 24 1 -0.3633 -0.8873 -0.5185 25 1 -0.3633 0.8927 -0.5092 26 1 3.5205 3.3250 0.0154 27 1 4.8089 5.0779 -1.6105 28 1 4.3395 5.6572 0.0058 29 1 7.1528 5.7582 -1.1746 30 1 6.0453 7.1419 -1.0124 31 1 8.8553 6.8905 0.3421 32 1 7.7428 8.2799 0.3498 33 1 9.1416 8.2485 2.2860 34 1 8.0497 4.6294 0.8659 35 1 7.5806 5.2089 2.4824 36 1 5.2367 4.5286 2.0465 37 1 6.3442 3.1449 1.8843 38 1 4.4108 -1.3181 -0.0081 39 1 1.6372 -2.8840 1.0135 40 1 0.1232 -3.4995 -0.7287 41 1 2.5441 -5.0221 -0.8824 42 1 3.1617 -3.1413 -2.2967 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_7207542_13259642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:10 Heat of formation + Delta-G solvation = -49.974285 kcal Electronic energy + Delta-G solvation = -24095.968192 eV Core-core repulsion = 20464.763221 eV Total energy + Delta-G solvation = -3631.204971 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.82919 -41.01403 -39.47378 -38.10588 -37.42087 -35.26335 -34.39873 -32.83703 -31.79685 -31.32139 -28.55822 -26.90270 -26.10161 -24.19166 -23.72653 -22.23686 -21.98034 -21.17638 -20.48839 -18.73169 -18.53095 -18.14302 -17.54750 -17.38356 -17.25400 -16.33161 -16.09993 -15.83754 -15.74804 -15.35887 -15.02563 -14.88013 -14.81363 -14.52284 -14.12461 -13.93313 -13.68390 -13.45859 -13.38069 -13.16208 -12.99076 -12.86605 -12.42229 -12.26982 -12.11845 -11.86155 -11.64701 -11.44297 -11.34919 -11.14270 -10.99254 -10.80507 -10.29301 -10.00525 -9.88597 -4.88980 0.42846 0.79552 1.25948 1.53488 1.64854 1.97336 2.09244 2.29332 2.93029 3.25326 3.33503 3.50773 3.62517 3.78257 3.92166 4.02389 4.07932 4.28925 4.30252 4.34858 4.36404 4.37027 4.42918 4.48527 4.49983 4.53747 4.62371 4.65942 4.71982 4.82782 4.84614 4.96084 5.06828 5.09778 5.15356 5.21832 5.25162 5.37897 5.42831 5.50681 5.67881 6.37450 6.49539 6.81732 6.91502 7.11033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.265 5.265 3 N -0.269 5.269 4 C -0.040 4.040 5 C 0.604 3.396 6 O -0.564 6.564 7 N -0.705 5.705 8 C 0.146 3.854 9 H 0.075 0.925 10 C -0.118 4.118 11 C -0.105 4.105 12 C -0.088 4.088 13 H 0.072 0.928 14 C 0.076 3.924 15 O -0.596 6.596 16 C -0.102 4.102 17 C -0.123 4.123 18 C -0.192 4.192 19 C 0.025 3.975 20 C -0.046 4.046 21 O -0.553 6.553 22 Si 0.775 3.225 23 H 0.097 0.903 24 H 0.128 0.872 25 H 0.098 0.902 26 H 0.413 0.587 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.395 0.605 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.184 0.816 39 H 0.117 0.883 40 H 0.406 0.594 41 H -0.264 1.264 42 H -0.311 1.311 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 -0.445 0.237 3.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.054 5.054 3 N -0.107 5.107 4 C -0.198 4.198 5 C 0.390 3.610 6 O -0.441 6.441 7 N -0.356 5.356 8 C 0.042 3.958 9 H 0.093 0.907 10 C -0.156 4.156 11 C -0.143 4.143 12 C -0.107 4.107 13 H 0.091 0.909 14 C -0.001 4.001 15 O -0.405 6.405 16 C -0.141 4.141 17 C -0.162 4.162 18 C -0.220 4.220 19 C -0.101 4.101 20 C -0.156 4.156 21 O -0.365 6.365 22 Si 0.678 3.322 23 H 0.115 0.885 24 H 0.146 0.854 25 H 0.117 0.883 26 H 0.250 0.750 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.245 0.755 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.201 0.799 39 H 0.134 0.866 40 H 0.260 0.740 41 H -0.189 1.189 42 H -0.238 1.238 Dipole moment (debyes) X Y Z Total from point charges -4.034 -0.137 -0.358 4.052 hybrid contribution -0.560 -0.435 -0.220 0.742 sum -4.594 -0.572 -0.577 4.665 Atomic orbital electron populations 1.22791 0.70870 1.07275 1.05827 1.45691 1.09072 1.01966 1.48639 1.73440 1.02785 1.14871 1.19613 1.21820 0.90908 0.94448 1.12588 1.17029 0.86325 0.82167 0.75517 1.90776 1.23703 1.77740 1.51884 1.45896 1.11174 1.04739 1.73746 1.21091 0.88166 0.89756 0.96770 0.90722 1.21749 0.99155 0.92851 1.01861 1.21444 0.97605 1.00082 0.95165 1.21189 0.97442 0.94768 0.97261 0.90940 1.22295 0.96738 0.98079 0.82997 1.86432 1.55540 1.70811 1.27675 1.21414 0.97002 0.94354 1.01284 1.21858 0.98726 0.99267 0.96364 1.21645 0.97161 0.93599 1.09579 1.21186 0.90661 0.90430 1.07781 1.24450 0.93494 0.93867 1.03802 1.86336 1.33956 1.36542 1.79681 0.93340 0.85058 0.74889 0.78908 0.88470 0.85415 0.88337 0.75037 0.90254 0.90217 0.91096 0.89551 0.93007 0.92324 0.75522 0.92078 0.92119 0.91396 0.93365 0.79928 0.86567 0.74045 1.18924 1.23833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.21 11.00 127.77 1.41 1.20 16 2 N -0.26 -1.13 3.70 -355.92 -1.32 -2.45 16 3 N -0.27 -2.07 11.67 -48.17 -0.56 -2.63 16 4 C -0.04 -0.38 7.13 42.46 0.30 -0.08 16 5 C 0.60 6.71 7.79 86.75 0.68 7.38 16 6 O -0.56 -9.54 16.59 -3.93 -0.07 -9.61 16 7 N -0.71 -3.77 5.08 -445.52 -2.26 -6.03 16 8 C 0.15 0.53 2.45 44.99 0.11 0.64 16 9 H 0.07 0.55 7.58 -2.39 -0.02 0.53 16 10 C -0.12 0.21 5.39 30.59 0.16 0.37 16 11 C -0.10 0.29 5.20 30.60 0.16 0.45 16 12 C -0.09 -0.02 2.43 -10.79 -0.03 -0.05 16 13 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 14 C 0.08 -0.06 6.43 71.98 0.46 0.40 16 15 O -0.60 -1.32 13.20 -148.98 -1.97 -3.29 16 16 C -0.10 -0.36 5.10 30.59 0.16 -0.20 16 17 C -0.12 -0.58 5.50 30.60 0.17 -0.41 16 18 C -0.19 -1.19 9.35 22.41 0.21 -0.98 16 19 C 0.02 0.08 6.21 41.40 0.26 0.33 16 20 C -0.05 0.19 2.98 71.24 0.21 0.40 16 21 O -0.55 2.88 9.76 -148.98 -1.45 1.42 16 22 Si 0.78 -2.46 31.23 68.60 2.14 -0.32 16 23 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 24 H 0.13 -0.55 5.19 -2.39 -0.01 -0.56 16 25 H 0.10 -0.42 8.14 -2.38 -0.02 -0.44 16 26 H 0.41 0.86 8.33 -92.71 -0.77 0.09 16 27 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 29 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.09 -0.45 8.14 -2.38 -0.02 -0.47 16 31 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.40 -2.41 9.12 -74.06 -0.68 -3.08 16 34 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.06 0.37 7.82 -2.39 -0.02 0.36 16 36 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.18 0.43 7.02 -2.91 -0.02 0.41 16 39 H 0.12 -1.06 7.96 -2.39 -0.02 -1.08 16 40 H 0.41 -5.47 8.74 -74.06 -0.65 -6.12 16 41 H -0.26 0.38 7.11 99.48 0.71 1.09 16 42 H -0.31 -2.16 7.11 99.48 0.71 -1.46 16 Total: 0.00 -22.60 341.87 -2.23 -24.83 By element: Atomic # 1 Polarization: -10.39 SS G_CDS: -1.00 Total: -11.39 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 4.26 Total: 9.46 kcal Atomic # 7 Polarization: -6.96 SS G_CDS: -4.14 Total: -11.10 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -3.49 Total: -11.47 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: 2.14 Total: -0.32 kcal Total: -22.60 -2.23 -24.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_7207542_13259642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.149 kcal (2) G-P(sol) polarization free energy of solvation -22.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds