Wall clock time and date at job start Tue Mar 9 2021 12:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86301 * 109.47058 * 2 1 4 4 C 1.86303 * 109.46984 * 240.00330 * 2 1 3 5 5 C 1.86295 * 109.47058 * 120.00188 * 2 1 3 6 6 C 1.52999 * 109.47259 * 60.00149 * 5 2 1 7 7 N 1.46502 * 109.47152 * 180.02562 * 6 5 2 8 8 C 1.34779 * 119.99861 * 179.97438 * 7 6 5 9 9 O 1.21594 * 119.99923 * 0.02562 * 8 7 6 10 10 C 1.47572 * 119.99650 * 179.97438 * 8 7 6 11 11 C 1.36503 * 120.00563 * 179.97438 * 10 8 7 12 12 N 1.35940 * 120.50299 * 180.02562 * 11 10 8 13 13 C 1.36999 * 132.41397 * 180.02562 * 12 11 10 14 14 C 1.50701 * 126.42589 * 0.02562 * 13 12 11 15 15 O 1.42896 * 109.47417 * 330.00365 * 14 13 12 16 16 Si 1.86301 * 109.47149 * 210.00349 * 14 13 12 17 17 H 1.48506 * 109.47302 * 59.99966 * 16 14 13 18 18 H 1.48503 * 109.47334 * 300.00099 * 16 14 13 19 19 H 1.48500 * 109.47376 * 180.02562 * 16 14 13 20 20 C 1.35004 * 107.14687 * 180.28179 * 13 12 11 21 21 N 1.33587 * 108.65456 * 359.57066 * 20 13 12 22 22 C 1.32419 * 109.22142 * 0.43301 * 21 20 13 23 23 C 1.41248 * 132.11979 * 179.72854 * 22 21 20 24 24 Br 1.89101 * 120.25507 * 0.03437 * 23 22 21 25 25 C 1.35698 * 119.49061 * 180.02562 * 23 22 21 26 26 H 1.09000 * 109.46719 * 299.99927 * 1 2 3 27 27 H 1.09006 * 109.46909 * 60.00046 * 1 2 3 28 28 H 1.08998 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46836 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47553 * 300.00200 * 3 2 1 31 31 H 1.09000 * 109.47296 * 60.00426 * 3 2 1 32 32 H 1.08995 * 109.46814 * 299.99740 * 4 2 1 33 33 H 1.08996 * 109.47081 * 60.00134 * 4 2 1 34 34 H 1.08995 * 109.46967 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47261 * 299.99553 * 5 2 1 36 36 H 1.09001 * 109.46884 * 179.97438 * 5 2 1 37 37 H 1.08999 * 109.46951 * 59.99605 * 6 5 2 38 38 H 1.08995 * 109.47015 * 299.99898 * 6 5 2 39 39 H 0.97000 * 119.99826 * 359.97438 * 7 6 5 40 40 H 1.07994 * 119.74665 * 0.06874 * 11 10 8 41 41 H 1.09002 * 109.46793 * 90.00818 * 14 13 12 42 42 H 0.96708 * 114.00095 * 299.99924 * 15 14 13 43 43 H 1.08000 * 125.67691 * 179.73129 * 20 13 12 44 44 H 1.08007 * 120.23412 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3208 1.5210 7 7 2.4619 -3.0112 2.7175 8 6 2.1358 -4.3014 2.9310 9 8 1.4371 -4.8924 2.1304 10 6 2.6277 -4.9970 4.1360 11 6 2.2971 -6.3036 4.3527 12 7 2.7442 -6.9540 5.4595 13 6 2.5682 -8.2348 5.9129 14 6 1.7711 -9.3213 5.2380 15 8 0.7000 -8.7352 4.4957 16 14 1.0761 -10.4732 6.5268 17 1 0.1943 -9.7117 7.4476 18 1 2.1892 -11.0824 7.2983 19 1 0.2912 -11.5442 5.8618 20 6 3.2379 -8.3393 7.0804 21 7 3.8216 -7.1671 7.3446 22 6 3.5340 -6.3092 6.3777 23 6 3.8884 -4.9571 6.1747 24 35 4.9769 -4.0581 7.4329 25 6 3.4418 -4.3081 5.0698 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1207 2.2704 -0.8899 31 1 2.1208 2.2703 0.8900 32 1 2.1207 -1.9058 -1.5212 33 1 2.1207 -0.3643 -2.4111 34 1 3.5739 -0.8778 -1.5215 35 1 2.1207 -0.3644 2.4111 36 1 3.5740 -0.8786 1.5208 37 1 2.3373 -2.8345 0.6310 38 1 0.8841 -2.3208 1.5210 39 1 3.0195 -2.5398 3.3560 40 1 1.6762 -6.8247 3.6391 41 1 2.4184 -9.8803 4.5623 42 1 0.0828 -8.2215 5.0346 43 1 3.2948 -9.2243 7.6968 44 1 3.7051 -3.2740 4.9028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_9043546_12335884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:17 Heat of formation + Delta-G solvation = -16.282885 kcal Electronic energy + Delta-G solvation = -26433.640381 eV Core-core repulsion = 22557.176803 eV Total energy + Delta-G solvation = -3876.463578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 399.053 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.28457 -41.10481 -38.52777 -38.01129 -36.46520 -35.27985 -32.94308 -31.92238 -31.03909 -30.23979 -29.25108 -28.27801 -28.27239 -26.89392 -25.75566 -24.10543 -23.33895 -22.57348 -21.84503 -19.52547 -18.71571 -18.25208 -17.79295 -17.52777 -16.96259 -16.60619 -16.33589 -15.91308 -15.89506 -15.44239 -15.09609 -15.05106 -14.75065 -14.45521 -14.13315 -13.90057 -13.82696 -13.70350 -13.45273 -13.37378 -13.16514 -13.12983 -13.04220 -12.95347 -12.76657 -12.69031 -12.34324 -12.11139 -12.06464 -11.63033 -11.44984 -11.35834 -11.29936 -10.87944 -10.69651 -10.66931 -10.60979 -10.24731 -9.99909 -9.09862 -0.90779 -0.38813 0.17873 0.88718 1.11790 1.36042 1.51326 1.57234 1.76121 1.76799 1.95084 2.04002 2.04616 2.23921 2.26303 2.76549 2.79166 3.08613 3.20519 3.40867 3.47122 3.49411 3.83076 4.06256 4.20900 4.28041 4.30790 4.39159 4.44943 4.51262 4.73519 4.84438 4.85327 4.89421 4.90004 4.90495 4.91059 4.95022 5.09647 5.23149 5.24892 5.44911 5.55927 5.62666 5.70009 5.70774 6.37079 6.38008 6.47339 7.01967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.103 2.897 3 C -0.466 4.466 4 C -0.476 4.476 5 C -0.434 4.434 6 C 0.119 3.881 7 N -0.706 5.706 8 C 0.572 3.428 9 O -0.568 6.568 10 C -0.170 4.170 11 C 0.160 3.840 12 N -0.357 5.357 13 C -0.083 4.083 14 C -0.052 4.052 15 O -0.551 6.551 16 Si 1.013 2.987 17 H -0.262 1.262 18 H -0.238 1.238 19 H -0.261 1.261 20 C 0.029 3.971 21 N -0.495 5.495 22 C 0.225 3.775 23 C -0.082 4.082 24 Br 0.005 6.995 25 C -0.023 4.023 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.415 0.585 40 H 0.196 0.804 41 H 0.138 0.862 42 H 0.389 0.611 43 H 0.211 0.789 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 3.059 -0.751 3.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.292 2.708 3 C -0.573 4.573 4 C -0.581 4.581 5 C -0.518 4.518 6 C -0.003 4.003 7 N -0.358 5.358 8 C 0.358 3.642 9 O -0.448 6.448 10 C -0.177 4.177 11 C 0.033 3.967 12 N -0.030 5.030 13 C -0.194 4.194 14 C -0.161 4.161 15 O -0.357 6.357 16 Si 0.832 3.168 17 H -0.185 1.185 18 H -0.161 1.161 19 H -0.185 1.185 20 C -0.120 4.120 21 N -0.214 5.214 22 C -0.020 4.020 23 C -0.164 4.164 24 Br 0.090 6.910 25 C -0.049 4.049 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.253 0.747 40 H 0.213 0.787 41 H 0.155 0.845 42 H 0.239 0.761 43 H 0.227 0.773 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.162 2.235 -0.023 2.241 hybrid contribution -0.460 0.370 -0.624 0.859 sum -0.297 2.605 -0.647 2.701 Atomic orbital electron populations 1.26464 1.23032 1.04168 1.04368 0.77753 0.64363 0.64757 0.63880 1.26317 1.06555 1.19983 1.04437 1.26472 1.06531 1.08260 1.16822 1.26615 1.07715 0.99393 1.18071 1.21294 0.99591 0.92577 0.86813 1.46035 1.52860 1.10547 1.26388 1.17636 0.79870 0.82583 0.84135 1.90842 1.39553 1.67031 1.47370 1.19325 1.05691 0.93889 0.98831 1.22294 0.94353 0.92749 0.87260 1.42717 1.33304 1.10744 1.16218 1.22467 1.11308 0.85776 0.99899 1.25074 0.89773 0.96195 1.05086 1.86500 1.39046 1.71708 1.38493 0.84821 0.80191 0.76825 0.74933 1.18536 1.16085 1.18473 1.22929 0.96728 0.97339 0.95026 1.70814 1.24928 1.01536 1.24079 1.20717 0.97355 0.94766 0.89195 1.20563 1.05548 0.91081 0.99223 1.96834 1.64547 1.73546 1.56034 1.21377 0.92522 1.01525 0.89473 0.91078 0.91674 0.91694 0.91018 0.91670 0.90985 0.91719 0.91671 0.91130 0.88175 0.88242 0.91363 0.91264 0.74704 0.78734 0.84458 0.76131 0.77253 0.79706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.26 8.65 113.37 0.98 3.24 16 2 Si 1.10 -9.91 12.19 68.60 0.84 -9.07 16 3 C -0.47 2.99 8.65 113.37 0.98 3.97 16 4 C -0.48 2.19 8.65 113.37 0.98 3.17 16 5 C -0.43 4.28 4.56 71.98 0.33 4.61 16 6 C 0.12 -0.53 5.05 86.38 0.44 -0.10 16 7 N -0.71 2.91 5.51 -466.22 -2.57 0.34 16 8 C 0.57 1.12 7.76 86.71 0.67 1.79 16 9 O -0.57 -5.41 16.27 -4.01 -0.07 -5.47 16 10 C -0.17 -0.06 5.84 -20.35 -0.12 -0.18 16 11 C 0.16 0.35 9.91 83.65 0.83 1.18 16 12 N -0.36 -1.39 2.93 -337.71 -0.99 -2.38 16 13 C -0.08 -0.13 6.25 41.01 0.26 0.13 16 14 C -0.05 0.17 3.06 71.24 0.22 0.39 16 15 O -0.55 1.05 10.90 -148.98 -1.62 -0.58 16 16 Si 1.01 -4.68 26.59 68.60 1.82 -2.86 16 17 H -0.26 0.63 7.11 99.48 0.71 1.33 16 18 H -0.24 1.30 6.84 99.48 0.68 1.98 16 19 H -0.26 0.48 7.11 99.48 0.71 1.19 16 20 C 0.03 0.09 10.44 83.68 0.87 0.97 16 21 N -0.49 -4.34 11.30 -194.10 -2.19 -6.54 16 22 C 0.23 1.52 7.59 134.18 1.02 2.54 16 23 C -0.08 -0.25 6.24 22.42 0.14 -0.11 16 24 Br 0.01 0.01 33.72 -20.37 -0.69 -0.67 16 25 C -0.02 0.05 9.26 22.55 0.21 0.26 16 26 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 27 H 0.06 -0.24 7.96 -2.38 -0.02 -0.26 16 28 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 29 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 30 H 0.06 -0.32 7.96 -2.39 -0.02 -0.34 16 31 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 32 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 33 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 34 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 35 H 0.10 -1.19 7.96 -2.39 -0.02 -1.21 16 36 H 0.10 -1.17 7.96 -2.39 -0.02 -1.19 16 37 H 0.07 -0.20 7.79 -2.39 -0.02 -0.21 16 38 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 39 H 0.41 -4.17 6.51 -92.71 -0.60 -4.78 16 40 H 0.20 0.41 6.19 -2.91 -0.02 0.39 16 41 H 0.14 -0.74 7.96 -2.39 -0.02 -0.76 16 42 H 0.39 -2.72 8.70 -74.05 -0.64 -3.37 16 43 H 0.21 -0.56 6.71 -2.91 -0.02 -0.58 16 44 H 0.19 -1.78 6.44 -2.91 -0.02 -1.79 16 Total: 0.00 -20.47 387.73 2.86 -17.61 By element: Atomic # 1 Polarization: -12.78 SS G_CDS: 0.53 Total: -12.25 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 7.80 Total: 21.87 kcal Atomic # 7 Polarization: -2.82 SS G_CDS: -5.75 Total: -8.57 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -1.69 Total: -6.05 kcal Atomic # 14 Polarization: -14.59 SS G_CDS: 2.66 Total: -11.93 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.67 kcal Total: -20.47 2.86 -17.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_9043546_12335884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.327 kcal (2) G-P(sol) polarization free energy of solvation -20.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds