Wall clock time and date at job start Tue Mar 9 2021 12:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47058 * 2 1 4 4 C 1.86303 * 109.46984 * 239.99858 * 2 1 3 5 5 C 1.86301 * 109.47058 * 120.00188 * 2 1 3 6 6 C 1.52995 * 109.47304 * 60.00089 * 5 2 1 7 7 C 1.52999 * 109.47223 * 180.02562 * 6 5 2 8 8 N 1.46502 * 109.47152 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99861 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99923 * 0.02562 * 9 8 7 11 11 C 1.47572 * 119.99650 * 179.97438 * 9 8 7 12 12 C 1.36503 * 120.00563 * 179.97438 * 11 9 8 13 13 N 1.35940 * 120.50299 * 180.02562 * 12 11 9 14 14 C 1.36999 * 132.41397 * 180.02562 * 13 12 11 15 15 C 1.50701 * 126.42589 * 0.02562 * 14 13 12 16 16 O 1.42896 * 109.47417 * 330.00365 * 15 14 13 17 17 Si 1.86301 * 109.47149 * 210.00349 * 15 14 13 18 18 H 1.48506 * 109.47302 * 59.99966 * 17 15 14 19 19 H 1.48503 * 109.47334 * 300.00099 * 17 15 14 20 20 H 1.48500 * 109.47376 * 180.02562 * 17 15 14 21 21 C 1.35004 * 107.14687 * 180.28179 * 14 13 12 22 22 N 1.33587 * 108.65456 * 359.57066 * 21 14 13 23 23 C 1.32419 * 109.22142 * 0.43301 * 22 21 14 24 24 C 1.41248 * 132.11979 * 179.72854 * 23 22 21 25 25 Br 1.89101 * 120.25507 * 0.03437 * 24 23 22 26 26 C 1.35698 * 119.49061 * 180.02562 * 24 23 22 27 27 H 1.09000 * 109.46719 * 299.99885 * 1 2 3 28 28 H 1.08998 * 109.46745 * 60.00026 * 1 2 3 29 29 H 1.08996 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47300 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47321 * 299.99622 * 3 2 1 32 32 H 1.08999 * 109.47461 * 59.99933 * 3 2 1 33 33 H 1.08993 * 109.47184 * 300.00380 * 4 2 1 34 34 H 1.09005 * 109.46676 * 60.00186 * 4 2 1 35 35 H 1.09001 * 109.46676 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.46776 * 299.99648 * 5 2 1 37 37 H 1.09007 * 109.46710 * 180.02562 * 5 2 1 38 38 H 1.09000 * 109.47365 * 59.99527 * 6 5 2 39 39 H 1.09001 * 109.46816 * 299.99574 * 6 5 2 40 40 H 1.08999 * 109.46951 * 59.99501 * 7 6 5 41 41 H 1.08995 * 109.47015 * 299.99794 * 7 6 5 42 42 H 0.97000 * 119.99826 * 359.97438 * 8 7 6 43 43 H 1.07994 * 119.74665 * 0.06874 * 12 11 9 44 44 H 1.09002 * 109.46793 * 90.00818 * 15 14 13 45 45 H 0.96708 * 114.00095 * 299.99924 * 16 15 14 46 46 H 1.08000 * 125.67691 * 179.73129 * 21 14 13 47 47 H 1.08007 * 120.23412 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9741 -2.3207 1.5211 7 6 2.4835 -3.0418 2.7706 8 7 1.9947 -4.4229 2.7709 9 6 2.3202 -5.2528 3.7818 10 8 3.0192 -4.8550 4.6938 11 6 1.8274 -6.6437 3.7823 12 6 2.1574 -7.4845 4.8058 13 7 1.7093 -8.7679 4.8162 14 6 1.8846 -9.8007 5.6991 15 6 2.6817 -9.7596 6.9775 16 8 3.7535 -8.8245 6.8407 17 14 3.3755 -11.4520 7.3313 18 1 4.2570 -11.8697 6.2116 19 1 2.2617 -12.4239 7.4735 20 1 4.1605 -11.4117 8.5913 21 6 1.2141 -10.8638 5.2064 22 7 0.6307 -10.5065 4.0589 23 6 0.9191 -9.2406 3.7989 24 6 0.5653 -8.3889 2.7291 25 35 -0.5236 -9.0288 1.3217 26 6 1.0128 -7.1078 2.7190 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5741 1.7565 -0.0005 31 1 2.1207 2.2702 -0.8900 32 1 2.1207 2.2703 0.8899 33 1 2.1206 -1.9059 -1.5212 34 1 2.1206 -0.3644 -2.4111 35 1 3.5740 -0.8779 -1.5213 36 1 2.1207 -0.3644 2.4111 37 1 3.5741 -0.8779 1.5213 38 1 2.3373 -2.8346 0.6311 39 1 0.8841 -2.3207 1.5212 40 1 2.1199 -2.5278 3.6604 41 1 3.5735 -3.0418 2.7711 42 1 1.4368 -4.7400 2.0436 43 1 2.7785 -7.1272 5.6137 44 1 2.0346 -9.4531 7.7993 45 1 4.3705 -9.0350 6.1264 46 1 1.1565 -11.8399 5.6649 47 1 0.7500 -6.4463 1.9067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_9704008_12335884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:00 Heat of formation + Delta-G solvation = -21.685937 kcal Electronic energy + Delta-G solvation = -28070.898320 eV Core-core repulsion = 24038.662830 eV Total energy + Delta-G solvation = -4032.235491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 413.068 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.28542 -41.14336 -38.54725 -38.02086 -36.87452 -35.32834 -33.74745 -32.40791 -31.79424 -30.26848 -29.39139 -28.27571 -28.23660 -27.34729 -26.85327 -24.94232 -24.10702 -22.58307 -22.45982 -21.70544 -19.50472 -18.74475 -18.25520 -17.79181 -17.52580 -16.91702 -16.77743 -16.34619 -15.94985 -15.91453 -15.50987 -15.48663 -15.10534 -14.76368 -14.45857 -14.19222 -14.03135 -13.97932 -13.74783 -13.50158 -13.43689 -13.32893 -13.26108 -13.05568 -12.98143 -12.96762 -12.93280 -12.70812 -12.44758 -12.11297 -12.06675 -11.66234 -11.57969 -11.39978 -11.35542 -11.28183 -10.88036 -10.66560 -10.61413 -10.38116 -10.28409 -10.01647 -9.09893 -0.91094 -0.38857 0.18181 0.88494 1.11361 1.35869 1.51090 1.57322 1.76422 1.90025 1.96601 2.05365 2.11023 2.14094 2.23039 2.79221 2.80456 3.07261 3.18663 3.38119 3.46875 3.48674 3.82694 4.06744 4.18001 4.21456 4.28220 4.37558 4.42318 4.45031 4.51177 4.74999 4.82016 4.85541 4.85955 4.90891 4.92262 4.93647 4.93950 4.95224 5.12028 5.24845 5.28816 5.32381 5.55345 5.56138 5.64929 5.72426 5.73941 6.33948 6.36956 6.47307 6.99623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.090 2.910 3 C -0.476 4.476 4 C -0.467 4.467 5 C -0.420 4.420 6 C -0.122 4.122 7 C 0.117 3.883 8 N -0.707 5.707 9 C 0.575 3.425 10 O -0.568 6.568 11 C -0.169 4.169 12 C 0.160 3.840 13 N -0.357 5.357 14 C -0.084 4.084 15 C -0.052 4.052 16 O -0.551 6.551 17 Si 1.012 2.988 18 H -0.261 1.261 19 H -0.237 1.237 20 H -0.261 1.261 21 C 0.029 3.971 22 N -0.494 5.494 23 C 0.225 3.775 24 C -0.081 4.081 25 Br 0.006 6.994 26 C -0.023 4.023 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.416 0.584 43 H 0.195 0.805 44 H 0.138 0.862 45 H 0.389 0.611 46 H 0.211 0.789 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 1.932 -2.140 2.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.281 2.719 3 C -0.581 4.581 4 C -0.573 4.573 5 C -0.505 4.505 6 C -0.159 4.159 7 C -0.006 4.006 8 N -0.359 5.359 9 C 0.361 3.639 10 O -0.449 6.449 11 C -0.177 4.177 12 C 0.034 3.966 13 N -0.030 5.030 14 C -0.195 4.195 15 C -0.161 4.161 16 O -0.358 6.358 17 Si 0.831 3.169 18 H -0.185 1.185 19 H -0.160 1.160 20 H -0.185 1.185 21 C -0.120 4.120 22 N -0.213 5.213 23 C -0.020 4.020 24 C -0.164 4.164 25 Br 0.091 6.909 26 C -0.049 4.049 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.254 0.746 43 H 0.212 0.788 44 H 0.155 0.845 45 H 0.239 0.761 46 H 0.227 0.773 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.165 0.900 -1.784 2.005 hybrid contribution 0.486 0.817 -0.025 0.951 sum 0.321 1.717 -1.809 2.514 Atomic orbital electron populations 1.26370 1.22309 1.04665 1.04017 0.77963 0.64941 0.64230 0.64791 1.26454 1.06287 1.21315 1.04033 1.26364 1.06224 1.08674 1.16060 1.26253 1.06338 1.01368 1.16542 1.21498 1.02333 0.95474 0.96635 1.21644 0.99280 0.79633 1.00030 1.45831 1.52991 1.12612 1.24501 1.17595 0.79767 0.84218 0.82355 1.90848 1.39545 1.77289 1.37172 1.19283 1.05749 0.95358 0.97280 1.22284 0.94321 0.80731 0.99286 1.42712 1.33300 1.09086 1.17881 1.22463 1.11318 0.87535 0.98158 1.25070 0.89750 1.08167 0.93133 1.86500 1.39018 1.51567 1.58677 0.84833 0.80222 0.71589 0.80206 1.18530 1.16042 1.18473 1.22929 0.96703 1.00026 0.92333 1.70816 1.24922 1.08414 1.17180 1.20726 0.97315 0.92082 0.91881 1.20565 1.05523 0.94796 0.95496 1.96838 1.64500 1.89164 1.40405 1.21378 0.92484 0.93251 0.97745 0.91587 0.91889 0.90628 0.91562 0.91801 0.91583 0.90611 0.91895 0.91549 0.90306 0.90253 0.89434 0.89508 0.92136 0.92024 0.74562 0.78796 0.84456 0.76135 0.77252 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.93 8.65 113.37 0.98 3.91 16 2 Si 1.09 -9.66 12.19 68.60 0.84 -8.82 16 3 C -0.48 1.98 8.65 113.37 0.98 2.97 16 4 C -0.47 2.98 8.65 113.37 0.98 3.96 16 5 C -0.42 3.38 4.45 71.98 0.32 3.70 16 6 C -0.12 1.08 4.70 30.59 0.14 1.23 16 7 C 0.12 -0.43 5.67 86.38 0.49 0.06 16 8 N -0.71 3.09 5.51 -466.22 -2.57 0.52 16 9 C 0.57 1.08 7.76 86.71 0.67 1.75 16 10 O -0.57 -5.61 16.27 -4.01 -0.07 -5.68 16 11 C -0.17 -0.02 5.84 -20.35 -0.12 -0.14 16 12 C 0.16 0.33 9.91 83.65 0.83 1.16 16 13 N -0.36 -1.32 2.93 -337.71 -0.99 -2.31 16 14 C -0.08 -0.12 6.25 41.01 0.26 0.14 16 15 C -0.05 0.17 3.06 71.24 0.22 0.39 16 16 O -0.55 1.05 10.90 -148.98 -1.62 -0.58 16 17 Si 1.01 -4.69 26.59 68.60 1.82 -2.87 16 18 H -0.26 0.63 7.11 99.48 0.71 1.34 16 19 H -0.24 1.31 6.84 99.48 0.68 1.99 16 20 H -0.26 0.48 7.11 99.48 0.71 1.19 16 21 C 0.03 0.09 10.44 83.68 0.87 0.97 16 22 N -0.49 -4.24 11.30 -194.10 -2.19 -6.44 16 23 C 0.23 1.46 7.59 134.18 1.02 2.48 16 24 C -0.08 -0.22 6.24 22.42 0.14 -0.08 16 25 Br 0.01 0.01 33.72 -20.37 -0.69 -0.67 16 26 C -0.02 0.06 9.26 22.55 0.21 0.27 16 27 H 0.06 -0.36 7.96 -2.39 -0.02 -0.37 16 28 H 0.06 -0.30 7.96 -2.39 -0.02 -0.32 16 29 H 0.07 -0.57 7.79 -2.39 -0.02 -0.58 16 30 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 31 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 32 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 33 H 0.07 -0.58 7.79 -2.39 -0.02 -0.60 16 34 H 0.06 -0.31 7.96 -2.38 -0.02 -0.33 16 35 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 36 H 0.08 -0.58 7.96 -2.39 -0.02 -0.60 16 37 H 0.08 -0.59 7.96 -2.38 -0.02 -0.61 16 38 H 0.09 -1.00 7.79 -2.39 -0.02 -1.02 16 39 H 0.09 -0.98 7.79 -2.39 -0.02 -1.00 16 40 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.42 -4.50 6.51 -92.71 -0.60 -5.10 16 43 H 0.20 0.40 6.19 -2.91 -0.02 0.38 16 44 H 0.14 -0.75 7.96 -2.39 -0.02 -0.77 16 45 H 0.39 -2.72 8.70 -74.05 -0.64 -3.37 16 46 H 0.21 -0.59 6.71 -2.91 -0.02 -0.60 16 47 H 0.19 -1.91 6.44 -2.91 -0.02 -1.93 16 Total: 0.00 -20.70 409.22 3.01 -17.68 By element: Atomic # 1 Polarization: -14.08 SS G_CDS: 0.49 Total: -13.59 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 7.99 Total: 22.76 kcal Atomic # 7 Polarization: -2.47 SS G_CDS: -5.75 Total: -8.23 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -1.69 Total: -6.26 kcal Atomic # 14 Polarization: -14.35 SS G_CDS: 2.66 Total: -11.69 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.67 kcal Total: -20.70 3.01 -17.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_9704008_12335884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.004 kcal (2) G-P(sol) polarization free energy of solvation -20.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds