Wall clock time and date at job start Tue Mar 9 2021 12:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28466 * 124.88740 * 2 1 4 4 C 1.31814 * 110.07077 * 180.29399 * 3 2 1 5 5 C 1.47719 * 126.51385 * 179.74058 * 4 3 2 6 6 O 1.21574 * 119.99579 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00148 * 359.97215 * 5 4 3 8 8 C 1.46506 * 119.99808 * 180.02562 * 7 5 4 9 9 H 1.08995 * 112.85089 * 336.19961 * 8 7 5 10 10 C 1.53783 * 113.61056 * 107.50268 * 8 7 5 11 11 C 1.53782 * 87.08038 * 89.11557 * 10 8 7 12 12 H 1.09001 * 113.61341 * 270.88197 * 11 10 8 13 13 C 1.50703 * 113.69243 * 139.98960 * 11 10 8 14 14 C 1.38235 * 119.99783 * 322.19100 * 13 11 10 15 15 C 1.38240 * 119.99867 * 179.74150 * 14 13 11 16 16 C 1.38236 * 119.99642 * 0.53248 * 15 14 13 17 17 C 1.38234 * 120.00180 * 359.74550 * 16 15 14 18 18 C 1.38228 * 119.99996 * 359.97438 * 17 16 15 19 19 C 1.53776 * 113.61310 * 204.99899 * 8 7 5 20 20 C 1.41492 * 106.96793 * 359.71552 * 4 3 2 21 21 C 1.35035 * 124.88353 * 179.80718 * 2 1 3 22 22 C 1.50701 * 126.38517 * 359.97438 * 21 2 1 23 23 O 1.42903 * 109.46878 * 329.71420 * 22 21 2 24 24 Si 1.86303 * 109.47233 * 209.71649 * 22 21 2 25 25 H 1.09004 * 109.47203 * 270.19387 * 1 2 3 26 26 H 1.09006 * 109.47014 * 30.19114 * 1 2 3 27 27 H 1.08994 * 109.47337 * 150.19150 * 1 2 3 28 28 H 0.96999 * 120.00062 * 359.97438 * 7 5 4 29 29 H 1.09001 * 113.61386 * 203.66490 * 10 8 7 30 30 H 1.09001 * 113.61454 * 334.56755 * 10 8 7 31 31 H 1.08005 * 119.99836 * 0.02562 * 14 13 11 32 32 H 1.08000 * 120.00024 * 180.29505 * 15 14 13 33 33 H 1.07996 * 119.99543 * 179.76793 * 16 15 14 34 34 H 1.07995 * 119.99975 * 180.02562 * 17 16 15 35 35 H 1.08001 * 120.00353 * 180.02562 * 18 17 16 36 36 H 1.09002 * 113.61496 * 25.43503 * 19 8 7 37 37 H 1.09000 * 113.61570 * 156.24978 * 19 8 7 38 38 H 1.07998 * 127.25624 * 180.02562 * 20 4 3 39 39 H 1.09002 * 109.47060 * 89.71550 * 22 21 2 40 40 H 0.96700 * 114.00234 * 299.99722 * 23 22 21 41 41 H 1.48502 * 109.99951 * 180.02562 * 24 22 21 42 42 H 1.48507 * 109.99767 * 301.31682 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4740 0.7167 -0.0064 5 6 4.6273 1.6397 -0.0139 6 8 5.7598 1.1974 -0.0188 7 7 4.4242 2.9720 -0.0153 8 6 5.5681 3.8874 -0.0233 9 1 6.4750 3.4351 0.3779 10 6 5.7768 4.6006 -1.3697 11 6 4.8349 5.6973 -0.8453 12 1 3.7834 5.5110 -1.0640 13 6 5.2698 7.0937 -1.2087 14 6 6.6127 7.4215 -1.2078 15 6 7.0120 8.7010 -1.5464 16 6 6.0677 9.6555 -1.8751 17 6 4.7244 9.3291 -1.8703 18 6 4.3255 8.0482 -1.5374 19 6 5.2544 5.2704 0.5713 20 6 3.5272 -0.6972 -0.0040 21 6 2.2372 -1.1077 0.0037 22 6 1.7533 -2.5349 0.0091 23 8 0.4988 -2.6099 0.6893 24 14 2.9989 -3.6098 0.8832 25 1 -0.3634 0.0035 1.0277 26 1 -0.3633 0.8883 -0.5168 27 1 -0.3634 -0.8916 -0.5108 28 1 3.5207 3.3249 -0.0117 29 1 6.7995 4.9426 -1.5287 30 1 5.3759 4.0513 -2.2215 31 1 7.3502 6.6768 -0.9471 32 1 8.0615 8.9558 -1.5503 33 1 6.3794 10.6560 -2.1359 34 1 3.9867 10.0747 -2.1275 35 1 3.2761 7.7931 -1.5341 36 1 4.4318 5.2620 1.2863 37 1 6.1341 5.7950 0.9443 38 1 4.4107 -1.3183 -0.0073 39 1 1.6314 -2.8811 -1.0173 40 1 0.5325 -2.3166 1.6101 41 1 2.5335 -5.0199 0.8947 42 1 4.3162 -3.5157 0.2042 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_9705150_13259642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:43 Heat of formation + Delta-G solvation = 72.193670 kcal Electronic energy + Delta-G solvation = -25017.379538 eV Core-core repulsion = 21352.787416 eV Total energy + Delta-G solvation = -3664.592122 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.87486 -41.52254 -40.18149 -38.69114 -38.01565 -34.79411 -34.26650 -32.64621 -31.85984 -31.53500 -28.61986 -26.91344 -26.72143 -26.10995 -24.41375 -23.45866 -22.39351 -22.24112 -21.08858 -20.12132 -19.15543 -18.10069 -17.58768 -17.51789 -17.12683 -16.95020 -16.21164 -16.17850 -16.02018 -15.73366 -15.56603 -15.24809 -15.04736 -14.98657 -14.51491 -14.24650 -14.06209 -14.01365 -13.63358 -13.46044 -13.44537 -13.10896 -12.75667 -12.62405 -12.37403 -12.16795 -11.87057 -11.76424 -11.70587 -11.35738 -11.18075 -10.93250 -10.33287 -10.04516 -9.99433 -9.80774 -9.54590 -4.97477 0.39468 0.44228 0.50952 0.78467 1.18253 1.53378 1.70407 1.95914 2.05009 2.23655 2.84253 3.16957 3.29946 3.33789 3.44962 3.68447 3.71966 3.92523 3.98800 4.05879 4.16254 4.24949 4.29154 4.30963 4.34999 4.40730 4.46901 4.56670 4.60169 4.63001 4.68614 4.73929 4.75798 4.83481 4.95396 4.99436 5.12623 5.13902 5.18016 5.19549 5.49798 5.59809 5.65078 5.65956 5.75255 6.13449 6.33538 6.56604 6.79126 7.06895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.258 5.258 3 N -0.259 5.259 4 C -0.038 4.038 5 C 0.606 3.394 6 O -0.568 6.568 7 N -0.688 5.688 8 C 0.114 3.886 9 H 0.093 0.907 10 C -0.142 4.142 11 C -0.066 4.066 12 H 0.104 0.896 13 C -0.079 4.079 14 C -0.127 4.127 15 C -0.130 4.130 16 C -0.138 4.138 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.198 4.198 21 C -0.005 4.005 22 C -0.034 4.034 23 O -0.543 6.543 24 Si 0.788 3.212 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.415 0.585 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.160 0.840 39 H 0.128 0.872 40 H 0.398 0.602 41 H -0.281 1.281 42 H -0.292 1.292 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 1.002 2.860 6.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.047 5.047 3 N -0.098 5.098 4 C -0.195 4.195 5 C 0.392 3.608 6 O -0.445 6.445 7 N -0.339 5.339 8 C 0.009 3.991 9 H 0.112 0.888 10 C -0.180 4.180 11 C -0.084 4.084 12 H 0.122 0.878 13 C -0.079 4.079 14 C -0.145 4.145 15 C -0.148 4.148 16 C -0.156 4.156 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.160 4.160 20 C -0.226 4.226 21 C -0.131 4.131 22 C -0.146 4.146 23 O -0.350 6.350 24 Si 0.692 3.308 25 H 0.129 0.871 26 H 0.118 0.882 27 H 0.133 0.867 28 H 0.253 0.747 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.177 0.823 39 H 0.145 0.855 40 H 0.249 0.751 41 H -0.208 1.208 42 H -0.219 1.219 Dipole moment (debyes) X Y Z Total from point charges -5.395 0.739 2.238 5.888 hybrid contribution 0.123 -0.099 -0.837 0.851 sum -5.272 0.640 1.401 5.493 Atomic orbital electron populations 1.22677 0.70264 1.06562 1.06661 1.45729 1.09107 1.01632 1.48224 1.73473 1.02429 1.14701 1.19151 1.21701 0.90977 0.94112 1.12759 1.17058 0.86383 0.82098 0.75304 1.90789 1.24031 1.77767 1.51950 1.45433 1.10619 1.04389 1.73462 1.21938 0.89708 0.89637 0.97836 0.88845 1.23557 1.01053 0.96387 0.97024 1.21558 1.00086 0.90141 0.96659 0.87802 1.19853 0.93541 0.95350 0.99140 1.21237 0.95829 0.96982 1.00425 1.21435 1.00449 0.93600 0.99278 1.21450 0.93494 1.00278 1.00344 1.21430 0.96581 0.97028 0.99775 1.21316 1.00037 0.93413 0.99938 1.23359 1.03330 0.93291 0.96019 1.21621 0.97361 0.93758 1.09863 1.22131 0.90559 0.92309 1.08110 1.24794 0.94813 0.91974 1.02987 1.86479 1.28909 1.88946 1.30680 0.93183 0.73430 0.75602 0.88579 0.87120 0.88212 0.86655 0.74749 0.88098 0.91801 0.84928 0.84816 0.84949 0.84835 0.84995 0.89611 0.87706 0.82270 0.85513 0.75096 1.20775 1.21912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.64 10.12 127.77 1.29 0.66 16 2 N -0.26 0.14 3.70 -355.92 -1.32 -1.18 16 3 N -0.26 -1.00 11.67 -48.17 -0.56 -1.56 16 4 C -0.04 -0.28 7.13 42.46 0.30 0.03 16 5 C 0.61 5.80 7.83 86.75 0.68 6.48 16 6 O -0.57 -9.39 16.52 -3.95 -0.07 -9.45 16 7 N -0.69 -2.27 5.26 -443.02 -2.33 -4.60 16 8 C 0.11 0.20 4.32 45.52 0.20 0.40 16 9 H 0.09 0.47 7.46 -2.39 -0.02 0.46 16 10 C -0.14 -0.11 7.26 31.12 0.23 0.11 16 11 C -0.07 0.08 3.85 -11.01 -0.04 0.04 16 12 H 0.10 -0.28 8.09 -2.39 -0.02 -0.29 16 13 C -0.08 -0.11 5.29 -19.86 -0.11 -0.22 16 14 C -0.13 -0.19 8.60 22.27 0.19 0.00 16 15 C -0.13 -0.23 10.05 22.27 0.22 -0.01 16 16 C -0.14 -0.26 10.05 22.27 0.22 -0.04 16 17 C -0.13 -0.23 10.05 22.27 0.22 -0.01 16 18 C -0.13 -0.21 9.71 22.27 0.22 0.00 16 19 C -0.12 0.27 7.29 31.12 0.23 0.50 16 20 C -0.20 -1.06 9.35 22.41 0.21 -0.85 16 21 C -0.01 0.00 6.18 41.40 0.26 0.26 16 22 C -0.03 0.15 2.87 71.24 0.20 0.36 16 23 O -0.54 4.09 10.42 -148.98 -1.55 2.53 16 24 Si 0.79 -2.85 31.37 68.60 2.15 -0.70 16 25 H 0.11 -1.38 8.14 -2.38 -0.02 -1.40 16 26 H 0.10 -0.91 8.14 -2.38 -0.02 -0.93 16 27 H 0.12 -1.07 6.78 -2.39 -0.02 -1.09 16 28 H 0.42 -0.11 8.43 -92.71 -0.78 -0.89 16 29 H 0.10 -0.02 6.33 -2.39 -0.02 -0.03 16 30 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.13 -0.18 6.68 -2.91 -0.02 -0.19 16 32 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 33 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 34 H 0.13 -0.22 8.06 -2.91 -0.02 -0.25 16 35 H 0.13 -0.22 8.05 -2.91 -0.02 -0.24 16 36 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.10 -0.30 7.72 -2.39 -0.02 -0.32 16 38 H 0.16 0.94 6.84 -2.91 -0.02 0.92 16 39 H 0.13 -0.57 7.96 -2.39 -0.02 -0.59 16 40 H 0.40 -5.84 8.70 -74.06 -0.64 -6.48 16 41 H -0.28 -0.54 7.11 99.48 0.71 0.17 16 42 H -0.29 -1.04 6.83 99.48 0.68 -0.36 16 Total: 0.00 -19.81 352.62 0.50 -19.32 By element: Atomic # 1 Polarization: -11.71 SS G_CDS: -0.36 Total: -12.07 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 4.53 Total: 7.70 kcal Atomic # 7 Polarization: -3.13 SS G_CDS: -4.21 Total: -7.34 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -1.62 Total: -6.92 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: 2.15 Total: -0.70 kcal Total: -19.81 0.50 -19.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_9705150_13259642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.511 kcal (2) G-P(sol) polarization free energy of solvation -19.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds