Wall clock time and date at job start Tue Mar 9 2021 12:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28467 * 124.89002 * 2 1 4 4 C 1.31806 * 110.07157 * 180.20159 * 3 2 1 5 5 C 1.47717 * 126.51539 * 179.81567 * 4 3 2 6 6 O 1.21569 * 120.00135 * 179.68660 * 5 4 3 7 7 N 1.34776 * 119.99851 * 359.68853 * 5 4 3 8 8 C 1.46503 * 119.99698 * 179.97438 * 7 5 4 9 9 H 1.08997 * 112.85001 * 23.80857 * 8 7 5 10 10 C 1.53782 * 113.61216 * 155.00151 * 8 7 5 11 11 C 1.53772 * 87.08320 * 89.11435 * 10 8 7 12 12 H 1.09003 * 113.61954 * 270.79961 * 11 10 8 13 13 C 1.50708 * 113.61462 * 139.97887 * 11 10 8 14 14 C 1.38211 * 119.99817 * 120.00339 * 13 11 10 15 15 C 1.38260 * 120.00003 * 179.97438 * 14 13 11 16 16 C 1.50700 * 120.00057 * 179.97438 * 15 14 13 17 17 F 1.39901 * 109.46752 * 179.97438 * 16 15 14 18 18 F 1.39898 * 109.47284 * 299.98231 * 16 15 14 19 19 F 1.39904 * 109.46578 * 59.98440 * 16 15 14 20 20 C 1.38215 * 119.99681 * 359.97438 * 15 14 13 21 21 C 1.38256 * 120.00141 * 359.97114 * 20 15 14 22 22 C 1.38211 * 120.00062 * 0.28711 * 21 20 15 23 23 C 1.53780 * 87.08295 * 25.43263 * 11 10 8 24 24 C 1.41498 * 106.96481 * 359.55331 * 4 3 2 25 25 C 1.35042 * 124.87943 * 179.70386 * 2 1 3 26 26 C 1.50696 * 126.38742 * 359.95979 * 25 2 1 27 27 O 1.42902 * 109.47079 * 330.00294 * 26 25 2 28 28 Si 1.86293 * 109.47388 * 209.99950 * 26 25 2 29 29 H 1.08995 * 109.47164 * 270.30013 * 1 2 3 30 30 H 1.09006 * 109.46303 * 30.29582 * 1 2 3 31 31 H 1.08992 * 109.47260 * 150.28990 * 1 2 3 32 32 H 0.97003 * 119.99959 * 359.97438 * 7 5 4 33 33 H 1.09006 * 113.61773 * 334.56777 * 10 8 7 34 34 H 1.09000 * 113.69361 * 203.68003 * 10 8 7 35 35 H 1.08002 * 120.00349 * 0.02562 * 14 13 11 36 36 H 1.07999 * 119.99782 * 179.97438 * 20 15 14 37 37 H 1.08002 * 119.99676 * 180.02562 * 21 20 15 38 38 H 1.07998 * 120.00348 * 179.72205 * 22 21 20 39 39 H 1.08997 * 113.61530 * 89.11028 * 23 11 10 40 40 H 1.08992 * 113.61934 * 220.01869 * 23 11 10 41 41 H 1.08007 * 127.24496 * 180.26287 * 24 4 3 42 42 H 1.09007 * 109.46941 * 89.99924 * 26 25 2 43 43 H 0.96695 * 113.99944 * 299.99518 * 27 26 25 44 44 H 1.48503 * 109.99892 * 58.68147 * 28 26 25 45 45 H 1.48496 * 110.00350 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1999 1.0538 0.0000 4 6 3.4741 0.7167 -0.0044 5 6 4.6274 1.6396 -0.0096 6 8 5.7598 1.1973 -0.0076 7 7 4.4243 2.9719 -0.0167 8 6 5.5682 3.8872 -0.0214 9 1 6.4729 3.4320 -0.4243 10 6 5.2514 5.2660 -0.6242 11 6 4.8395 5.7030 0.7915 12 1 3.7889 5.5197 1.0168 13 6 5.2782 7.1012 1.1433 14 6 4.3370 8.0591 1.4702 15 6 4.7394 9.3417 1.7934 16 6 3.7131 10.3863 2.1493 17 9 4.3576 11.5944 2.4363 18 9 2.8396 10.5680 1.0718 19 9 2.9896 9.9660 3.2706 20 6 6.0830 9.6658 1.7902 21 6 7.0246 8.7073 1.4642 22 6 6.6219 7.4266 1.1359 23 6 5.7842 4.6101 1.3187 24 6 3.5271 -0.6973 0.0032 25 6 2.2373 -1.1078 0.0057 26 6 1.7533 -2.5349 0.0140 27 8 0.4957 -2.6075 0.6887 28 14 2.9948 -3.6067 0.8974 29 1 -0.3633 0.0054 1.0276 30 1 -0.3632 0.8874 -0.5185 31 1 -0.3633 -0.8925 -0.5093 32 1 3.5207 3.3248 -0.0187 33 1 4.4248 5.2525 -1.3347 34 1 6.1283 5.7896 -1.0050 35 1 3.2871 7.8055 1.4739 36 1 6.3973 10.6678 2.0423 37 1 8.0745 8.9606 1.4621 38 1 7.3571 6.6791 0.8769 39 1 6.8077 4.9532 1.4695 40 1 5.3880 4.0670 2.1765 41 1 4.4108 -1.3183 0.0063 42 1 1.6360 -2.8847 -1.0118 43 1 0.5252 -2.3110 1.6086 44 1 3.1874 -3.1206 2.2873 45 1 2.5295 -5.0168 0.9118 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_9705318_13259642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:03 Heat of formation + Delta-G solvation = -75.897701 kcal Electronic energy + Delta-G solvation = -33967.167327 eV Core-core repulsion = 28732.253936 eV Total energy + Delta-G solvation = -5234.913391 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.129 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -51.24792 -48.77508 -48.72044 -43.84621 -41.59271 -40.34455 -38.86693 -38.16115 -34.82697 -34.30275 -32.89278 -32.62342 -31.96935 -28.64932 -27.16608 -26.93373 -26.64657 -26.20907 -24.34154 -23.46011 -22.47865 -22.20180 -21.08875 -20.38736 -19.57517 -19.45281 -19.19698 -18.98951 -17.65656 -17.62934 -17.33317 -17.14773 -17.00123 -16.42632 -16.18033 -15.97487 -15.71184 -15.64287 -15.59739 -15.53704 -15.23289 -15.16409 -14.99499 -14.88536 -14.85132 -14.71590 -14.48066 -14.22719 -14.08045 -13.79482 -13.67905 -13.41890 -13.40885 -13.22310 -12.91126 -12.69098 -12.40143 -12.28175 -12.00268 -11.89596 -11.77304 -11.32532 -11.24970 -11.07875 -10.30583 -10.20388 -10.00882 -9.97564 -9.79940 -4.88943 -0.08941 0.22565 0.43180 0.82174 1.22333 1.54016 1.59804 1.67605 1.94242 2.08588 2.28754 2.43035 2.66387 2.94475 3.09281 3.30639 3.33822 3.34898 3.43847 3.63620 3.70287 3.83360 3.92984 3.99815 4.08096 4.10129 4.23977 4.28951 4.35425 4.39125 4.44120 4.48887 4.62954 4.64576 4.66423 4.70403 4.78039 4.86548 4.89862 4.94784 5.03217 5.13158 5.17705 5.25726 5.32335 5.43770 5.60109 5.67329 5.78276 6.27294 6.37498 6.81055 7.11134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.265 5.265 3 N -0.265 5.265 4 C -0.040 4.040 5 C 0.607 3.393 6 O -0.562 6.562 7 N -0.692 5.692 8 C 0.113 3.887 9 H 0.098 0.902 10 C -0.123 4.123 11 C -0.070 4.070 12 H 0.104 0.896 13 C -0.072 4.072 14 C -0.078 4.078 15 C -0.195 4.195 16 C 0.506 3.494 17 F -0.181 7.181 18 F -0.183 7.183 19 F -0.184 7.184 20 C -0.088 4.088 21 C -0.116 4.116 22 C -0.084 4.084 23 C -0.139 4.139 24 C -0.186 4.186 25 C -0.013 4.013 26 C -0.045 4.045 27 O -0.538 6.538 28 Si 0.783 3.217 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.414 0.586 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.182 0.818 42 H 0.146 0.854 43 H 0.388 0.612 44 H -0.295 1.295 45 H -0.285 1.285 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -2.432 -1.968 3.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.054 5.054 3 N -0.103 5.103 4 C -0.198 4.198 5 C 0.393 3.607 6 O -0.439 6.439 7 N -0.343 5.343 8 C 0.008 3.992 9 H 0.116 0.884 10 C -0.161 4.161 11 C -0.088 4.088 12 H 0.122 0.878 13 C -0.072 4.072 14 C -0.096 4.096 15 C -0.196 4.196 16 C 0.452 3.548 17 F -0.162 7.162 18 F -0.164 7.164 19 F -0.165 7.165 20 C -0.106 4.106 21 C -0.134 4.134 22 C -0.102 4.102 23 C -0.178 4.178 24 C -0.214 4.214 25 C -0.138 4.138 26 C -0.155 4.155 27 O -0.345 6.345 28 Si 0.686 3.314 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.251 0.749 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.176 0.824 38 H 0.173 0.827 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.200 0.800 42 H 0.163 0.837 43 H 0.238 0.762 44 H -0.221 1.221 45 H -0.211 1.211 Dipole moment (debyes) X Y Z Total from point charges -0.534 -2.527 -1.869 3.188 hybrid contribution -1.279 0.493 0.981 1.686 sum -1.813 -2.034 -0.888 2.866 Atomic orbital electron populations 1.22602 0.70797 1.06720 1.05978 1.45690 1.08968 1.01936 1.48826 1.73459 1.02752 1.14757 1.19369 1.21823 0.90877 0.94521 1.12623 1.17002 0.86347 0.82035 0.75342 1.90789 1.23717 1.77680 1.51701 1.45475 1.10648 1.04538 1.73614 1.21957 0.89761 0.89575 0.97893 0.88387 1.23404 1.03572 0.93507 0.95642 1.21605 1.00485 0.89485 0.97207 0.87812 1.19784 0.93278 0.95163 0.99006 1.20928 1.00984 0.91070 0.96614 1.19994 0.94061 0.94622 1.10908 1.18513 0.80886 0.81072 0.74314 1.93160 1.81318 1.48162 1.93574 1.93209 1.71655 1.95739 1.55818 1.93210 1.79689 1.89963 1.53656 1.21256 0.90928 1.01464 0.96915 1.21488 1.00869 0.92625 0.98401 1.21595 0.95714 0.97085 0.95771 1.23580 1.01131 0.95931 0.97113 1.21726 0.97438 0.93512 1.08739 1.22181 0.91013 0.92071 1.08577 1.24852 0.93418 0.92071 1.05140 1.86581 1.29350 1.88390 1.30204 0.93230 0.83892 0.74776 0.79476 0.88233 0.88021 0.86536 0.74948 0.89886 0.86983 0.84627 0.83887 0.82405 0.82702 0.87244 0.91625 0.80045 0.83656 0.76215 1.22136 1.21118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.55 10.12 127.77 1.29 0.74 16 2 N -0.26 0.06 3.70 -355.93 -1.32 -1.25 16 3 N -0.27 -0.92 11.67 -48.17 -0.56 -1.48 16 4 C -0.04 -0.22 7.13 42.46 0.30 0.08 16 5 C 0.61 4.24 7.83 86.75 0.68 4.92 16 6 O -0.56 -7.30 16.52 -3.93 -0.06 -7.36 16 7 N -0.69 -0.64 5.26 -443.02 -2.33 -2.97 16 8 C 0.11 -0.20 4.33 45.52 0.20 0.00 16 9 H 0.10 0.11 7.46 -2.39 -0.02 0.09 16 10 C -0.12 0.72 7.29 31.12 0.23 0.94 16 11 C -0.07 0.34 3.86 -11.01 -0.04 0.30 16 12 H 0.10 -0.56 8.09 -2.39 -0.02 -0.58 16 13 C -0.07 0.21 5.29 -19.86 -0.11 0.10 16 14 C -0.08 0.00 9.26 22.27 0.21 0.20 16 15 C -0.19 -0.39 5.37 -19.86 -0.11 -0.50 16 16 C 0.51 2.32 3.32 71.24 0.24 2.56 16 17 F -0.18 -0.96 15.97 44.97 0.72 -0.24 16 18 F -0.18 -1.11 17.24 44.97 0.78 -0.33 16 19 F -0.18 -1.16 17.24 44.97 0.78 -0.39 16 20 C -0.09 0.05 9.43 22.27 0.21 0.26 16 21 C -0.12 0.47 10.05 22.27 0.22 0.69 16 22 C -0.08 0.40 8.60 22.27 0.19 0.59 16 23 C -0.14 0.50 7.25 31.12 0.23 0.73 16 24 C -0.19 -0.46 9.35 22.41 0.21 -0.25 16 25 C -0.01 0.01 6.18 41.40 0.26 0.27 16 26 C -0.04 0.23 2.87 71.23 0.20 0.43 16 27 O -0.54 2.71 10.40 -148.98 -1.55 1.16 16 28 Si 0.78 -3.19 31.23 68.60 2.14 -1.05 16 29 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.10 -0.84 8.14 -2.38 -0.02 -0.86 16 31 H 0.12 -0.98 6.77 -2.39 -0.02 -1.00 16 32 H 0.41 -0.78 8.43 -92.71 -0.78 -1.56 16 33 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 34 H 0.11 -0.86 7.72 -2.39 -0.02 -0.88 16 35 H 0.14 -0.22 8.05 -2.91 -0.02 -0.24 16 36 H 0.14 -0.34 7.16 -2.91 -0.02 -0.36 16 37 H 0.16 -1.38 8.06 -2.91 -0.02 -1.41 16 38 H 0.16 -1.43 6.67 -2.91 -0.02 -1.45 16 39 H 0.11 -0.66 6.32 -2.39 -0.02 -0.68 16 40 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.18 -0.16 7.03 -2.91 -0.02 -0.18 16 42 H 0.15 -1.16 7.96 -2.38 -0.02 -1.18 16 43 H 0.39 -3.63 8.70 -74.06 -0.64 -4.27 16 44 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 45 H -0.28 -0.53 7.11 99.48 0.71 0.18 16 Total: 0.00 -20.51 391.95 2.69 -17.82 By element: Atomic # 1 Polarization: -15.67 SS G_CDS: -0.30 Total: -15.97 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 4.41 Total: 12.08 kcal Atomic # 7 Polarization: -1.50 SS G_CDS: -4.21 Total: -5.71 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -1.61 Total: -6.20 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 2.27 Total: -0.96 kcal Atomic # 14 Polarization: -3.19 SS G_CDS: 2.14 Total: -1.05 kcal Total: -20.51 2.69 -17.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_9705318_13259642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.077 kcal (2) G-P(sol) polarization free energy of solvation -20.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds