Wall clock time and date at job start Tue Mar 9 2021 14:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33699 * 122.40698 * 2 1 4 4 C 1.50701 * 125.02005 * 359.93798 * 3 2 1 5 5 O 1.42904 * 109.46987 * 315.24065 * 4 3 2 6 6 Si 1.86295 * 109.47169 * 195.24004 * 4 3 2 7 7 S 1.75828 * 109.96087 * 179.74977 * 3 2 1 8 8 C 1.75891 * 91.07010 * 0.29310 * 7 3 2 9 9 C 1.47055 * 125.33588 * 179.97438 * 8 7 3 10 10 N 1.31531 * 126.41772 * 179.73728 * 9 8 7 11 11 N 1.28658 * 109.22478 * 179.71892 * 10 9 8 12 12 C 1.30320 * 109.59088 * 0.41040 * 11 10 9 13 13 C 1.50700 * 126.16114 * 179.85301 * 12 11 10 14 14 H 1.08997 * 112.85332 * 190.88449 * 13 12 11 15 15 C 1.53781 * 113.61448 * 322.20167 * 13 12 11 16 16 C 1.53784 * 87.08394 * 139.97653 * 15 13 12 17 17 H 1.08998 * 113.69165 * 89.11967 * 16 15 13 18 18 N 1.46491 * 113.61695 * 220.01898 * 16 15 13 19 19 C 1.34786 * 119.99998 * 252.49643 * 18 16 15 20 20 O 1.21511 * 119.99367 * 359.97438 * 19 18 16 21 21 O 1.34638 * 119.99938 * 179.97438 * 19 18 16 22 22 C 1.45199 * 116.99363 * 180.02562 * 21 19 18 23 23 C 1.52993 * 109.47776 * 59.99697 * 22 21 19 24 24 C 1.52999 * 109.46904 * 299.99485 * 22 21 19 25 25 C 1.53000 * 109.46899 * 180.02562 * 22 21 19 26 26 C 1.53784 * 113.60877 * 59.69411 * 13 12 11 27 27 O 1.34544 * 107.67748 * 359.59884 * 12 11 10 28 28 C 1.36156 * 109.33320 * 359.70824 * 8 7 3 29 29 H 1.09001 * 109.46910 * 275.79487 * 1 2 3 30 30 H 1.09003 * 109.46447 * 35.79638 * 1 2 3 31 31 H 1.08998 * 109.47000 * 155.79320 * 1 2 3 32 32 H 1.08997 * 109.46937 * 75.24130 * 4 3 2 33 33 H 0.96701 * 113.99737 * 180.02562 * 5 4 3 34 34 H 1.48500 * 110.00326 * 298.68040 * 6 4 3 35 35 H 1.48500 * 110.00037 * 60.00070 * 6 4 3 36 36 H 1.08994 * 113.61941 * 25.42851 * 15 13 12 37 37 H 1.09002 * 113.60848 * 254.52199 * 15 13 12 38 38 H 0.96996 * 120.00440 * 72.49002 * 18 16 15 39 39 H 1.08998 * 109.47252 * 299.99935 * 23 22 21 40 40 H 1.09000 * 109.47366 * 179.97438 * 23 22 21 41 41 H 1.09007 * 109.46921 * 60.00145 * 23 22 21 42 42 H 1.09002 * 109.47200 * 180.02562 * 24 22 21 43 43 H 1.09004 * 109.47081 * 300.00206 * 24 22 21 44 44 H 1.08998 * 109.47560 * 60.00607 * 24 22 21 45 45 H 1.09009 * 109.47106 * 299.99976 * 25 22 21 46 46 H 1.09004 * 109.47603 * 59.99477 * 25 22 21 47 47 H 1.09000 * 109.47475 * 179.97438 * 25 22 21 48 48 H 1.09001 * 113.61429 * 105.46746 * 26 13 12 49 49 H 1.09000 * 113.69533 * 334.57761 * 26 13 12 50 50 H 1.08001 * 122.77602 * 180.19814 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1288 0.0000 4 6 1.6451 2.5203 -0.0013 5 8 0.5797 2.5924 -0.9510 6 14 2.9719 3.7440 -0.4625 7 16 3.9405 0.7498 0.0072 8 6 3.5936 -0.9745 0.0010 9 6 4.6019 -2.0449 0.0024 10 7 4.3669 -3.3391 0.0027 11 7 5.4864 -3.9730 -0.0019 12 6 6.4716 -3.1199 0.0036 13 6 7.9403 -3.4576 0.0040 14 1 8.5736 -2.5921 0.1987 15 6 8.2899 -4.6848 0.8622 16 6 9.2717 -5.0859 -0.2515 17 1 10.2702 -4.6671 -0.1268 18 7 9.2885 -6.5242 -0.5290 19 6 10.3429 -7.2719 -0.1472 20 8 11.2797 -6.7528 0.4268 21 8 10.3582 -8.5939 -0.4018 22 6 11.5256 -9.3365 0.0384 23 6 11.6691 -9.2085 1.5562 24 6 12.7749 -8.7725 -0.6413 25 6 11.3634 -10.8110 -0.3365 26 6 8.3829 -4.2828 -1.2159 27 8 5.9413 -1.8834 0.0031 28 6 2.2452 -1.1630 0.0006 29 1 -0.3633 0.1038 1.0224 30 1 -0.3632 0.8336 -0.6011 31 1 -0.3633 -0.9373 -0.4214 32 1 1.2630 2.7559 0.9919 33 1 0.1599 3.4618 -1.0060 34 1 4.0711 3.7015 0.5351 35 1 3.5012 3.4337 -1.8149 36 1 7.4612 -5.3819 0.9856 37 1 8.7774 -4.4341 1.8044 38 1 8.5408 -6.9385 -0.9874 39 1 11.7849 -8.1580 1.8230 40 1 12.5453 -9.7663 1.8868 41 1 10.7790 -9.6104 2.0405 42 1 13.6514 -9.3302 -0.3111 43 1 12.6728 -8.8638 -1.7227 44 1 12.8908 -7.7220 -0.3746 45 1 10.4732 -11.2131 0.1474 46 1 11.2615 -10.9019 -1.4179 47 1 12.2400 -11.3684 -0.0064 48 1 8.9452 -3.7076 -1.9514 49 1 7.5804 -4.8704 -1.6618 50 1 1.7918 -2.1433 0.0002 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_271722_14472206_10193972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:41:13 Heat of formation + Delta-G solvation = -10.684410 kcal Electronic energy + Delta-G solvation = -33274.083111 eV Core-core repulsion = 28591.072132 eV Total energy + Delta-G solvation = -4683.010979 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.144 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -45.46138 -41.94088 -40.46702 -39.97654 -38.01264 -37.58800 -37.47825 -35.48775 -34.55315 -33.73423 -31.20503 -30.10659 -28.38155 -28.32258 -27.68020 -26.98091 -26.44719 -24.90006 -24.32787 -23.17352 -22.79732 -21.45625 -20.74049 -19.97298 -19.24141 -19.16513 -18.70128 -18.56784 -18.22978 -17.55514 -17.21966 -17.13555 -16.88443 -16.40301 -16.02652 -15.65815 -15.41589 -15.15870 -15.04312 -14.93915 -14.60319 -14.52360 -14.42961 -14.15375 -13.85003 -13.65380 -13.42919 -13.39981 -13.32113 -13.25258 -13.13331 -12.98883 -12.94062 -12.88765 -12.82529 -12.69076 -12.60048 -12.43466 -12.34452 -12.22017 -12.15041 -12.01516 -12.00323 -11.41560 -11.19916 -11.14012 -10.42412 -10.26476 -9.78201 -9.51850 -5.24868 -1.13944 -0.04513 0.13480 0.38221 0.74796 0.95387 1.16133 1.16271 1.47633 1.55833 1.68915 1.87714 2.43767 2.98590 3.10626 3.24542 3.26682 3.34829 3.52603 3.59151 3.70058 3.72226 3.76149 3.78040 3.89034 3.92650 4.06469 4.21010 4.25522 4.36989 4.40402 4.49696 4.52858 4.55157 4.56219 4.59840 4.63308 4.70576 4.74643 4.74972 4.81693 4.83521 4.85779 4.87051 4.92357 4.96260 5.12443 5.25615 5.26708 5.27161 5.37983 5.48174 5.54894 6.33221 6.88748 6.90864 7.28435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.082 4.082 3 C -0.164 4.164 4 C -0.034 4.034 5 O -0.549 6.549 6 Si 0.754 3.246 7 S 0.130 5.870 8 C -0.164 4.164 9 C 0.235 3.765 10 N -0.289 5.289 11 N -0.299 5.299 12 C 0.190 3.810 13 C -0.020 4.020 14 H 0.155 0.845 15 C -0.134 4.134 16 C 0.149 3.851 17 H 0.130 0.870 18 N -0.691 5.691 19 C 0.646 3.354 20 O -0.590 6.590 21 O -0.371 6.371 22 C 0.127 3.873 23 C -0.180 4.180 24 C -0.180 4.180 25 C -0.139 4.139 26 C -0.119 4.119 27 O -0.227 6.227 28 C -0.050 4.050 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.409 0.591 34 H -0.268 1.268 35 H -0.288 1.288 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.417 0.583 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.099 0.901 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.679 5.779 -0.285 6.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.093 4.093 3 C -0.283 4.283 4 C -0.147 4.147 5 O -0.360 6.360 6 Si 0.659 3.341 7 S 0.396 5.604 8 C -0.282 4.282 9 C 0.027 3.973 10 N -0.137 5.137 11 N -0.144 5.144 12 C -0.020 4.020 13 C -0.040 4.040 14 H 0.173 0.827 15 C -0.173 4.173 16 C 0.045 3.955 17 H 0.147 0.853 18 N -0.350 5.350 19 C 0.400 3.600 20 O -0.480 6.480 21 O -0.285 6.285 22 C 0.091 3.909 23 C -0.237 4.237 24 C -0.237 4.237 25 C -0.196 4.196 26 C -0.158 4.158 27 O -0.107 6.107 28 C -0.085 4.085 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.262 0.738 34 H -0.195 1.195 35 H -0.215 1.215 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.254 0.746 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.117 0.883 48 H 0.131 0.869 49 H 0.116 0.884 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.422 5.169 -0.302 5.195 hybrid contribution -0.875 -0.528 0.066 1.024 sum -1.297 4.641 -0.236 4.825 Atomic orbital electron populations 1.20801 0.86542 1.04728 1.03900 1.18941 0.99609 0.89632 1.01107 1.24219 0.94541 0.99905 1.09597 1.24021 0.98450 0.94326 0.97868 1.86395 1.49453 1.39894 1.60291 0.94023 0.76928 0.85283 0.77916 1.84491 1.06200 0.97176 1.72543 1.21373 0.93442 0.93816 1.19579 1.24230 0.79639 0.93192 1.00287 1.74872 1.19462 1.01110 1.18263 1.74253 0.94111 1.27740 1.18331 1.28433 1.00044 0.76044 0.97513 1.21355 0.80849 1.00584 1.01258 0.82685 1.23646 0.99849 0.94732 0.99116 1.22385 1.00263 0.77489 0.95360 0.85252 1.44695 1.20184 1.08099 1.61998 1.18351 0.82930 0.81056 0.77659 1.90902 1.36863 1.73474 1.46811 1.86323 1.46723 1.19178 1.76306 1.22358 0.82215 0.91635 0.94726 1.22474 1.03307 1.03951 0.93994 1.22474 0.97260 1.03141 1.00798 1.21899 1.04187 0.90430 1.03053 1.23504 0.99494 0.96884 0.95897 1.84917 1.20465 1.34958 1.70361 1.20823 0.89724 1.01470 0.96479 0.89957 0.88101 0.90996 0.86381 0.73782 1.19454 1.21451 0.88847 0.88687 0.74625 0.91571 0.89442 0.92133 0.89475 0.91950 0.91533 0.91337 0.91203 0.88267 0.86902 0.88402 0.81734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.16 9.75 71.24 0.69 0.86 16 2 C -0.08 -0.25 5.75 -21.01 -0.12 -0.37 16 3 C -0.16 -0.44 5.80 24.66 0.14 -0.30 16 4 C -0.03 0.15 2.71 71.24 0.19 0.34 16 5 O -0.55 3.34 10.20 -148.98 -1.52 1.82 16 6 Si 0.75 -3.14 31.07 68.60 2.13 -1.01 16 7 S 0.13 0.79 20.68 -56.49 -1.17 -0.37 16 8 C -0.16 -1.40 6.46 24.10 0.16 -1.24 16 9 C 0.24 2.64 8.24 87.05 0.72 3.35 16 10 N -0.29 -3.89 12.23 -166.48 -2.04 -5.93 16 11 N -0.30 -3.28 11.82 -165.25 -1.95 -5.23 16 12 C 0.19 1.16 7.53 88.33 0.66 1.83 16 13 C -0.02 0.05 4.29 -11.01 -0.05 0.00 16 14 H 0.16 -1.13 8.14 -2.39 -0.02 -1.15 16 15 C -0.13 0.22 7.42 31.12 0.23 0.45 16 16 C 0.15 -0.35 4.24 45.52 0.19 -0.16 16 17 H 0.13 -0.24 7.46 -2.39 -0.02 -0.26 16 18 N -0.69 -0.38 5.36 -567.59 -3.04 -3.42 16 19 C 0.65 4.17 8.06 129.79 1.05 5.21 16 20 O -0.59 -6.39 11.48 19.81 0.23 -6.16 16 21 O -0.37 -2.23 9.94 -55.47 -0.55 -2.78 16 22 C 0.13 0.42 1.13 -10.80 -0.01 0.41 16 23 C -0.18 -0.64 8.37 71.98 0.60 -0.04 16 24 C -0.18 -0.56 8.37 71.98 0.60 0.04 16 25 C -0.14 0.18 8.85 71.98 0.64 0.82 16 26 C -0.12 0.55 7.38 31.12 0.23 0.78 16 27 O -0.23 -2.09 10.90 -10.94 -0.12 -2.21 16 28 C -0.05 -0.28 9.89 21.67 0.21 -0.06 16 29 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.10 -0.19 5.52 -2.39 -0.01 -0.20 16 31 H 0.07 -0.17 8.10 -2.39 -0.02 -0.19 16 32 H 0.12 -1.13 7.96 -2.39 -0.02 -1.15 16 33 H 0.41 -6.81 8.74 -74.06 -0.65 -7.45 16 34 H -0.27 -0.25 7.11 99.48 0.71 0.45 16 35 H -0.29 -1.23 7.11 99.48 0.71 -0.52 16 36 H 0.09 0.14 7.78 -2.39 -0.02 0.12 16 37 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.42 -1.02 8.84 -92.71 -0.82 -1.84 16 39 H 0.07 0.56 5.88 -2.39 -0.01 0.54 16 40 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 42 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 44 H 0.07 0.52 5.88 -2.39 -0.01 0.51 16 45 H 0.07 -0.08 8.14 -2.38 -0.02 -0.10 16 46 H 0.07 -0.10 8.14 -2.38 -0.02 -0.12 16 47 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 48 H 0.11 -0.89 8.14 -2.39 -0.02 -0.91 16 49 H 0.10 -0.30 8.07 -2.39 -0.02 -0.32 16 50 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 Total: 0.00 -23.85 423.98 -2.31 -26.16 By element: Atomic # 1 Polarization: -12.37 SS G_CDS: -0.43 Total: -12.79 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 6.14 Total: 11.92 kcal Atomic # 7 Polarization: -7.55 SS G_CDS: -7.03 Total: -14.58 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -1.96 Total: -9.32 kcal Atomic # 14 Polarization: -3.14 SS G_CDS: 2.13 Total: -1.01 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -1.17 Total: -0.37 kcal Total: -23.85 -2.31 -26.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_271722_14472206_10193972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.479 kcal (2) G-P(sol) polarization free energy of solvation -23.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds