Wall clock time and date at job start Tue Mar 9 2021 14:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33703 * 122.40843 * 2 1 4 4 C 1.50703 * 125.01886 * 0.04226 * 3 2 1 5 5 O 1.42905 * 109.46987 * 44.76510 * 4 3 2 6 6 Si 1.86294 * 109.47165 * 164.76468 * 4 3 2 7 7 S 1.75825 * 109.96448 * 180.02562 * 3 2 1 8 8 C 1.75900 * 91.06898 * 359.97438 * 7 3 2 9 9 C 1.47045 * 125.33514 * 180.02562 * 8 7 3 10 10 N 1.31534 * 126.41560 * 180.02562 * 9 8 7 11 11 N 1.28658 * 109.22671 * 179.97438 * 10 9 8 12 12 C 1.30319 * 109.58948 * 0.02562 * 11 10 9 13 13 C 1.50703 * 126.16087 * 180.02562 * 12 11 10 14 14 H 1.09003 * 112.84969 * 168.82308 * 13 12 11 15 15 C 1.53775 * 113.61334 * 300.02168 * 13 12 11 16 16 C 1.53780 * 87.08264 * 89.20130 * 15 13 12 17 17 H 1.08998 * 113.61185 * 270.79892 * 16 15 13 18 18 N 1.46501 * 113.61742 * 139.98250 * 16 15 13 19 19 C 1.34772 * 119.99941 * 156.25084 * 18 16 15 20 20 O 1.21505 * 120.00475 * 0.27411 * 19 18 16 21 21 O 1.34647 * 119.99632 * 180.27411 * 19 18 16 22 22 C 1.45202 * 116.99769 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47167 * 59.99971 * 22 21 19 24 24 C 1.53002 * 109.47015 * 179.97438 * 22 21 19 25 25 C 1.52996 * 109.47240 * 300.00132 * 22 21 19 26 26 C 1.53777 * 87.17541 * 25.38943 * 16 15 13 27 27 O 1.34545 * 107.67975 * 0.25917 * 12 11 10 28 28 C 1.36152 * 109.32959 * 0.26845 * 8 7 3 29 29 H 1.08997 * 109.47103 * 84.22379 * 1 2 3 30 30 H 1.08996 * 109.46921 * 204.22427 * 1 2 3 31 31 H 1.08997 * 109.46477 * 324.22630 * 1 2 3 32 32 H 1.09000 * 109.47137 * 284.76973 * 4 3 2 33 33 H 0.96701 * 114.00006 * 179.97438 * 5 4 3 34 34 H 1.48500 * 110.00446 * 300.00176 * 6 4 3 35 35 H 1.48507 * 110.00060 * 61.32064 * 6 4 3 36 36 H 1.09003 * 113.61879 * 334.64778 * 15 13 12 37 37 H 1.09005 * 113.61699 * 203.74605 * 15 13 12 38 38 H 0.96998 * 119.99666 * 336.52971 * 18 16 15 39 39 H 1.09006 * 109.46732 * 59.99843 * 23 22 21 40 40 H 1.08993 * 109.47434 * 179.97438 * 23 22 21 41 41 H 1.09005 * 109.47565 * 300.00256 * 23 22 21 42 42 H 1.09001 * 109.46300 * 60.00507 * 24 22 21 43 43 H 1.08998 * 109.46699 * 179.97438 * 24 22 21 44 44 H 1.08992 * 109.47471 * 300.00510 * 24 22 21 45 45 H 1.09002 * 109.47153 * 59.99851 * 25 22 21 46 46 H 1.08998 * 109.47730 * 179.97438 * 25 22 21 47 47 H 1.09004 * 109.47126 * 300.00426 * 25 22 21 48 48 H 1.09006 * 113.61387 * 89.15716 * 26 16 15 49 49 H 1.08993 * 113.61929 * 220.06573 * 26 16 15 50 50 H 1.08001 * 122.77703 * 179.73444 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1288 0.0000 4 6 1.6451 2.5204 0.0009 5 8 0.5795 2.5926 0.9504 6 14 2.9719 3.7441 0.4621 7 16 3.9405 0.7499 -0.0007 8 6 3.5936 -0.9745 -0.0002 9 6 4.6019 -2.0449 0.0000 10 7 4.3668 -3.3390 -0.0001 11 7 5.4864 -3.9730 -0.0003 12 6 6.4716 -3.1199 0.0002 13 6 7.9403 -3.4576 -0.0004 14 1 8.5736 -2.5920 -0.1945 15 6 8.3828 -4.2837 1.2188 16 6 8.0421 -5.5366 0.3948 17 1 7.0078 -5.8628 0.5037 18 7 9.0037 -6.6290 0.5628 19 6 8.6282 -7.9005 0.3209 20 8 7.4935 -8.1405 -0.0413 21 8 9.5105 -8.9050 0.4806 22 6 9.0369 -10.2490 0.2015 23 6 8.5753 -10.3349 -1.2546 24 6 10.1713 -11.2485 0.4362 25 6 7.8653 -10.5796 1.1283 26 6 8.2904 -4.6851 -0.8614 27 8 5.9413 -1.8834 0.0066 28 6 2.2452 -1.1630 -0.0056 29 1 -0.3633 0.1034 -1.0224 30 1 -0.3633 -0.9372 0.4217 31 1 -0.3632 0.8338 0.6008 32 1 1.2631 2.7557 -0.9925 33 1 0.1597 3.4620 1.0051 34 1 3.5009 3.4341 1.8146 35 1 4.0713 3.7014 -0.5353 36 1 7.7452 -4.1489 2.0925 37 1 9.4439 -4.1880 1.4492 38 1 9.9096 -6.4375 0.8520 39 1 9.4100 -10.0993 -1.9148 40 1 8.2202 -11.3438 -1.4643 41 1 7.7672 -9.6228 -1.4223 42 1 10.5004 -11.1873 1.4736 43 1 9.8156 -12.2573 0.2272 44 1 11.0057 -11.0128 -0.2242 45 1 7.0572 -9.8675 0.9606 46 1 7.5094 -11.5883 0.9185 47 1 8.1941 -10.5183 2.1657 48 1 9.3262 -4.6992 -1.2007 49 1 7.5782 -4.8736 -1.6646 50 1 1.7918 -2.1432 -0.0106 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_271722_14937844_10193972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:41:20 Heat of formation + Delta-G solvation = -8.398296 kcal Electronic energy + Delta-G solvation = -33711.072624 eV Core-core repulsion = 29028.160778 eV Total energy + Delta-G solvation = -4682.911846 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.144 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.50571 -41.94025 -40.50735 -39.98727 -38.01691 -37.60246 -37.49217 -35.50846 -34.53365 -33.71957 -31.09030 -30.11341 -28.40761 -28.32765 -27.56119 -26.98561 -26.58709 -24.91269 -24.39921 -23.27054 -22.88186 -21.44548 -20.79595 -19.96440 -19.24287 -19.15387 -18.73228 -18.46189 -18.18310 -17.57954 -17.22144 -17.16734 -16.70970 -16.63386 -16.02826 -15.73707 -15.43941 -15.16530 -14.96071 -14.82641 -14.62090 -14.53405 -14.50469 -14.08670 -13.86455 -13.68756 -13.45998 -13.40184 -13.32858 -13.26036 -13.15642 -13.09992 -12.99136 -12.94527 -12.89477 -12.65833 -12.59166 -12.44567 -12.33388 -12.21566 -12.12157 -12.07907 -11.72900 -11.42683 -11.26211 -11.14949 -10.43238 -10.25153 -9.79022 -9.53909 -5.24748 -1.15955 -0.05994 0.11198 0.36628 0.72361 0.93977 1.12606 1.15798 1.46561 1.55609 1.70568 1.87733 2.40966 2.97853 3.11424 3.21322 3.25774 3.29058 3.54016 3.65100 3.69394 3.71367 3.76582 3.80173 3.89306 3.91365 4.05386 4.22526 4.24540 4.37060 4.39829 4.50274 4.51801 4.57423 4.58065 4.62098 4.64942 4.69674 4.71541 4.72893 4.80602 4.82753 4.84957 4.85576 4.90684 4.94926 5.11778 5.23588 5.25489 5.26798 5.38315 5.46708 5.56354 6.38227 6.88541 6.89340 7.33017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.082 4.082 3 C -0.163 4.163 4 C -0.035 4.035 5 O -0.549 6.549 6 Si 0.756 3.244 7 S 0.135 5.865 8 C -0.166 4.166 9 C 0.238 3.762 10 N -0.292 5.292 11 N -0.300 5.300 12 C 0.189 3.811 13 C -0.023 4.023 14 H 0.157 0.843 15 C -0.111 4.111 16 C 0.129 3.871 17 H 0.096 0.904 18 N -0.685 5.685 19 C 0.641 3.359 20 O -0.595 6.595 21 O -0.366 6.366 22 C 0.127 3.873 23 C -0.180 4.180 24 C -0.136 4.136 25 C -0.181 4.181 26 C -0.125 4.125 27 O -0.223 6.223 28 C -0.051 4.051 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.409 0.591 34 H -0.287 1.287 35 H -0.267 1.267 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.422 0.578 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.062 0.938 48 H 0.139 0.861 49 H 0.062 0.938 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 7.827 -0.206 8.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.093 4.093 3 C -0.282 4.282 4 C -0.148 4.148 5 O -0.361 6.361 6 Si 0.660 3.340 7 S 0.401 5.599 8 C -0.283 4.283 9 C 0.029 3.971 10 N -0.140 5.140 11 N -0.146 5.146 12 C -0.021 4.021 13 C -0.043 4.043 14 H 0.175 0.825 15 C -0.150 4.150 16 C 0.025 3.975 17 H 0.114 0.886 18 N -0.345 5.345 19 C 0.394 3.606 20 O -0.486 6.486 21 O -0.281 6.281 22 C 0.091 3.909 23 C -0.237 4.237 24 C -0.193 4.193 25 C -0.238 4.238 26 C -0.164 4.164 27 O -0.103 6.103 28 C -0.086 4.086 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.262 0.738 34 H -0.214 1.214 35 H -0.193 1.193 36 H 0.094 0.906 37 H 0.170 0.830 38 H 0.260 0.740 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.157 0.843 49 H 0.081 0.919 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.732 6.834 -0.076 7.787 hybrid contribution -0.643 -0.461 -0.098 0.797 sum 3.089 6.372 -0.174 7.084 Atomic orbital electron populations 1.20799 0.86568 1.04697 1.03914 1.18929 0.99601 0.89615 1.01200 1.24237 0.94599 0.99903 1.09438 1.24052 0.98523 0.94311 0.97897 1.86397 1.49469 1.39907 1.60305 0.94002 0.76841 0.85215 0.77954 1.84434 1.06089 0.96872 1.72471 1.21371 0.93361 0.93922 1.19656 1.24258 0.79641 0.93156 1.00039 1.74896 1.19569 1.01233 1.18352 1.74355 0.94309 1.27859 1.18076 1.28191 0.99969 0.76154 0.97809 1.20740 0.80813 1.01490 1.01281 0.82504 1.23517 1.05531 0.90536 0.95389 1.22728 0.93682 0.84111 0.97015 0.88566 1.44630 1.16676 1.01985 1.71209 1.18472 0.82756 0.82685 0.76641 1.90940 1.21087 1.83992 1.52535 1.86308 1.42457 1.16901 1.82420 1.22346 0.95900 0.77066 0.95582 1.22470 1.02385 1.04158 0.94716 1.21881 0.96607 0.97296 1.03528 1.22479 0.98370 1.03640 0.99342 1.23648 1.04803 0.91086 0.96839 1.84890 1.20396 1.34559 1.70445 1.20821 0.89803 1.01459 0.96480 0.89943 0.91116 0.88024 0.86361 0.73774 1.21397 1.19321 0.90591 0.83040 0.73955 0.91685 0.89533 0.92136 0.91091 0.88389 0.90949 0.92189 0.89475 0.91859 0.84278 0.91920 0.81969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.07 9.75 71.24 0.69 0.77 16 2 C -0.08 -0.32 5.75 -21.01 -0.12 -0.44 16 3 C -0.16 -0.52 5.80 24.66 0.14 -0.38 16 4 C -0.04 0.15 2.71 71.24 0.19 0.34 16 5 O -0.55 3.14 10.20 -148.98 -1.52 1.62 16 6 Si 0.76 -3.16 31.06 68.60 2.13 -1.02 16 7 S 0.13 0.87 20.67 -56.49 -1.17 -0.30 16 8 C -0.17 -1.57 6.46 24.10 0.16 -1.42 16 9 C 0.24 3.00 8.24 87.05 0.72 3.72 16 10 N -0.29 -4.69 12.23 -166.49 -2.04 -6.73 16 11 N -0.30 -4.26 10.93 -165.24 -1.81 -6.06 16 12 C 0.19 1.45 7.41 88.33 0.65 2.11 16 13 C -0.02 0.06 4.49 -10.95 -0.05 0.01 16 14 H 0.16 -1.42 8.14 -2.39 -0.02 -1.44 16 15 C -0.11 0.55 7.41 31.12 0.23 0.78 16 16 C 0.13 0.23 3.83 45.52 0.17 0.40 16 17 H 0.10 1.03 6.59 -2.39 -0.02 1.01 16 18 N -0.68 -0.70 5.37 -567.61 -3.05 -3.75 16 19 C 0.64 5.62 8.06 129.79 1.05 6.66 16 20 O -0.59 -9.52 11.50 19.83 0.23 -9.30 16 21 O -0.37 -2.43 9.94 -55.56 -0.55 -2.98 16 22 C 0.13 0.59 1.13 -10.79 -0.01 0.58 16 23 C -0.18 -0.94 8.37 71.98 0.60 -0.34 16 24 C -0.14 0.16 8.85 71.98 0.64 0.80 16 25 C -0.18 -1.04 8.37 71.98 0.60 -0.43 16 26 C -0.12 0.21 7.40 31.18 0.23 0.44 16 27 O -0.22 -2.23 10.90 -10.96 -0.12 -2.35 16 28 C -0.05 -0.34 9.89 21.67 0.21 -0.13 16 29 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.07 -0.08 8.10 -2.39 -0.02 -0.10 16 31 H 0.10 -0.12 5.52 -2.39 -0.01 -0.13 16 32 H 0.12 -1.11 7.96 -2.39 -0.02 -1.12 16 33 H 0.41 -6.69 8.74 -74.06 -0.65 -7.33 16 34 H -0.29 -1.21 7.11 99.48 0.71 -0.50 16 35 H -0.27 -0.20 7.11 99.48 0.71 0.51 16 36 H 0.08 -0.15 8.09 -2.39 -0.02 -0.17 16 37 H 0.15 -1.93 8.11 -2.38 -0.02 -1.95 16 38 H 0.42 -2.47 8.82 -92.71 -0.82 -3.29 16 39 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 40 H 0.09 0.15 8.14 -2.39 -0.02 0.14 16 41 H 0.06 0.69 5.88 -2.38 -0.01 0.68 16 42 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.06 0.72 5.88 -2.39 -0.01 0.71 16 46 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 47 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 48 H 0.14 -1.10 8.14 -2.38 -0.02 -1.12 16 49 H 0.06 0.24 8.10 -2.39 -0.02 0.22 16 50 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 Total: 0.00 -28.55 422.22 -2.20 -30.75 By element: Atomic # 1 Polarization: -12.92 SS G_CDS: -0.42 Total: -13.34 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 6.11 Total: 13.46 kcal Atomic # 7 Polarization: -9.65 SS G_CDS: -6.89 Total: -16.54 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -1.96 Total: -13.01 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: 2.13 Total: -1.02 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -1.17 Total: -0.30 kcal Total: -28.55 -2.20 -30.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_271722_14937844_10193972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.349 kcal (2) G-P(sol) polarization free energy of solvation -28.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds