Wall clock time and date at job start Tue Mar 9 2021 13:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86307 * 109.47326 * 2 1 4 4 C 1.86302 * 109.47276 * 240.00235 * 2 1 3 5 5 C 1.90000 * 109.47208 * 119.99894 * 2 1 3 6 6 C 3.07403 * 109.47130 * 119.99859 * 2 1 3 7 7 C 4.50598 * 109.47159 * 119.99967 * 2 1 3 8 8 C 1.33584 * 124.38745 * 240.04034 * 7 6 5 9 9 C 1.44680 * 114.56470 * 180.02562 * 8 7 6 10 10 C 1.41835 * 130.32914 * 180.02562 * 9 8 7 11 11 O 1.35430 * 120.52373 * 359.93840 * 10 9 8 12 12 C 1.35910 * 118.00082 * 185.65462 * 11 10 9 13 13 C 1.38690 * 120.06030 * 262.59338 * 12 11 10 14 14 C 1.38185 * 119.95796 * 179.97438 * 13 12 11 15 15 C 1.38236 * 120.07706 * 0.02562 * 14 13 12 16 16 C 1.38293 * 120.12712 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.98212 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47037 * 254.98070 * 17 16 15 19 19 Si 1.86296 * 109.46843 * 14.97909 * 17 16 15 20 20 H 1.48501 * 109.47245 * 60.00132 * 19 17 16 21 21 H 1.48502 * 109.46977 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47681 * 299.99831 * 19 17 16 23 23 C 1.38216 * 120.04078 * 0.02562 * 16 15 14 24 24 Cl 1.73603 * 120.03863 * 180.02562 * 23 16 15 25 25 N 1.32309 * 118.95683 * 180.21277 * 10 9 8 26 26 C 1.32082 * 121.21957 * 359.55276 * 25 10 9 27 27 N 1.31329 * 122.21244 * 0.42644 * 26 25 10 28 28 C 1.33811 * 121.03922 * 359.81210 * 27 26 25 29 29 S 1.75336 * 124.39322 * 60.04138 * 7 6 5 30 30 H 1.08998 * 109.47284 * 300.00256 * 1 2 3 31 31 H 1.09004 * 109.46683 * 59.99892 * 1 2 3 32 32 H 1.08994 * 109.47046 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47104 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47198 * 300.00032 * 3 2 1 35 35 H 1.09005 * 109.46759 * 59.99818 * 3 2 1 36 36 H 1.08999 * 109.46804 * 299.99914 * 4 2 1 37 37 H 1.08996 * 109.47173 * 60.00014 * 4 2 1 38 38 H 1.08999 * 109.47407 * 180.02562 * 4 2 1 39 39 H 1.08001 * 122.71259 * 0.02562 * 8 7 6 40 40 H 1.08007 * 120.02470 * 359.95816 * 13 12 11 41 41 H 1.08003 * 119.96177 * 179.71867 * 14 13 12 42 42 H 1.08003 * 119.94016 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.47048 * 134.97738 * 17 16 15 44 44 H 0.96699 * 114.00123 * 60.00371 * 18 17 16 45 45 H 1.08002 * 118.89596 * 180.20969 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4963 -0.8956 1.5514 6 6 2.8876 -1.4491 2.5100 7 6 3.3650 -2.1241 3.6791 8 6 3.6157 -1.5252 4.8466 9 6 4.0917 -2.4109 5.8869 10 6 4.4538 -2.1374 7.2307 11 8 4.3800 -0.8767 7.7199 12 6 4.8490 -0.6511 8.9754 13 6 3.9724 -0.6222 10.0498 14 6 4.4516 -0.3931 11.3255 15 6 5.8036 -0.1922 11.5319 16 6 6.6807 -0.2203 10.4631 17 6 8.1541 -0.0015 10.6920 18 8 8.5145 1.3101 10.2540 19 14 8.5330 -0.1759 12.5077 20 1 8.1584 -1.5389 12.9629 21 1 9.9847 0.0404 12.7334 22 1 7.7579 0.8324 13.2743 23 6 6.2069 -0.4490 9.1850 24 17 7.3081 -0.4850 7.8434 25 7 4.8700 -3.1323 7.9971 26 6 4.9441 -4.3675 7.5353 27 7 4.6202 -4.6737 6.2999 28 6 4.1923 -3.7362 5.4463 29 16 3.6961 -3.8438 3.7640 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.5740 1.7565 -0.0005 34 1 2.1207 2.2703 -0.8899 35 1 2.1206 2.2703 0.8900 36 1 2.1207 -1.9058 -1.5212 37 1 2.1207 -0.3643 -2.4111 38 1 3.5740 -0.8786 -1.5210 39 1 3.4746 -0.4657 5.0012 40 1 2.9158 -0.7783 9.8895 41 1 3.7684 -0.3661 12.1615 42 1 6.1757 -0.0130 12.5299 43 1 8.7230 -0.7416 10.1294 44 1 8.0459 2.0206 10.7129 45 1 5.2858 -5.1517 8.1947 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_10544590_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:20 Heat of formation + Delta-G solvation = 35.941682 kcal Electronic energy + Delta-G solvation = -30766.161964 eV Core-core repulsion = 26412.740158 eV Total energy + Delta-G solvation = -4353.421807 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 418.049 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.67023 -41.29349 -39.64943 -37.74087 -37.54132 -37.49613 -34.44446 -33.88181 -32.69808 -31.61068 -30.34437 -29.64123 -28.49153 -28.48896 -27.08914 -26.58368 -25.84127 -23.96479 -23.11278 -22.80826 -20.94226 -20.20717 -18.84262 -18.23225 -17.99596 -17.45243 -17.41335 -16.90672 -16.79430 -16.46427 -16.17740 -15.79702 -15.59079 -15.43934 -15.28874 -14.75282 -14.62648 -14.33562 -14.27235 -14.16939 -14.10887 -14.06025 -13.86993 -13.43860 -13.38323 -13.37516 -13.24842 -13.16510 -12.65536 -12.60105 -12.39482 -12.34881 -12.25008 -12.19945 -12.11458 -11.89459 -11.74091 -11.63252 -11.31523 -10.91160 -10.78335 -10.58582 -10.52360 -10.15178 -9.88976 -9.85211 -9.16677 -0.92637 -0.39668 -0.23412 -0.20128 -0.13957 0.50377 0.60473 0.98998 1.00184 1.29677 1.40875 1.42921 1.50701 1.54083 1.63544 1.81800 2.27114 2.33474 2.36472 2.47546 2.61670 2.79474 3.09947 3.24321 3.27416 3.44879 3.46786 3.65536 3.79766 3.82802 4.01704 4.07361 4.27077 4.32496 4.54790 4.64316 4.64382 4.67517 4.68738 4.68961 4.69136 4.71135 4.77399 4.83431 4.83795 4.92808 5.04747 5.31625 5.38562 5.48125 5.48413 5.53537 6.02072 6.46030 6.49562 6.83352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.146 2.854 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.355 4.355 6 C -0.127 4.127 7 C -0.084 4.084 8 C -0.061 4.061 9 C -0.186 4.186 10 C 0.421 3.579 11 O -0.227 6.227 12 C 0.093 3.907 13 C -0.091 4.091 14 C -0.095 4.095 15 C -0.107 4.107 16 C -0.102 4.102 17 C -0.085 4.085 18 O -0.527 6.527 19 Si 0.952 3.048 20 H -0.245 1.245 21 H -0.248 1.248 22 H -0.248 1.248 23 C -0.008 4.008 24 Cl -0.038 7.038 25 N -0.565 5.565 26 C 0.357 3.643 27 N -0.505 5.505 28 C 0.108 3.892 29 S 0.220 5.780 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.160 0.840 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.121 0.879 44 H 0.376 0.624 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 2.028 1.063 3.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.331 2.669 3 C -0.561 4.561 4 C -0.561 4.561 5 C -0.393 4.393 6 C -0.129 4.129 7 C -0.199 4.199 8 C -0.091 4.091 9 C -0.200 4.200 10 C 0.228 3.772 11 O -0.129 6.129 12 C 0.050 3.950 13 C -0.110 4.110 14 C -0.113 4.113 15 C -0.125 4.125 16 C -0.103 4.103 17 C -0.195 4.195 18 O -0.332 6.332 19 Si 0.774 3.226 20 H -0.168 1.168 21 H -0.171 1.171 22 H -0.172 1.172 23 C -0.036 4.036 24 Cl -0.009 7.009 25 N -0.296 5.296 26 C 0.066 3.934 27 N -0.225 5.225 28 C -0.143 4.143 29 S 0.485 5.515 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.178 0.822 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.138 0.862 44 H 0.223 0.777 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.929 -0.155 0.923 2.144 hybrid contribution -0.400 1.766 0.765 1.966 sum -2.329 1.611 1.688 3.297 Atomic orbital electron populations 1.26116 1.19797 1.05082 1.05073 0.77081 0.66101 0.64717 0.59008 1.26115 1.06805 1.18085 1.05070 1.26116 1.06810 1.08483 1.14683 1.36289 0.99653 0.99687 1.03660 1.19516 0.99962 0.99333 0.94110 1.19528 1.08799 0.97215 0.94351 1.20872 0.98140 1.00851 0.89256 1.19494 1.11948 0.95053 0.93523 1.20047 0.85940 0.84344 0.86912 1.84659 1.75623 1.23326 1.29285 1.18262 0.90270 1.03194 0.83315 1.21268 1.00319 0.98476 0.90945 1.21089 0.95377 0.98184 0.96626 1.21254 0.93630 0.99070 0.98528 1.20163 0.97526 1.01511 0.91150 1.25094 0.91769 0.88971 1.13669 1.86597 1.66992 1.13525 1.66085 0.85662 0.81691 0.81952 0.73333 1.16838 1.17144 1.17223 1.21060 0.89566 1.02872 0.90053 1.98414 1.61995 1.96335 1.44106 1.68048 1.22062 1.01683 1.37810 1.24797 0.88825 0.90843 0.88975 1.68098 1.15739 1.34660 1.03958 1.23937 0.98809 0.90772 1.00747 1.84541 1.65259 1.02010 0.99738 0.90818 0.90256 0.90815 0.90806 0.90264 0.90816 0.90814 0.90232 0.90799 0.82249 0.83983 0.83822 0.84358 0.86164 0.77728 0.77144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.15 8.65 101.05 0.87 2.02 16 2 Si 1.15 -3.53 14.26 -169.99 -2.42 -5.95 16 3 C -0.45 1.11 8.65 101.05 0.87 1.98 16 4 C -0.45 1.12 8.65 101.05 0.87 2.00 16 5 C -0.35 -0.43 12.14 29.55 0.36 -0.07 16 6 C -0.13 -0.42 13.64 -38.84 -0.53 -0.94 16 7 C -0.08 -0.28 6.15 -39.29 -0.24 -0.52 16 8 C -0.06 -0.18 10.19 -38.67 -0.39 -0.58 16 9 C -0.19 -0.71 6.08 -105.31 -0.64 -1.35 16 10 C 0.42 1.56 7.25 -15.97 -0.12 1.45 16 11 O -0.23 -0.76 9.46 -2.21 -0.02 -0.78 16 12 C 0.09 0.21 5.00 -39.18 -0.20 0.02 16 13 C -0.09 -0.01 9.99 -39.43 -0.39 -0.40 16 14 C -0.09 0.14 10.04 -39.60 -0.40 -0.25 16 15 C -0.11 0.12 8.66 -39.56 -0.34 -0.22 16 16 C -0.10 -0.05 5.26 -104.61 -0.55 -0.60 16 17 C -0.08 0.01 2.09 36.01 0.08 0.09 16 18 O -0.53 -0.16 12.83 -35.23 -0.45 -0.61 16 19 Si 0.95 -1.26 25.49 -169.99 -4.33 -5.59 16 20 H -0.25 0.18 7.11 56.52 0.40 0.59 16 21 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 22 H -0.25 0.51 6.73 56.52 0.38 0.90 16 23 C -0.01 -0.02 6.32 -39.35 -0.25 -0.27 16 24 Cl -0.04 -0.14 26.86 -51.86 -1.39 -1.53 16 25 N -0.57 -1.78 9.43 -14.16 -0.13 -1.91 16 26 C 0.36 0.72 12.26 -92.30 -1.13 -0.41 16 27 N -0.50 -1.89 10.47 -13.27 -0.14 -2.03 16 28 C 0.11 0.43 7.69 -16.02 -0.12 0.31 16 29 S 0.22 0.60 23.16 -107.50 -2.49 -1.89 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 32 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 35 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 36 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 37 H 0.08 -0.25 7.96 -51.93 -0.41 -0.67 16 38 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 39 H 0.16 0.25 8.06 -52.49 -0.42 -0.17 16 40 H 0.14 -0.19 8.06 -52.48 -0.42 -0.61 16 41 H 0.14 -0.59 8.06 -52.48 -0.42 -1.02 16 42 H 0.14 -0.41 4.88 -52.48 -0.26 -0.67 16 43 H 0.12 0.02 7.41 -51.93 -0.38 -0.36 16 44 H 0.38 -1.24 8.70 45.56 0.40 -0.84 16 45 H 0.21 -0.37 8.06 -52.49 -0.42 -0.80 16 LS Contribution 426.49 15.07 6.43 6.43 Total: 0.00 -8.02 426.49 -11.68 -19.69 By element: Atomic # 1 Polarization: -3.59 SS G_CDS: -4.47 Total: -8.06 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.25 Total: 2.23 kcal Atomic # 7 Polarization: -3.67 SS G_CDS: -0.27 Total: -3.94 kcal Atomic # 8 Polarization: -0.92 SS G_CDS: -0.47 Total: -1.39 kcal Atomic # 14 Polarization: -4.79 SS G_CDS: -6.76 Total: -11.54 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.49 Total: -1.89 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.39 Total: -1.53 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -8.02 -11.68 -19.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_10544590_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.636 kcal (2) G-P(sol) polarization free energy of solvation -8.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds