Wall clock time and date at job start Tue Mar 9 2021 13:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86307 * 109.47326 * 2 1 4 4 C 1.86302 * 109.47276 * 240.00235 * 2 1 3 5 5 C 1.90000 * 109.47208 * 119.99894 * 2 1 3 6 6 C 3.07403 * 109.47130 * 119.99859 * 2 1 3 7 7 C 4.50598 * 109.47159 * 119.99967 * 2 1 3 8 8 C 1.33584 * 124.38745 * 240.04034 * 7 6 5 9 9 C 1.44680 * 114.56470 * 180.02562 * 8 7 6 10 10 C 1.41835 * 130.32914 * 180.02562 * 9 8 7 11 11 O 1.35430 * 120.52373 * 359.93840 * 10 9 8 12 12 C 1.35910 * 118.00082 * 185.65462 * 11 10 9 13 13 C 1.38690 * 120.06030 * 262.59338 * 12 11 10 14 14 C 1.38185 * 119.95796 * 179.97438 * 13 12 11 15 15 C 1.38236 * 120.07706 * 0.02562 * 14 13 12 16 16 C 1.38293 * 120.12712 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.98212 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47037 * 254.98070 * 17 16 15 19 19 Si 1.86296 * 109.46843 * 14.97909 * 17 16 15 20 20 H 1.48501 * 109.47245 * 60.00132 * 19 17 16 21 21 H 1.48502 * 109.46977 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47681 * 299.99831 * 19 17 16 23 23 C 1.38216 * 120.04078 * 0.02562 * 16 15 14 24 24 Cl 1.73603 * 120.03863 * 180.02562 * 23 16 15 25 25 N 1.32309 * 118.95683 * 180.21277 * 10 9 8 26 26 C 1.32082 * 121.21957 * 359.55276 * 25 10 9 27 27 N 1.31329 * 122.21244 * 0.42644 * 26 25 10 28 28 C 1.33811 * 121.03922 * 359.81210 * 27 26 25 29 29 S 1.75336 * 124.39322 * 60.04138 * 7 6 5 30 30 H 1.08998 * 109.47284 * 300.00256 * 1 2 3 31 31 H 1.09004 * 109.46683 * 59.99892 * 1 2 3 32 32 H 1.08994 * 109.47046 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47104 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47198 * 300.00032 * 3 2 1 35 35 H 1.09005 * 109.46759 * 59.99818 * 3 2 1 36 36 H 1.08999 * 109.46804 * 299.99914 * 4 2 1 37 37 H 1.08996 * 109.47173 * 60.00014 * 4 2 1 38 38 H 1.08999 * 109.47407 * 180.02562 * 4 2 1 39 39 H 1.08001 * 122.71259 * 0.02562 * 8 7 6 40 40 H 1.08007 * 120.02470 * 359.95816 * 13 12 11 41 41 H 1.08003 * 119.96177 * 179.71867 * 14 13 12 42 42 H 1.08003 * 119.94016 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.47048 * 134.97738 * 17 16 15 44 44 H 0.96699 * 114.00123 * 60.00371 * 18 17 16 45 45 H 1.08002 * 118.89596 * 180.20969 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4963 -0.8956 1.5514 6 6 2.8876 -1.4491 2.5100 7 6 3.3650 -2.1241 3.6791 8 6 3.6157 -1.5252 4.8466 9 6 4.0917 -2.4109 5.8869 10 6 4.4538 -2.1374 7.2307 11 8 4.3800 -0.8767 7.7199 12 6 4.8490 -0.6511 8.9754 13 6 3.9724 -0.6222 10.0498 14 6 4.4516 -0.3931 11.3255 15 6 5.8036 -0.1922 11.5319 16 6 6.6807 -0.2203 10.4631 17 6 8.1541 -0.0015 10.6920 18 8 8.5145 1.3101 10.2540 19 14 8.5330 -0.1759 12.5077 20 1 8.1584 -1.5389 12.9629 21 1 9.9847 0.0404 12.7334 22 1 7.7579 0.8324 13.2743 23 6 6.2069 -0.4490 9.1850 24 17 7.3081 -0.4850 7.8434 25 7 4.8700 -3.1323 7.9971 26 6 4.9441 -4.3675 7.5353 27 7 4.6202 -4.6737 6.2999 28 6 4.1923 -3.7362 5.4463 29 16 3.6961 -3.8438 3.7640 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.5740 1.7565 -0.0005 34 1 2.1207 2.2703 -0.8899 35 1 2.1206 2.2703 0.8900 36 1 2.1207 -1.9058 -1.5212 37 1 2.1207 -0.3643 -2.4111 38 1 3.5740 -0.8786 -1.5210 39 1 3.4746 -0.4657 5.0012 40 1 2.9158 -0.7783 9.8895 41 1 3.7684 -0.3661 12.1615 42 1 6.1757 -0.0130 12.5299 43 1 8.7230 -0.7416 10.1294 44 1 8.0459 2.0206 10.7129 45 1 5.2858 -5.1517 8.1947 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_10544590_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:19 Heat of formation + Delta-G solvation = 43.367056 kcal Electronic energy + Delta-G solvation = -30765.839976 eV Core-core repulsion = 26412.740158 eV Total energy + Delta-G solvation = -4353.099818 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 418.049 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.83768 -41.38241 -39.71987 -37.93311 -37.66802 -37.50211 -34.63338 -34.04630 -32.68493 -31.65129 -30.49789 -29.44055 -28.27684 -28.27279 -27.06393 -26.76711 -26.01485 -24.00970 -23.20258 -22.91399 -21.10291 -20.33871 -18.84256 -18.36416 -18.05037 -17.59656 -17.46826 -17.07629 -16.89891 -16.55435 -16.20952 -15.84282 -15.61201 -15.47497 -15.35522 -14.75124 -14.67484 -14.44216 -14.24377 -14.13949 -14.11680 -13.86760 -13.81802 -13.40847 -13.26466 -13.16118 -13.14169 -12.97069 -12.81419 -12.73136 -12.48975 -12.38485 -12.36176 -12.15120 -12.12009 -11.92965 -11.71982 -11.71918 -11.42319 -10.80712 -10.77781 -10.67129 -10.49812 -10.15061 -10.04633 -9.92747 -9.37536 -1.12419 -0.51985 -0.43065 -0.35163 -0.12638 0.29888 0.41735 0.88265 1.07852 1.38748 1.42294 1.48400 1.53772 1.60664 1.71293 1.91524 2.29796 2.34199 2.37903 2.44858 2.54297 2.65427 2.96958 3.08662 3.23206 3.30755 3.55861 3.66493 3.77169 3.84558 4.00700 4.10024 4.19961 4.31366 4.47762 4.59687 4.63099 4.75685 4.85275 4.85473 4.85859 4.88413 4.91085 4.91296 4.93634 4.95615 5.10276 5.31252 5.41407 5.60732 5.70141 5.70608 5.88748 6.33315 6.64003 6.67552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.207 2.793 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.341 4.341 6 C -0.179 4.179 7 C -0.090 4.090 8 C -0.067 4.067 9 C -0.199 4.199 10 C 0.417 3.583 11 O -0.235 6.235 12 C 0.070 3.930 13 C -0.096 4.096 14 C -0.084 4.084 15 C -0.103 4.103 16 C -0.106 4.106 17 C -0.093 4.093 18 O -0.545 6.545 19 Si 0.992 3.008 20 H -0.250 1.250 21 H -0.275 1.275 22 H -0.226 1.226 23 C -0.026 4.026 24 Cl -0.062 7.062 25 N -0.570 5.570 26 C 0.356 3.644 27 N -0.521 5.521 28 C 0.094 3.906 29 S 0.229 5.771 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.178 0.822 42 H 0.163 0.837 43 H 0.107 0.893 44 H 0.390 0.610 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 2.648 2.189 5.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.388 2.612 3 C -0.571 4.571 4 C -0.571 4.571 5 C -0.375 4.375 6 C -0.181 4.181 7 C -0.206 4.206 8 C -0.097 4.097 9 C -0.213 4.213 10 C 0.223 3.777 11 O -0.136 6.136 12 C 0.027 3.973 13 C -0.114 4.114 14 C -0.101 4.101 15 C -0.121 4.121 16 C -0.108 4.108 17 C -0.202 4.202 18 O -0.352 6.352 19 Si 0.812 3.188 20 H -0.174 1.174 21 H -0.200 1.200 22 H -0.149 1.149 23 C -0.054 4.054 24 Cl -0.033 7.033 25 N -0.301 5.301 26 C 0.066 3.934 27 N -0.241 5.241 28 C -0.156 4.156 29 S 0.493 5.507 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.184 0.816 40 H 0.172 0.828 41 H 0.195 0.805 42 H 0.180 0.820 43 H 0.125 0.875 44 H 0.239 0.761 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -2.954 0.471 2.071 3.638 hybrid contribution -0.088 1.617 0.412 1.671 sum -3.042 2.088 2.484 4.448 Atomic orbital electron populations 1.26219 1.20151 1.05080 1.05531 0.76340 0.65044 0.63256 0.56578 1.26237 1.06628 1.18721 1.05521 1.26233 1.06663 1.08632 1.15574 1.37773 0.97834 0.98300 1.03632 1.19965 1.01846 1.01065 0.95198 1.19680 1.08734 0.97493 0.94656 1.20962 0.98375 1.01182 0.89195 1.19623 1.12522 0.95247 0.93940 1.20184 0.85795 0.84745 0.86997 1.84648 1.75597 1.23174 1.30202 1.18583 0.90724 1.04516 0.83446 1.21520 1.00658 0.98232 0.91032 1.21498 0.95740 0.96107 0.96783 1.21563 0.93624 0.97922 0.98950 1.20352 0.98148 1.01366 0.90895 1.25299 0.91308 0.88543 1.15041 1.86559 1.67515 1.14233 1.66939 0.85119 0.80033 0.81995 0.71605 1.17391 1.20011 1.14877 1.21243 0.89365 1.04661 0.90123 1.98396 1.62794 1.96594 1.45501 1.68119 1.22207 1.01910 1.37825 1.25519 0.87722 0.91290 0.88903 1.68149 1.16544 1.34805 1.04613 1.24144 0.99128 0.91078 1.01289 1.84359 1.65111 1.01951 0.99282 0.91091 0.89089 0.91073 0.91239 0.89110 0.91092 0.91044 0.89071 0.91187 0.81591 0.82847 0.80480 0.81981 0.87464 0.76064 0.73855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.64 8.65 113.37 0.98 3.62 16 2 Si 1.21 -7.87 14.26 68.60 0.98 -6.89 16 3 C -0.46 2.47 8.65 113.37 0.98 3.45 16 4 C -0.46 2.54 8.65 113.37 0.98 3.52 16 5 C -0.34 -1.12 12.14 74.32 0.90 -0.22 16 6 C -0.18 -1.48 13.64 30.01 0.41 -1.07 16 7 C -0.09 -0.80 6.15 22.46 0.14 -0.66 16 8 C -0.07 -0.57 10.19 22.86 0.23 -0.34 16 9 C -0.20 -1.96 6.08 -20.31 -0.12 -2.08 16 10 C 0.42 3.84 7.25 85.51 0.62 4.46 16 11 O -0.23 -1.99 9.46 -30.82 -0.29 -2.28 16 12 C 0.07 0.38 5.00 22.53 0.11 0.49 16 13 C -0.10 0.03 9.99 22.37 0.22 0.26 16 14 C -0.08 0.42 10.04 22.26 0.22 0.65 16 15 C -0.10 0.41 8.66 22.28 0.19 0.60 16 16 C -0.11 -0.11 5.26 -19.86 -0.10 -0.21 16 17 C -0.09 -0.01 2.09 71.24 0.15 0.14 16 18 O -0.55 -0.70 12.83 -148.98 -1.91 -2.61 16 19 Si 0.99 -3.52 25.49 68.60 1.75 -1.77 16 20 H -0.25 0.69 7.11 99.48 0.71 1.39 16 21 H -0.27 -0.24 7.11 99.48 0.71 0.47 16 22 H -0.23 1.61 6.73 99.48 0.67 2.28 16 23 C -0.03 -0.16 6.32 22.42 0.14 -0.01 16 24 Cl -0.06 -0.58 26.86 -2.72 -0.07 -0.65 16 25 N -0.57 -4.22 9.43 -311.68 -2.94 -7.16 16 26 C 0.36 1.73 12.26 180.94 2.22 3.95 16 27 N -0.52 -4.60 10.47 -195.88 -2.05 -6.65 16 28 C 0.09 0.93 7.69 84.82 0.65 1.58 16 29 S 0.23 1.71 23.16 -56.49 -1.31 0.40 16 30 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 31 H 0.09 -0.70 7.96 -2.38 -0.02 -0.72 16 32 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 33 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H 0.09 -0.67 7.96 -2.39 -0.02 -0.69 16 35 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 36 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 37 H 0.09 -0.69 7.96 -2.39 -0.02 -0.71 16 38 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 39 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 40 H 0.15 -0.50 8.06 -2.91 -0.02 -0.52 16 41 H 0.18 -2.10 8.06 -2.91 -0.02 -2.12 16 42 H 0.16 -1.46 4.88 -2.91 -0.01 -1.47 16 43 H 0.11 0.22 7.41 -2.39 -0.02 0.21 16 44 H 0.39 -2.55 8.70 -74.06 -0.64 -3.20 16 45 H 0.25 -0.92 8.06 -2.91 -0.02 -0.94 16 Total: 0.00 -20.83 426.49 4.23 -16.60 By element: Atomic # 1 Polarization: -8.24 SS G_CDS: 1.14 Total: -7.10 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 8.93 Total: 18.11 kcal Atomic # 7 Polarization: -8.82 SS G_CDS: -4.99 Total: -13.80 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: -2.20 Total: -4.89 kcal Atomic # 14 Polarization: -11.39 SS G_CDS: 2.73 Total: -8.66 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.31 Total: 0.40 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.07 Total: -0.65 kcal Total: -20.83 4.23 -16.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_10544590_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.965 kcal (2) G-P(sol) polarization free energy of solvation -20.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds