Wall clock time and date at job start Tue Mar 9 2021 13:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86295 * 109.46995 * 2 1 4 4 C 1.86297 * 109.47153 * 239.99884 * 2 1 3 5 5 C 1.90002 * 109.46999 * 119.99729 * 2 1 3 6 6 C 3.07392 * 109.46988 * 119.99730 * 2 1 3 7 7 C 4.50601 * 109.47061 * 119.99820 * 2 1 3 8 8 C 1.33579 * 124.38336 * 227.73414 * 7 6 5 9 9 C 1.44688 * 114.56251 * 180.02562 * 8 7 6 10 10 C 1.41835 * 130.33307 * 179.97438 * 9 8 7 11 11 O 1.35431 * 120.51985 * 359.97438 * 10 9 8 12 12 C 1.35902 * 117.99777 * 185.73117 * 11 10 9 13 13 C 1.38701 * 120.06035 * 263.08418 * 12 11 10 14 14 C 1.38178 * 119.95524 * 179.97438 * 13 12 11 15 15 C 1.38244 * 120.07181 * 359.97438 * 14 13 12 16 16 C 1.38282 * 120.12478 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.97691 * 179.97438 * 16 15 14 18 18 O 1.42894 * 109.47102 * 254.98821 * 17 16 15 19 19 Si 1.86297 * 109.47129 * 14.99548 * 17 16 15 20 20 H 1.48498 * 109.47284 * 60.00048 * 19 17 16 21 21 H 1.48500 * 109.47175 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46793 * 299.99639 * 19 17 16 23 23 C 1.38198 * 120.04825 * 359.97438 * 16 15 14 24 24 Br 1.89094 * 120.03949 * 180.02562 * 23 16 15 25 25 N 1.32299 * 118.95302 * 180.25342 * 10 9 8 26 26 C 1.32084 * 121.22465 * 359.44110 * 25 10 9 27 27 N 1.31317 * 122.21279 * 0.60155 * 26 25 10 28 28 C 1.33805 * 121.04057 * 359.68906 * 27 26 25 29 29 S 1.75336 * 124.38918 * 47.76134 * 7 6 5 30 30 H 1.08995 * 109.47325 * 299.99946 * 1 2 3 31 31 H 1.09004 * 109.46842 * 60.00681 * 1 2 3 32 32 H 1.08999 * 109.46590 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47698 * 180.02562 * 3 2 1 34 34 H 1.09011 * 109.47066 * 299.99990 * 3 2 1 35 35 H 1.09003 * 109.47379 * 59.99898 * 3 2 1 36 36 H 1.09005 * 109.47110 * 300.00087 * 4 2 1 37 37 H 1.08997 * 109.47082 * 60.00008 * 4 2 1 38 38 H 1.09000 * 109.46972 * 180.02562 * 4 2 1 39 39 H 1.07994 * 122.72121 * 0.04615 * 8 7 6 40 40 H 1.08009 * 120.02009 * 359.96214 * 13 12 11 41 41 H 1.07997 * 119.96288 * 179.72814 * 14 13 12 42 42 H 1.08005 * 119.93368 * 179.97438 * 15 14 13 43 43 H 1.09011 * 109.46946 * 134.99254 * 17 16 15 44 44 H 0.96705 * 113.99718 * 60.00846 * 18 17 16 45 45 H 1.08010 * 118.89098 * 180.29179 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8876 -1.4490 2.5099 7 6 3.3650 -2.1240 3.6792 8 6 3.8373 -1.5077 4.7662 9 6 4.2636 -2.3974 5.8245 10 6 4.8093 -2.1095 7.1017 11 8 5.0044 -0.8278 7.4932 12 6 5.6384 -0.6114 8.6757 13 6 4.9011 -0.3710 9.8256 14 6 5.5480 -0.1517 11.0267 15 6 6.9291 -0.1724 11.0836 16 6 7.6673 -0.4118 9.9390 17 6 9.1728 -0.4330 10.0047 18 8 9.6913 0.7704 9.4347 19 14 9.7151 -0.5623 11.7823 20 1 9.1762 -1.8129 12.3745 21 1 11.1985 -0.5825 11.8470 22 1 9.2029 0.6062 12.5422 23 6 7.0256 -0.6317 8.7350 24 35 8.0352 -0.9598 7.1702 25 7 5.1297 -3.1129 7.9022 26 6 4.9403 -4.3679 7.5366 27 7 4.4393 -4.6879 6.3657 28 6 4.0891 -3.7444 5.4839 29 16 3.4060 -3.8666 3.8693 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 3.5740 1.7566 -0.0005 34 1 2.1206 2.2703 -0.8901 35 1 2.1207 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5211 37 1 2.1207 -0.3644 -2.4110 38 1 3.5741 -0.8786 -1.5208 39 1 3.8958 -0.4325 4.8485 40 1 3.8220 -0.3549 9.7821 41 1 4.9742 0.0398 11.9213 42 1 7.4325 -0.0003 12.0235 43 1 9.5487 -1.2907 9.4468 44 1 9.3976 1.5759 9.8820 45 1 5.2111 -5.1576 8.2219 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_10910588_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:28 Heat of formation + Delta-G solvation = 48.862182 kcal Electronic energy + Delta-G solvation = -30689.574834 eV Core-core repulsion = 26356.695092 eV Total energy + Delta-G solvation = -4332.879742 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 461.998 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.68382 -41.29980 -39.65151 -37.73647 -37.52181 -34.44307 -33.89027 -33.60687 -32.29285 -30.67568 -30.06747 -29.63756 -28.48968 -28.48820 -27.04213 -26.55411 -25.82584 -23.79900 -23.04109 -22.78886 -20.93219 -20.18571 -18.76865 -18.22411 -17.75340 -17.41861 -17.35368 -16.89694 -16.77173 -16.44483 -16.16566 -15.79042 -15.50429 -15.30331 -15.08029 -14.72914 -14.52135 -14.33198 -14.26342 -14.13487 -14.05903 -13.97547 -13.83654 -13.38169 -13.37308 -13.33379 -13.16393 -13.09679 -12.59992 -12.35792 -12.30853 -12.27604 -12.16487 -12.11252 -11.95100 -11.79565 -11.63085 -11.38857 -11.08970 -10.90091 -10.78209 -10.58172 -10.52102 -10.14278 -9.86343 -9.84821 -9.16332 -0.92181 -0.41476 -0.23079 -0.20011 -0.17973 0.49498 0.52877 0.61005 0.98824 1.29370 1.40794 1.42637 1.50894 1.52935 1.63739 1.81537 2.27216 2.32388 2.36118 2.48043 2.62032 2.79680 3.10305 3.23723 3.27683 3.43843 3.47071 3.65893 3.77545 3.82689 4.00393 4.08417 4.26557 4.32600 4.53631 4.64401 4.64494 4.67926 4.68876 4.69076 4.69192 4.71245 4.76912 4.81128 4.84192 4.92539 5.03692 5.31337 5.38648 5.48249 5.48466 5.53803 6.01640 6.45635 6.49890 6.83698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.145 2.855 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.355 4.355 6 C -0.127 4.127 7 C -0.084 4.084 8 C -0.060 4.060 9 C -0.185 4.185 10 C 0.422 3.578 11 O -0.229 6.229 12 C 0.111 3.889 13 C -0.098 4.098 14 C -0.084 4.084 15 C -0.114 4.114 16 C -0.083 4.083 17 C -0.089 4.089 18 O -0.524 6.524 19 Si 0.952 3.048 20 H -0.245 1.245 21 H -0.247 1.247 22 H -0.248 1.248 23 C -0.065 4.065 24 Br -0.019 7.019 25 N -0.565 5.565 26 C 0.357 3.643 27 N -0.504 5.504 28 C 0.108 3.892 29 S 0.219 5.781 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.160 0.840 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.122 0.878 44 H 0.375 0.625 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 2.503 1.133 3.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.331 2.669 3 C -0.561 4.561 4 C -0.561 4.561 5 C -0.393 4.393 6 C -0.129 4.129 7 C -0.199 4.199 8 C -0.091 4.091 9 C -0.199 4.199 10 C 0.229 3.771 11 O -0.130 6.130 12 C 0.067 3.933 13 C -0.117 4.117 14 C -0.102 4.102 15 C -0.132 4.132 16 C -0.085 4.085 17 C -0.200 4.200 18 O -0.329 6.329 19 Si 0.773 3.227 20 H -0.168 1.168 21 H -0.171 1.171 22 H -0.172 1.172 23 C -0.146 4.146 24 Br 0.068 6.932 25 N -0.295 5.295 26 C 0.066 3.934 27 N -0.224 5.224 28 C -0.142 4.142 29 S 0.484 5.516 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.177 0.823 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.140 0.860 44 H 0.222 0.778 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.491 0.106 0.617 1.617 hybrid contribution -0.320 1.965 1.143 2.296 sum -1.812 2.071 1.760 3.266 Atomic orbital electron populations 1.26117 1.19793 1.05083 1.05071 0.77081 0.66102 0.64720 0.59014 1.26115 1.06805 1.18082 1.05071 1.26118 1.06810 1.08484 1.14686 1.36279 0.99597 0.99666 1.03768 1.19516 0.99989 0.99346 0.94045 1.19527 1.08124 0.96829 0.95411 1.20870 0.97540 1.00949 0.89726 1.19488 1.10890 0.94448 0.95074 1.19999 0.85903 0.84213 0.87024 1.84644 1.71170 1.21206 1.36002 1.18220 0.88785 1.01626 0.84680 1.21283 1.00934 0.99031 0.90424 1.21127 0.94097 0.97372 0.97640 1.21280 0.94690 0.99502 0.97739 1.20181 0.97165 0.99621 0.91541 1.25173 0.89786 0.92268 1.12731 1.86615 1.72191 1.14596 1.59457 0.85668 0.81607 0.81944 0.73505 1.16823 1.17068 1.17198 1.22057 0.92845 1.05724 0.93926 1.96813 1.71128 1.94175 1.31104 1.68042 1.24764 1.01281 1.35455 1.24788 0.87796 0.90775 0.90079 1.68087 1.15656 1.35322 1.03336 1.23934 0.99209 0.90538 1.00561 1.84543 1.62455 1.00058 1.04550 0.90816 0.90257 0.90817 0.90803 0.90265 0.90814 0.90815 0.90240 0.90802 0.82252 0.84032 0.83805 0.84398 0.85978 0.77784 0.77160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.14 8.65 101.05 0.87 2.02 16 2 Si 1.15 -3.53 14.26 -169.99 -2.42 -5.95 16 3 C -0.45 1.12 8.65 101.05 0.87 1.99 16 4 C -0.45 1.11 8.65 101.05 0.87 1.99 16 5 C -0.35 -0.43 12.14 29.55 0.36 -0.07 16 6 C -0.13 -0.41 13.64 -38.83 -0.53 -0.94 16 7 C -0.08 -0.27 6.15 -39.28 -0.24 -0.52 16 8 C -0.06 -0.18 10.19 -38.67 -0.39 -0.57 16 9 C -0.18 -0.69 6.08 -105.31 -0.64 -1.33 16 10 C 0.42 1.53 7.11 -15.98 -0.11 1.42 16 11 O -0.23 -0.75 9.37 -2.19 -0.02 -0.77 16 12 C 0.11 0.25 5.00 -39.18 -0.20 0.06 16 13 C -0.10 -0.01 9.99 -39.43 -0.39 -0.40 16 14 C -0.08 0.13 10.04 -39.60 -0.40 -0.27 16 15 C -0.11 0.12 8.66 -39.56 -0.34 -0.22 16 16 C -0.08 -0.04 5.26 -104.62 -0.55 -0.60 16 17 C -0.09 0.01 2.02 36.01 0.07 0.09 16 18 O -0.52 -0.11 12.70 -35.23 -0.45 -0.55 16 19 Si 0.95 -1.23 25.49 -169.99 -4.33 -5.56 16 20 H -0.25 0.17 7.11 56.52 0.40 0.57 16 21 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 22 H -0.25 0.51 6.73 56.52 0.38 0.89 16 23 C -0.06 -0.15 6.23 -39.37 -0.25 -0.40 16 24 Br -0.02 -0.06 31.04 -68.01 -2.11 -2.17 16 25 N -0.56 -1.73 9.42 -14.16 -0.13 -1.87 16 26 C 0.36 0.71 12.26 -92.31 -1.13 -0.42 16 27 N -0.50 -1.86 10.47 -13.26 -0.14 -2.00 16 28 C 0.11 0.42 7.69 -16.02 -0.12 0.30 16 29 S 0.22 0.60 23.16 -107.50 -2.49 -1.89 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 32 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.08 -0.25 7.96 -51.92 -0.41 -0.66 16 35 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 36 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 37 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 38 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 39 H 0.16 0.25 8.06 -52.49 -0.42 -0.17 16 40 H 0.14 -0.18 8.06 -52.48 -0.42 -0.61 16 41 H 0.14 -0.60 8.06 -52.49 -0.42 -1.02 16 42 H 0.14 -0.41 4.88 -52.48 -0.26 -0.66 16 43 H 0.12 0.04 7.22 -51.92 -0.37 -0.34 16 44 H 0.38 -1.25 8.70 45.56 0.40 -0.85 16 45 H 0.21 -0.37 8.06 -52.48 -0.42 -0.80 16 LS Contribution 429.96 15.07 6.48 6.48 Total: 0.00 -7.91 429.96 -12.33 -20.24 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: -4.46 Total: -8.06 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.25 Total: 2.12 kcal Atomic # 7 Polarization: -3.60 SS G_CDS: -0.27 Total: -3.87 kcal Atomic # 8 Polarization: -0.86 SS G_CDS: -0.47 Total: -1.33 kcal Atomic # 14 Polarization: -4.75 SS G_CDS: -6.76 Total: -11.51 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.49 Total: -1.89 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -2.11 Total: -2.17 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -7.91 -12.33 -20.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_10910588_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.104 kcal (2) G-P(sol) polarization free energy of solvation -7.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds