Wall clock time and date at job start Tue Mar 9 2021 13:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86295 * 109.46995 * 2 1 4 4 C 1.86297 * 109.47153 * 239.99884 * 2 1 3 5 5 C 1.90002 * 109.46999 * 119.99729 * 2 1 3 6 6 C 3.07392 * 109.46988 * 119.99730 * 2 1 3 7 7 C 4.50601 * 109.47061 * 119.99820 * 2 1 3 8 8 C 1.33579 * 124.38336 * 227.73414 * 7 6 5 9 9 C 1.44688 * 114.56251 * 180.02562 * 8 7 6 10 10 C 1.41835 * 130.33307 * 179.97438 * 9 8 7 11 11 O 1.35431 * 120.51985 * 359.97438 * 10 9 8 12 12 C 1.35902 * 117.99777 * 185.73117 * 11 10 9 13 13 C 1.38701 * 120.06035 * 263.08418 * 12 11 10 14 14 C 1.38178 * 119.95524 * 179.97438 * 13 12 11 15 15 C 1.38244 * 120.07181 * 359.97438 * 14 13 12 16 16 C 1.38282 * 120.12478 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.97691 * 179.97438 * 16 15 14 18 18 O 1.42894 * 109.47102 * 254.98821 * 17 16 15 19 19 Si 1.86297 * 109.47129 * 14.99548 * 17 16 15 20 20 H 1.48498 * 109.47284 * 60.00048 * 19 17 16 21 21 H 1.48500 * 109.47175 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46793 * 299.99639 * 19 17 16 23 23 C 1.38198 * 120.04825 * 359.97438 * 16 15 14 24 24 Br 1.89094 * 120.03949 * 180.02562 * 23 16 15 25 25 N 1.32299 * 118.95302 * 180.25342 * 10 9 8 26 26 C 1.32084 * 121.22465 * 359.44110 * 25 10 9 27 27 N 1.31317 * 122.21279 * 0.60155 * 26 25 10 28 28 C 1.33805 * 121.04057 * 359.68906 * 27 26 25 29 29 S 1.75336 * 124.38918 * 47.76134 * 7 6 5 30 30 H 1.08995 * 109.47325 * 299.99946 * 1 2 3 31 31 H 1.09004 * 109.46842 * 60.00681 * 1 2 3 32 32 H 1.08999 * 109.46590 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47698 * 180.02562 * 3 2 1 34 34 H 1.09011 * 109.47066 * 299.99990 * 3 2 1 35 35 H 1.09003 * 109.47379 * 59.99898 * 3 2 1 36 36 H 1.09005 * 109.47110 * 300.00087 * 4 2 1 37 37 H 1.08997 * 109.47082 * 60.00008 * 4 2 1 38 38 H 1.09000 * 109.46972 * 180.02562 * 4 2 1 39 39 H 1.07994 * 122.72121 * 0.04615 * 8 7 6 40 40 H 1.08009 * 120.02009 * 359.96214 * 13 12 11 41 41 H 1.07997 * 119.96288 * 179.72814 * 14 13 12 42 42 H 1.08005 * 119.93368 * 179.97438 * 15 14 13 43 43 H 1.09011 * 109.46946 * 134.99254 * 17 16 15 44 44 H 0.96705 * 113.99718 * 60.00846 * 18 17 16 45 45 H 1.08010 * 118.89098 * 180.29179 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4964 -0.8956 1.5514 6 6 2.8876 -1.4490 2.5099 7 6 3.3650 -2.1240 3.6792 8 6 3.8373 -1.5077 4.7662 9 6 4.2636 -2.3974 5.8245 10 6 4.8093 -2.1095 7.1017 11 8 5.0044 -0.8278 7.4932 12 6 5.6384 -0.6114 8.6757 13 6 4.9011 -0.3710 9.8256 14 6 5.5480 -0.1517 11.0267 15 6 6.9291 -0.1724 11.0836 16 6 7.6673 -0.4118 9.9390 17 6 9.1728 -0.4330 10.0047 18 8 9.6913 0.7704 9.4347 19 14 9.7151 -0.5623 11.7823 20 1 9.1762 -1.8129 12.3745 21 1 11.1985 -0.5825 11.8470 22 1 9.2029 0.6062 12.5422 23 6 7.0256 -0.6317 8.7350 24 35 8.0352 -0.9598 7.1702 25 7 5.1297 -3.1129 7.9022 26 6 4.9403 -4.3679 7.5366 27 7 4.4393 -4.6879 6.3657 28 6 4.0891 -3.7444 5.4839 29 16 3.4060 -3.8666 3.8693 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 3.5740 1.7566 -0.0005 34 1 2.1206 2.2703 -0.8901 35 1 2.1207 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5211 37 1 2.1207 -0.3644 -2.4110 38 1 3.5741 -0.8786 -1.5208 39 1 3.8958 -0.4325 4.8485 40 1 3.8220 -0.3549 9.7821 41 1 4.9742 0.0398 11.9213 42 1 7.4325 -0.0003 12.0235 43 1 9.5487 -1.2907 9.4468 44 1 9.3976 1.5759 9.8820 45 1 5.2111 -5.1576 8.2219 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_10910588_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:27 Heat of formation + Delta-G solvation = 56.498210 kcal Electronic energy + Delta-G solvation = -30689.243711 eV Core-core repulsion = 26356.695092 eV Total energy + Delta-G solvation = -4332.548619 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 461.998 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.84547 -41.38548 -39.71360 -37.92475 -37.49818 -34.62748 -34.04898 -33.64204 -32.32648 -30.81023 -30.16034 -29.43873 -28.27596 -28.27154 -27.01198 -26.73758 -25.99651 -23.85318 -23.14258 -22.86224 -21.08902 -20.30982 -18.76738 -18.35598 -17.81853 -17.56151 -17.35239 -17.06566 -16.86493 -16.52641 -16.19375 -15.83265 -15.59572 -15.37236 -15.02776 -14.70989 -14.59626 -14.42507 -14.17640 -14.11594 -13.97173 -13.86583 -13.81213 -13.28391 -13.15985 -13.14796 -13.11643 -12.96974 -12.79513 -12.43883 -12.38993 -12.26488 -12.13815 -12.11945 -12.02877 -11.72539 -11.71532 -11.53374 -11.21402 -10.80255 -10.76833 -10.66980 -10.49362 -10.14111 -10.03895 -9.91490 -9.36842 -1.11515 -0.51718 -0.42816 -0.36189 -0.16058 0.30464 0.41590 0.42676 1.07048 1.38088 1.41830 1.48157 1.53244 1.60931 1.71631 1.91121 2.30745 2.33175 2.37842 2.45047 2.54681 2.66054 2.97688 3.09396 3.23747 3.30650 3.55082 3.67158 3.77874 3.82385 4.00609 4.10783 4.19995 4.30824 4.48556 4.58528 4.63917 4.75947 4.83591 4.85348 4.85549 4.88493 4.91158 4.91332 4.93695 4.95282 5.09425 5.31652 5.41428 5.60784 5.70197 5.70663 5.88786 6.33845 6.64852 6.67458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.207 2.793 3 C -0.463 4.463 4 C -0.464 4.464 5 C -0.341 4.341 6 C -0.178 4.178 7 C -0.090 4.090 8 C -0.066 4.066 9 C -0.197 4.197 10 C 0.418 3.582 11 O -0.236 6.236 12 C 0.088 3.912 13 C -0.102 4.102 14 C -0.073 4.073 15 C -0.110 4.110 16 C -0.087 4.087 17 C -0.097 4.097 18 O -0.541 6.541 19 Si 0.990 3.010 20 H -0.251 1.251 21 H -0.274 1.274 22 H -0.226 1.226 23 C -0.082 4.082 24 Br -0.043 7.043 25 N -0.569 5.569 26 C 0.356 3.644 27 N -0.520 5.520 28 C 0.094 3.906 29 S 0.227 5.773 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.178 0.822 42 H 0.162 0.838 43 H 0.109 0.891 44 H 0.389 0.611 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.997 3.362 2.302 5.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.388 2.612 3 C -0.571 4.571 4 C -0.571 4.571 5 C -0.376 4.376 6 C -0.180 4.180 7 C -0.206 4.206 8 C -0.097 4.097 9 C -0.212 4.212 10 C 0.225 3.775 11 O -0.137 6.137 12 C 0.044 3.956 13 C -0.121 4.121 14 C -0.091 4.091 15 C -0.128 4.128 16 C -0.090 4.090 17 C -0.206 4.206 18 O -0.348 6.348 19 Si 0.811 3.189 20 H -0.174 1.174 21 H -0.199 1.199 22 H -0.149 1.149 23 C -0.162 4.162 24 Br 0.043 6.957 25 N -0.300 5.300 26 C 0.066 3.934 27 N -0.241 5.241 28 C -0.156 4.156 29 S 0.492 5.508 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.184 0.816 40 H 0.171 0.829 41 H 0.196 0.804 42 H 0.179 0.821 43 H 0.127 0.873 44 H 0.239 0.761 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -2.263 0.975 1.810 3.057 hybrid contribution -0.079 1.741 0.777 1.908 sum -2.342 2.716 2.587 4.421 Atomic orbital electron populations 1.26220 1.20148 1.05081 1.05529 0.76342 0.65046 0.63282 0.56574 1.26233 1.06635 1.18684 1.05529 1.26237 1.06651 1.08631 1.15603 1.37758 0.97804 0.98297 1.03735 1.19966 1.01861 1.01068 0.95130 1.19676 1.08084 0.97106 0.95700 1.20957 0.97748 1.01276 0.89677 1.19611 1.11444 0.94610 0.95503 1.20125 0.85730 0.84619 0.87074 1.84634 1.71211 1.21043 1.36850 1.18529 0.89003 1.03008 0.85026 1.21533 1.01576 0.98727 0.90283 1.21535 0.94140 0.95388 0.98040 1.21584 0.95004 0.98334 0.97890 1.20367 0.97587 0.99540 0.91488 1.25361 0.89473 0.91801 1.13949 1.86578 1.72448 1.15440 1.60343 0.85137 0.79544 0.82306 0.71932 1.17427 1.19901 1.14868 1.22151 0.92855 1.07430 0.93777 1.96769 1.71667 1.94431 1.32810 1.68113 1.24906 1.01503 1.35459 1.25501 0.86653 0.91260 0.90021 1.68138 1.16512 1.35446 1.03955 1.24134 0.99545 0.90845 1.01065 1.84364 1.62300 1.00013 1.04147 0.91086 0.89093 0.91076 0.91224 0.89116 0.91068 0.91063 0.89080 0.91209 0.81623 0.82923 0.80448 0.82053 0.87298 0.76142 0.73919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.63 8.65 113.37 0.98 3.62 16 2 Si 1.21 -7.85 14.26 68.60 0.98 -6.87 16 3 C -0.46 2.50 8.65 113.37 0.98 3.48 16 4 C -0.46 2.50 8.65 113.37 0.98 3.48 16 5 C -0.34 -1.12 12.14 74.32 0.90 -0.22 16 6 C -0.18 -1.47 13.64 30.02 0.41 -1.06 16 7 C -0.09 -0.80 6.15 22.46 0.14 -0.66 16 8 C -0.07 -0.56 10.19 22.86 0.23 -0.32 16 9 C -0.20 -1.90 6.08 -20.31 -0.12 -2.03 16 10 C 0.42 3.74 7.11 85.51 0.61 4.35 16 11 O -0.24 -1.94 9.37 -30.74 -0.29 -2.23 16 12 C 0.09 0.47 5.00 22.53 0.11 0.58 16 13 C -0.10 0.04 9.99 22.37 0.22 0.26 16 14 C -0.07 0.37 10.04 22.26 0.22 0.60 16 15 C -0.11 0.43 8.66 22.28 0.19 0.63 16 16 C -0.09 -0.09 5.26 -19.86 -0.10 -0.19 16 17 C -0.10 0.00 2.02 71.24 0.14 0.14 16 18 O -0.54 -0.54 12.70 -148.98 -1.89 -2.43 16 19 Si 0.99 -3.45 25.49 68.60 1.75 -1.70 16 20 H -0.25 0.65 7.11 99.48 0.71 1.36 16 21 H -0.27 -0.24 7.11 99.48 0.71 0.47 16 22 H -0.23 1.59 6.73 99.48 0.67 2.26 16 23 C -0.08 -0.46 6.23 22.41 0.14 -0.32 16 24 Br -0.04 -0.38 31.04 -20.37 -0.63 -1.01 16 25 N -0.57 -4.09 9.42 -311.70 -2.94 -7.03 16 26 C 0.36 1.68 12.26 180.94 2.22 3.90 16 27 N -0.52 -4.51 10.47 -195.87 -2.05 -6.56 16 28 C 0.09 0.92 7.69 84.83 0.65 1.57 16 29 S 0.23 1.68 23.16 -56.49 -1.31 0.38 16 30 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 31 H 0.09 -0.70 7.96 -2.38 -0.02 -0.72 16 32 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 33 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 34 H 0.09 -0.67 7.96 -2.38 -0.02 -0.69 16 35 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 37 H 0.09 -0.68 7.96 -2.39 -0.02 -0.70 16 38 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 39 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 40 H 0.15 -0.48 8.06 -2.91 -0.02 -0.51 16 41 H 0.18 -2.12 8.06 -2.91 -0.02 -2.14 16 42 H 0.16 -1.44 4.88 -2.91 -0.01 -1.45 16 43 H 0.11 0.23 7.22 -2.38 -0.02 0.22 16 44 H 0.39 -2.60 8.70 -74.05 -0.64 -3.25 16 45 H 0.25 -0.92 8.06 -2.91 -0.02 -0.94 16 Total: 0.00 -20.51 429.96 3.68 -16.83 By element: Atomic # 1 Polarization: -8.32 SS G_CDS: 1.14 Total: -7.18 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 8.91 Total: 17.80 kcal Atomic # 7 Polarization: -8.60 SS G_CDS: -4.99 Total: -13.59 kcal Atomic # 8 Polarization: -2.48 SS G_CDS: -2.18 Total: -4.66 kcal Atomic # 14 Polarization: -11.30 SS G_CDS: 2.73 Total: -8.57 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.31 Total: 0.38 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -0.63 Total: -1.01 kcal Total: -20.51 3.68 -16.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_10910588_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.332 kcal (2) G-P(sol) polarization free energy of solvation -20.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds