Wall clock time and date at job start Tue Mar 9 2021 13:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86297 * 109.47079 * 2 1 4 4 C 1.86302 * 109.47089 * 240.00368 * 2 1 3 5 5 C 1.89996 * 109.47264 * 120.00382 * 2 1 3 6 6 C 3.07402 * 109.47231 * 120.00381 * 2 1 3 7 7 C 4.50596 * 109.47238 * 120.00396 * 2 1 3 8 8 C 1.33581 * 124.38708 * 30.10632 * 7 6 5 9 9 C 1.44692 * 114.56430 * 180.02562 * 8 7 6 10 10 C 1.41826 * 130.33322 * 180.02562 * 9 8 7 11 11 O 1.35428 * 120.51967 * 0.02562 * 10 9 8 12 12 C 1.35899 * 117.99850 * 185.90459 * 11 10 9 13 13 C 1.38751 * 120.03784 * 250.84910 * 12 11 10 14 14 C 1.38175 * 119.98767 * 179.69797 * 13 12 11 15 15 C 1.38213 * 120.08244 * 0.53830 * 14 13 12 16 16 C 1.50700 * 119.95727 * 179.76410 * 15 14 13 17 17 O 1.42897 * 109.46915 * 254.72432 * 16 15 14 18 18 Si 1.86296 * 109.46927 * 14.71890 * 16 15 14 19 19 H 1.48508 * 109.47151 * 60.00462 * 18 16 15 20 20 H 1.48497 * 109.47070 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47620 * 300.00270 * 18 16 15 22 22 C 1.38526 * 120.08846 * 359.48381 * 15 14 13 23 23 F 1.35105 * 119.99822 * 180.25596 * 22 15 14 24 24 C 1.38345 * 120.00637 * 0.23742 * 22 15 14 25 25 N 1.32296 * 118.95692 * 180.27897 * 10 9 8 26 26 C 1.32092 * 121.22362 * 359.39454 * 25 10 9 27 27 N 1.31324 * 122.20746 * 0.64835 * 26 25 10 28 28 C 1.33807 * 121.04056 * 359.66537 * 27 26 25 29 29 S 1.75347 * 124.38915 * 210.12717 * 7 6 5 30 30 H 1.08999 * 109.46986 * 299.99789 * 1 2 3 31 31 H 1.08997 * 109.47309 * 59.99625 * 1 2 3 32 32 H 1.09007 * 109.47456 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46938 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47356 * 300.00346 * 3 2 1 35 35 H 1.08999 * 109.47039 * 60.00244 * 3 2 1 36 36 H 1.09007 * 109.46876 * 300.00238 * 4 2 1 37 37 H 1.09002 * 109.47338 * 59.99461 * 4 2 1 38 38 H 1.08993 * 109.47306 * 180.02562 * 4 2 1 39 39 H 1.07994 * 122.71931 * 0.02562 * 8 7 6 40 40 H 1.07994 * 120.00852 * 359.97438 * 13 12 11 41 41 H 1.08001 * 119.95588 * 180.27422 * 14 13 12 42 42 H 1.09002 * 109.47237 * 134.72126 * 16 15 14 43 43 H 0.96694 * 114.00404 * 59.99963 * 17 16 15 44 44 H 1.07994 * 120.04088 * 180.02562 * 24 22 15 45 45 H 1.07994 * 118.89583 * 180.31454 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4963 -0.8957 1.5512 6 6 2.8877 -1.4493 2.5098 7 6 3.3650 -2.1244 3.6789 8 6 3.0985 -3.3993 3.9756 9 6 3.6893 -3.8654 5.2114 10 6 3.6255 -5.1366 5.8372 11 8 2.9256 -6.1479 5.2702 12 6 2.7963 -7.3053 5.9705 13 6 3.4722 -8.4452 5.5593 14 6 3.3449 -9.6198 6.2757 15 6 2.5360 -9.6641 7.3956 16 6 2.3950 -10.9481 8.1718 17 8 1.1190 -11.5312 7.9001 18 14 3.7399 -12.1324 7.6625 19 1 5.0661 -11.5265 7.9447 20 1 3.6014 -13.3974 8.4277 21 1 3.6249 -12.4171 6.2096 22 6 1.8593 -8.5282 7.8088 23 9 1.0732 -8.5722 8.9067 24 6 1.9886 -7.3486 7.0976 25 7 4.2563 -5.3174 6.9859 26 6 4.9486 -4.3428 7.5477 27 7 5.0387 -3.1481 7.0099 28 6 4.4309 -2.8651 5.8519 29 16 4.3747 -1.3846 4.9069 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.5740 1.7564 0.0005 34 1 2.1206 2.2703 -0.8899 35 1 2.1206 2.2702 0.8900 36 1 2.1205 -1.9058 -1.5213 37 1 2.1205 -0.3643 -2.4112 38 1 3.5739 -0.8786 -1.5210 39 1 2.4913 -4.0309 3.3443 40 1 4.1012 -8.4132 4.6821 41 1 3.8748 -10.5056 5.9577 42 1 2.4795 -10.7392 9.2382 43 1 0.9741 -11.7438 6.9681 44 1 1.4616 -6.4627 7.4195 45 1 5.4532 -4.5332 8.4834 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_11680694_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:47 Heat of formation + Delta-G solvation = -2.917227 kcal Electronic energy + Delta-G solvation = -30479.219775 eV Core-core repulsion = 26014.458737 eV Total energy + Delta-G solvation = -4464.761038 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 402.078 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.94547 -42.74706 -41.21007 -39.53330 -37.80901 -37.48328 -34.51502 -33.93724 -32.46675 -31.80846 -30.52454 -29.67233 -28.51965 -28.51748 -27.39222 -26.20479 -25.54667 -24.37997 -23.19321 -22.83960 -21.12188 -20.48635 -18.82823 -18.56001 -18.15561 -17.65443 -17.35096 -17.06950 -16.96964 -16.83714 -16.59259 -16.26650 -15.86336 -15.68686 -15.46299 -15.34789 -15.22759 -15.00263 -14.39068 -14.33994 -14.28193 -14.18176 -14.08831 -13.95015 -13.50661 -13.41301 -13.40014 -13.29442 -13.19283 -12.90162 -12.65505 -12.42636 -12.30853 -12.24912 -12.24102 -12.14378 -11.84178 -11.67750 -11.43612 -10.96099 -10.81976 -10.63740 -10.56645 -10.23247 -9.94474 -9.84492 -9.22877 -1.00202 -0.50086 -0.28948 -0.25930 -0.08852 0.44189 0.53757 0.99303 1.28949 1.33837 1.41835 1.43404 1.46820 1.59602 1.80773 2.23809 2.28520 2.31646 2.40140 2.56284 2.70253 3.00143 3.12347 3.19897 3.27442 3.39414 3.41604 3.56654 3.72693 3.78751 3.93959 4.11697 4.27836 4.41819 4.60868 4.61541 4.62083 4.65823 4.65863 4.66164 4.66268 4.68187 4.71842 4.76756 4.82193 4.90602 4.93654 5.35863 5.37292 5.45403 5.45626 5.48500 5.98661 6.43402 6.44577 6.75800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.146 2.854 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.353 4.353 6 C -0.129 4.129 7 C -0.082 4.082 8 C -0.063 4.063 9 C -0.186 4.186 10 C 0.418 3.582 11 O -0.230 6.230 12 C 0.121 3.879 13 C -0.114 4.114 14 C -0.084 4.084 15 C -0.149 4.149 16 C -0.083 4.083 17 O -0.532 6.532 18 Si 0.953 3.047 19 H -0.245 1.245 20 H -0.248 1.248 21 H -0.248 1.248 22 C 0.147 3.853 23 F -0.122 7.122 24 C -0.150 4.150 25 N -0.566 5.566 26 C 0.357 3.643 27 N -0.503 5.503 28 C 0.107 3.893 29 S 0.223 5.777 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.161 0.839 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.121 0.879 43 H 0.377 0.623 44 H 0.142 0.858 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 0.517 -4.743 4.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.331 2.669 3 C -0.561 4.561 4 C -0.561 4.561 5 C -0.391 4.391 6 C -0.131 4.131 7 C -0.197 4.197 8 C -0.093 4.093 9 C -0.201 4.201 10 C 0.224 3.776 11 O -0.132 6.132 12 C 0.079 3.921 13 C -0.132 4.132 14 C -0.102 4.102 15 C -0.150 4.150 16 C -0.193 4.193 17 O -0.337 6.337 18 Si 0.774 3.226 19 H -0.168 1.168 20 H -0.171 1.171 21 H -0.172 1.172 22 C 0.127 3.873 23 F -0.101 7.101 24 C -0.169 4.169 25 N -0.297 5.297 26 C 0.066 3.934 27 N -0.223 5.223 28 C -0.144 4.144 29 S 0.488 5.512 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.178 0.822 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.139 0.861 43 H 0.224 0.776 44 H 0.160 0.840 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.133 1.262 -3.395 4.204 hybrid contribution -1.264 -1.152 -0.587 1.808 sum 0.869 0.110 -3.983 4.078 Atomic orbital electron populations 1.26119 1.19785 1.05092 1.05100 0.77086 0.66124 0.64702 0.58997 1.26117 1.06799 1.18061 1.05128 1.26118 1.06789 1.08479 1.14691 1.36312 0.99271 0.99421 1.04063 1.19512 1.00230 0.99445 0.93926 1.19548 1.05917 0.96362 0.97908 1.20871 0.99733 0.94160 0.94539 1.19512 1.07725 0.93069 0.99745 1.20003 0.85476 0.84755 0.87380 1.84631 1.65867 1.20315 1.42384 1.18186 0.96909 0.84316 0.92674 1.21096 0.98959 0.91737 1.01444 1.20869 0.97453 0.98312 0.93581 1.20524 0.99950 0.96175 0.98377 1.25012 0.95536 0.95054 1.03721 1.86588 1.33550 1.82099 1.31435 0.85641 0.77080 0.79167 0.80666 1.16823 1.17135 1.17233 1.17065 0.92106 0.93087 0.85044 1.91570 1.71405 1.96904 1.50173 1.21247 1.01379 0.98613 0.95700 1.68072 1.14436 1.36442 1.10709 1.24834 0.89429 0.81579 0.97565 1.68106 1.22356 1.22606 1.09241 1.23970 0.96109 0.98572 0.95702 1.84592 1.49321 1.05990 1.11290 0.90807 0.90240 0.90817 0.90797 0.90206 0.90797 0.90821 0.90237 0.90811 0.82173 0.83852 0.83894 0.86095 0.77625 0.84027 0.77016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.29 8.65 101.05 0.87 2.16 16 2 Si 1.15 -4.02 14.26 -169.99 -2.42 -6.44 16 3 C -0.45 1.30 8.65 101.05 0.87 2.18 16 4 C -0.45 1.31 8.65 101.05 0.87 2.19 16 5 C -0.35 -0.23 12.14 29.55 0.36 0.13 16 6 C -0.13 -0.34 13.64 -38.84 -0.53 -0.87 16 7 C -0.08 -0.21 6.15 -39.29 -0.24 -0.45 16 8 C -0.06 -0.13 10.19 -38.67 -0.39 -0.52 16 9 C -0.19 -0.53 6.08 -105.31 -0.64 -1.17 16 10 C 0.42 1.14 7.44 -15.98 -0.12 1.02 16 11 O -0.23 -0.49 9.95 -2.17 -0.02 -0.51 16 12 C 0.12 0.17 5.26 -39.21 -0.21 -0.04 16 13 C -0.11 0.03 9.99 -39.41 -0.39 -0.37 16 14 C -0.08 0.08 8.65 -39.61 -0.34 -0.27 16 15 C -0.15 -0.04 5.27 -104.52 -0.55 -0.59 16 16 C -0.08 0.04 2.45 36.01 0.09 0.12 16 17 O -0.53 -0.22 12.88 -35.23 -0.45 -0.67 16 18 Si 0.95 -1.44 25.48 -169.99 -4.33 -5.77 16 19 H -0.25 0.23 7.11 56.52 0.40 0.63 16 20 H -0.25 -0.02 7.11 56.52 0.40 0.39 16 21 H -0.25 0.54 6.74 56.52 0.38 0.92 16 22 C 0.15 0.27 7.24 -39.44 -0.29 -0.02 16 23 F -0.12 -0.41 16.75 2.25 0.04 -0.37 16 24 C -0.15 -0.25 9.45 -39.36 -0.37 -0.62 16 25 N -0.57 -1.37 9.16 -14.17 -0.13 -1.50 16 26 C 0.36 0.49 12.26 -92.30 -1.13 -0.64 16 27 N -0.50 -1.57 10.47 -13.26 -0.14 -1.71 16 28 C 0.11 0.34 7.69 -16.02 -0.12 0.22 16 29 S 0.22 0.46 23.16 -107.50 -2.49 -2.03 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 32 H 0.07 -0.18 7.96 -51.92 -0.41 -0.60 16 33 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 34 H 0.08 -0.28 7.96 -51.93 -0.41 -0.70 16 35 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 36 H 0.07 -0.19 7.96 -51.92 -0.41 -0.60 16 37 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 38 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 39 H 0.16 0.07 8.06 -52.49 -0.42 -0.35 16 40 H 0.14 -0.28 8.06 -52.49 -0.42 -0.70 16 41 H 0.14 -0.41 4.88 -52.49 -0.26 -0.67 16 42 H 0.12 -0.06 7.90 -51.93 -0.41 -0.47 16 43 H 0.38 -1.25 8.70 45.56 0.40 -0.85 16 44 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 45 H 0.21 -0.49 8.06 -52.49 -0.42 -0.91 16 LS Contribution 418.30 15.07 6.30 6.30 Total: 0.00 -7.74 418.30 -10.41 -18.15 By element: Atomic # 1 Polarization: -3.43 SS G_CDS: -4.50 Total: -7.93 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.26 Total: 2.48 kcal Atomic # 7 Polarization: -2.93 SS G_CDS: -0.27 Total: -3.20 kcal Atomic # 8 Polarization: -0.70 SS G_CDS: -0.48 Total: -1.18 kcal Atomic # 9 Polarization: -0.41 SS G_CDS: 0.04 Total: -0.37 kcal Atomic # 14 Polarization: -5.46 SS G_CDS: -6.75 Total: -12.21 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -2.49 Total: -2.03 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -7.74 -10.41 -18.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_11680694_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.229 kcal (2) G-P(sol) polarization free energy of solvation -7.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds