Wall clock time and date at job start Tue Mar 9 2021 13:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33333 * 125.95561 * 2 1 4 4 C 1.50702 * 122.70650 * 359.97438 * 3 2 1 5 5 O 1.42902 * 109.46935 * 29.99874 * 4 3 2 6 6 Si 1.86296 * 109.47050 * 149.99932 * 4 3 2 7 7 N 1.32117 * 114.58144 * 179.75073 * 3 2 1 8 8 C 1.29693 * 116.86367 * 0.47335 * 7 3 2 9 9 N 1.38612 * 124.94621 * 179.81483 * 8 7 3 10 10 C 1.46495 * 120.00092 * 179.71970 * 9 8 7 11 11 H 1.09010 * 112.85063 * 23.80171 * 10 9 8 12 12 C 1.53784 * 113.61756 * 154.99624 * 10 9 8 13 13 C 1.53788 * 87.07878 * 140.06661 * 12 10 9 14 14 H 1.08996 * 113.61401 * 89.20483 * 13 12 10 15 15 C 1.50696 * 113.61137 * 220.02139 * 13 12 10 16 16 N 1.34777 * 120.00076 * 178.47520 * 15 13 12 17 17 O 1.21281 * 120.00074 * 358.47022 * 15 13 12 18 18 C 1.53784 * 87.17203 * 334.61261 * 13 12 10 19 19 S 1.70959 * 110.10228 * 359.54756 * 8 7 3 20 20 H 1.08991 * 109.47363 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47012 * 300.02975 * 1 2 3 22 22 H 1.09000 * 109.46926 * 60.02431 * 1 2 3 23 23 H 1.09008 * 109.46704 * 270.00312 * 4 3 2 24 24 H 0.96705 * 113.99318 * 179.97438 * 5 4 3 25 25 H 1.48498 * 109.99731 * 178.67969 * 6 4 3 26 26 H 1.48498 * 110.00188 * 300.00118 * 6 4 3 27 27 H 0.96998 * 119.99746 * 359.71864 * 9 8 7 28 28 H 1.08999 * 113.60927 * 25.52290 * 12 10 9 29 29 H 1.08997 * 113.61210 * 254.61376 * 12 10 9 30 30 H 0.97001 * 120.00485 * 180.02562 * 16 15 13 31 31 H 0.97005 * 119.99790 * 359.72082 * 16 15 13 32 32 H 1.09000 * 113.60967 * 139.94266 * 18 13 12 33 33 H 1.08996 * 113.61145 * 270.84237 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0793 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4811 2.5023 0.6726 6 14 2.9321 3.6151 0.8778 7 7 3.5851 0.8187 0.0052 8 6 3.9315 -0.4311 0.0001 9 7 5.2385 -0.8927 0.0006 10 6 5.5066 -2.3329 0.0006 11 1 4.6806 -2.9173 -0.4052 12 6 6.8750 -2.7049 -0.5944 13 6 6.9916 -3.7488 0.5288 14 1 6.5730 -4.7205 0.2669 15 6 8.3741 -3.8473 1.1201 16 7 8.6136 -4.7008 2.1354 17 8 9.2714 -3.1587 0.6823 18 6 6.0337 -2.8653 1.3455 19 16 2.5413 -1.4261 0.0001 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5143 0.8897 22 1 -0.3633 0.5135 -0.8902 23 1 1.6097 2.8211 -1.0285 24 1 0.0690 3.3763 0.7107 25 1 2.4180 5.0081 0.8563 26 1 3.1204 3.1648 2.2803 27 1 5.9755 -0.2622 0.0009 28 1 7.6127 -1.9055 -0.5258 29 1 6.8135 -3.1412 -1.5914 30 1 9.5035 -4.7639 2.5163 31 1 7.8950 -5.2486 2.4882 32 1 5.2943 -3.4310 1.9123 33 1 6.5411 -2.1099 1.9454 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_11684968_15704122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:01 Heat of formation + Delta-G solvation = 2.343094 kcal Electronic energy + Delta-G solvation = -18219.339600 eV Core-core repulsion = 15181.086816 eV Total energy + Delta-G solvation = -3038.252783 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45753 -40.90310 -39.06602 -37.76264 -35.39479 -34.57664 -32.57220 -29.43092 -27.07103 -26.77408 -25.56446 -24.23796 -22.42076 -20.92580 -19.92612 -19.40069 -18.64993 -18.01626 -17.76313 -17.29614 -16.53817 -16.33085 -16.18401 -15.76902 -15.51825 -15.25113 -14.53675 -14.16612 -14.13747 -13.92620 -13.58404 -13.43449 -13.30724 -13.11212 -12.48590 -12.37618 -12.24635 -11.87362 -11.63743 -11.05815 -10.90103 -10.67590 -10.66811 -10.46725 -10.00477 -8.59751 -4.79568 -0.01453 0.15516 0.72909 1.26832 1.57894 1.59183 1.84099 1.87738 2.02780 2.66326 3.10405 3.33862 3.39070 3.64391 3.80974 3.89644 4.12837 4.23558 4.35093 4.39444 4.43302 4.63927 4.70809 4.84398 4.86564 4.91121 4.97412 5.04768 5.19298 5.34164 5.70490 5.87494 6.31039 6.46599 6.62479 6.90588 7.33721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.254 4.254 3 C 0.084 3.916 4 C -0.040 4.040 5 O -0.545 6.545 6 Si 0.770 3.230 7 N -0.563 5.563 8 C 0.310 3.690 9 N -0.678 5.678 10 C 0.129 3.871 11 H 0.126 0.874 12 C -0.122 4.122 13 C -0.128 4.128 14 H 0.154 0.846 15 C 0.522 3.478 16 N -0.839 5.839 17 O -0.596 6.596 18 C -0.133 4.133 19 S 0.129 5.871 20 H 0.066 0.934 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.398 0.602 25 H -0.273 1.273 26 H -0.321 1.321 27 H 0.415 0.585 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.404 0.596 31 H 0.419 0.581 32 H 0.106 0.894 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 -5.352 -0.266 5.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.376 4.376 3 C -0.045 4.045 4 C -0.152 4.152 5 O -0.355 6.355 6 Si 0.676 3.324 7 N -0.291 5.291 8 C -0.062 4.062 9 N -0.317 5.317 10 C 0.024 3.976 11 H 0.143 0.857 12 C -0.161 4.161 13 C -0.149 4.149 14 H 0.172 0.828 15 C 0.307 3.693 16 N -0.402 5.402 17 O -0.477 6.477 18 C -0.172 4.172 19 S 0.378 5.622 20 H 0.085 0.915 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.118 0.882 24 H 0.249 0.751 25 H -0.200 1.200 26 H -0.250 1.250 27 H 0.254 0.746 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.235 0.765 31 H 0.250 0.750 32 H 0.124 0.876 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.209 -5.808 0.053 5.933 hybrid contribution -0.704 1.175 0.658 1.520 sum -1.914 -4.633 0.711 5.063 Atomic orbital electron populations 1.20054 0.85742 1.01879 1.03480 1.25418 1.02264 0.93359 1.16602 1.19071 0.86788 0.96000 1.02629 1.23983 0.92007 0.96821 1.02420 1.86509 1.32893 1.36630 1.79443 0.93027 0.86813 0.73904 0.78683 1.65630 1.17135 1.17638 1.28683 1.23525 0.92900 0.91380 0.98349 1.44124 1.01062 1.07417 1.79131 1.22796 0.98469 0.78804 0.97576 0.85677 1.23225 0.95266 0.98429 0.99158 1.22621 0.91832 1.02192 0.98297 0.82845 1.20845 0.90655 0.78309 0.79476 1.43830 1.16598 1.43216 1.36538 1.90754 1.48205 1.45872 1.62873 1.23516 0.98155 0.98575 0.96979 1.83582 0.95312 1.09414 1.73931 0.91550 0.90248 0.90671 0.88161 0.75084 1.19961 1.24998 0.74593 0.89657 0.88614 0.76522 0.74985 0.87582 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.13 8.91 71.24 0.63 0.50 16 2 C -0.25 -1.50 6.50 24.58 0.16 -1.34 16 3 C 0.08 0.64 5.96 41.41 0.25 0.88 16 4 C -0.04 -0.13 2.93 71.24 0.21 0.07 16 5 O -0.54 -1.12 9.80 -148.98 -1.46 -2.58 16 6 Si 0.77 3.45 32.08 68.60 2.20 5.65 16 7 N -0.56 -4.44 8.94 -189.86 -1.70 -6.14 16 8 C 0.31 1.30 8.24 179.32 1.48 2.78 16 9 N -0.68 0.32 5.52 -327.62 -1.81 -1.49 16 10 C 0.13 -0.71 4.23 45.58 0.19 -0.51 16 11 H 0.13 -0.99 7.06 -2.38 -0.02 -1.01 16 12 C -0.12 0.53 7.15 31.12 0.22 0.75 16 13 C -0.13 0.89 4.14 -11.01 -0.05 0.85 16 14 H 0.15 -2.04 8.14 -2.39 -0.02 -2.06 16 15 C 0.52 -0.09 7.63 87.66 0.67 0.58 16 16 N -0.84 5.76 8.87 -173.53 -1.54 4.22 16 17 O -0.60 -6.43 16.75 -3.03 -0.05 -6.49 16 18 C -0.13 0.93 7.45 31.18 0.23 1.17 16 19 S 0.13 0.23 21.69 -56.49 -1.23 -0.99 16 20 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 21 H 0.08 0.32 6.74 -2.39 -0.02 0.30 16 22 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 23 H 0.10 -0.06 7.96 -2.38 -0.02 -0.08 16 24 H 0.40 -2.50 8.74 -74.05 -0.65 -3.15 16 25 H -0.27 -1.51 7.11 99.48 0.71 -0.80 16 26 H -0.32 -4.60 7.11 99.48 0.71 -3.89 16 27 H 0.42 -0.23 8.85 -92.71 -0.82 -1.05 16 28 H 0.08 0.04 7.43 -2.39 -0.02 0.03 16 29 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.40 -2.69 8.93 -92.71 -0.83 -3.51 16 31 H 0.42 -5.67 8.83 -92.70 -0.82 -6.49 16 32 H 0.11 -1.13 8.14 -2.39 -0.02 -1.15 16 33 H 0.08 -0.27 8.09 -2.39 -0.02 -0.29 16 Total: 0.00 -22.28 294.32 -3.47 -25.75 By element: Atomic # 1 Polarization: -21.78 SS G_CDS: -1.89 Total: -23.66 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 4.00 Total: 5.73 kcal Atomic # 7 Polarization: 1.63 SS G_CDS: -5.05 Total: -3.41 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -1.51 Total: -9.06 kcal Atomic # 14 Polarization: 3.45 SS G_CDS: 2.20 Total: 5.65 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -1.23 Total: -0.99 kcal Total: -22.28 -3.47 -25.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_11684968_15704122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.090 kcal (2) G-P(sol) polarization free energy of solvation -22.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds