Wall clock time and date at job start Tue Mar 9 2021 13:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 116.99850 * 2 1 4 4 C 1.38761 * 120.02578 * 180.02562 * 3 2 1 5 5 C 1.38201 * 120.05659 * 179.97438 * 4 3 2 6 6 C 1.50692 * 119.94331 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.47194 * 244.97888 * 6 5 4 8 8 Si 1.86308 * 109.47206 * 4.97479 * 6 5 4 9 9 H 1.48502 * 109.46608 * 60.00039 * 8 6 5 10 10 H 1.48496 * 109.47246 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46936 * 299.99989 * 8 6 5 12 12 C 1.38146 * 120.11024 * 0.02562 * 5 4 3 13 13 C 1.38806 * 120.05694 * 0.02562 * 12 5 4 14 14 O 1.35896 * 120.03206 * 179.97438 * 13 12 5 15 15 C 1.35431 * 117.99636 * 76.85695 * 14 13 12 16 16 C 1.41838 * 120.51888 * 175.15118 * 15 14 13 17 17 C 1.44687 * 130.33071 * 0.02562 * 16 15 14 18 18 C 1.33571 * 114.56393 * 180.02562 * 17 16 15 19 19 C 1.43202 * 124.38977 * 179.97438 * 18 17 16 20 20 C 9.84243 * 90.57884 * 184.74489 * 3 1 2 21 21 Si 9.48255 * 111.61962 * 192.41989 * 13 1 2 22 22 C 1.86291 * 109.47431 * 0.39344 * 21 20 19 23 23 C 1.86299 * 109.46848 * 120.39353 * 21 20 19 24 24 C 1.86301 * 109.47070 * 240.38786 * 21 20 19 25 25 S 1.75350 * 111.22622 * 359.97438 * 18 17 16 26 26 C 1.40028 * 117.53160 * 180.02562 * 16 15 14 27 27 N 1.33814 * 119.03521 * 359.97438 * 26 16 15 28 28 C 1.31319 * 121.03869 * 0.02562 * 27 26 16 29 29 N 1.32084 * 122.21291 * 359.97438 * 28 27 26 30 30 C 1.38628 * 119.94254 * 0.25744 * 13 12 5 31 31 H 1.08995 * 109.47193 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47296 * 300.00373 * 1 2 3 33 33 H 1.09005 * 109.47406 * 60.00199 * 1 2 3 34 34 H 1.07997 * 119.96897 * 359.97438 * 4 3 2 35 35 H 1.08999 * 109.47890 * 124.97684 * 6 5 4 36 36 H 0.96701 * 114.00367 * 59.99670 * 7 6 5 37 37 H 1.08006 * 119.97332 * 180.02562 * 12 5 4 38 38 H 1.07994 * 122.71480 * 0.02562 * 17 16 15 39 39 H 1.08998 * 109.47390 * 59.99407 * 22 21 20 40 40 H 1.09001 * 109.47755 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.47104 * 299.99637 * 22 21 20 42 42 H 1.08994 * 109.47613 * 59.99908 * 23 21 20 43 43 H 1.09008 * 109.47160 * 180.02562 * 23 21 20 44 44 H 1.09001 * 109.47359 * 299.99695 * 23 21 20 45 45 H 1.09002 * 109.46997 * 60.00650 * 24 21 20 46 46 H 1.09008 * 109.47266 * 179.97438 * 24 21 20 47 47 H 1.08994 * 109.47291 * 300.00030 * 24 21 20 48 48 H 1.08000 * 118.89282 * 179.71881 * 28 27 26 49 49 H 1.08004 * 120.05954 * 179.69691 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4316 1.2842 -0.0005 5 6 4.0596 2.5152 -0.0011 6 6 5.5646 2.5919 -0.0022 7 8 6.0123 3.1852 1.2182 8 14 6.2737 0.8758 -0.1550 9 1 5.8084 0.2592 -1.4233 10 1 7.7567 0.9512 -0.1556 11 1 5.8210 0.0492 0.9926 12 6 3.3101 3.6757 -0.0005 13 6 1.9237 3.6078 0.0011 14 8 1.1868 4.7496 0.0021 15 6 1.0692 5.4314 -1.1621 16 6 0.2306 6.5722 -1.2472 17 6 -0.5958 7.2040 -0.2416 18 6 -1.2664 8.2775 -0.6683 19 6 -2.1438 9.0606 0.1488 20 6 -2.8642 9.7022 0.8141 21 14 -4.0293 10.7407 1.8992 22 6 -3.2464 12.3956 2.2438 23 6 -5.6467 10.9921 1.0096 24 6 -4.3367 9.8521 3.5075 25 16 -0.9331 8.6038 -2.3586 26 6 0.1551 7.2294 -2.4814 27 7 0.8676 6.7595 -3.5121 28 6 1.6297 5.6982 -3.3805 29 7 1.7346 5.0439 -2.2379 30 6 1.2913 2.3741 0.0075 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 4.0197 0.3784 -0.0005 35 1 5.8970 3.1986 -0.8445 36 1 5.7521 2.6973 2.0115 37 1 3.8032 4.6366 -0.0014 38 1 -0.6648 6.8373 0.7718 39 1 -3.0665 12.9155 1.3028 40 1 -3.9142 12.9910 2.8664 41 1 -2.3000 12.2486 2.7643 42 1 -6.1049 10.0239 0.8080 43 1 -6.3147 11.5880 1.6316 44 1 -5.4669 11.5120 0.0686 45 1 -3.3904 9.7050 4.0280 46 1 -5.0045 10.4478 4.1299 47 1 -4.7948 8.8839 3.3058 48 1 2.1864 5.3462 -4.2364 49 1 0.2127 2.3191 0.0138 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_11759146_17567452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:07 Heat of formation + Delta-G solvation = 6.073118 kcal Electronic energy + Delta-G solvation = -32632.062803 eV Core-core repulsion = 28162.925779 eV Total energy + Delta-G solvation = -4469.137023 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 414.103 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.69022 -41.53651 -40.22568 -38.97757 -37.76987 -37.01128 -34.47395 -33.91288 -32.34525 -31.40391 -30.41682 -29.66133 -28.52302 -28.51185 -28.50680 -26.80367 -26.56533 -25.85550 -23.77847 -22.99156 -22.52900 -20.94730 -20.29415 -18.93706 -18.40278 -18.14340 -17.48669 -17.39678 -17.12752 -16.96171 -16.82958 -16.71270 -16.46903 -16.14322 -15.73752 -15.48036 -15.35348 -15.24339 -14.82399 -14.36105 -14.34636 -14.28574 -14.14466 -14.07677 -13.90254 -13.60420 -13.40495 -13.39155 -13.38136 -13.18409 -13.12014 -12.64222 -12.63393 -12.38887 -12.28047 -12.21927 -12.16472 -12.12211 -12.01155 -11.75476 -11.66135 -11.36350 -10.93655 -10.81093 -10.60735 -10.49073 -10.05036 -9.87668 -9.37331 -9.18412 -0.95141 -0.31238 -0.25471 -0.17774 0.17574 0.48784 0.57766 1.08812 1.39099 1.41765 1.48460 1.50267 1.55578 1.61424 1.89262 2.10143 2.25321 2.33057 2.44014 2.53253 2.60028 2.79424 3.09757 3.24677 3.34529 3.44937 3.55544 3.73914 3.83180 3.94668 3.97714 4.09838 4.11752 4.19826 4.24541 4.36231 4.47312 4.52478 4.62290 4.62505 4.64772 4.66633 4.67038 4.67341 4.69197 4.80505 4.86716 4.96451 5.09824 5.21780 5.33768 5.36682 5.46076 5.46694 5.52967 6.01017 6.23441 6.47160 6.47773 6.81849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.149 3.851 4 C -0.149 4.149 5 C -0.068 4.068 6 C -0.080 4.080 7 O -0.535 6.535 8 Si 0.948 3.052 9 H -0.246 1.246 10 H -0.251 1.251 11 H -0.249 1.249 12 C -0.112 4.112 13 C 0.124 3.876 14 O -0.233 6.233 15 C 0.420 3.580 16 C -0.188 4.188 17 C -0.062 4.062 18 C -0.084 4.084 19 C -0.128 4.128 20 C -0.354 4.354 21 Si 1.145 2.855 22 C -0.453 4.453 23 C -0.453 4.453 24 C -0.453 4.453 25 S 0.221 5.779 26 C 0.108 3.892 27 N -0.505 5.505 28 C 0.357 3.643 29 N -0.565 5.565 30 C -0.198 4.198 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.378 0.622 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.213 0.787 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -0.039 2.208 3.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.104 3.896 4 C -0.168 4.168 5 C -0.068 4.068 6 C -0.191 4.191 7 O -0.340 6.340 8 Si 0.770 3.230 9 H -0.170 1.170 10 H -0.175 1.175 11 H -0.172 1.172 12 C -0.131 4.131 13 C 0.082 3.918 14 O -0.135 6.135 15 C 0.227 3.773 16 C -0.203 4.203 17 C -0.092 4.092 18 C -0.199 4.199 19 C -0.129 4.129 20 C -0.392 4.392 21 Si 1.331 2.669 22 C -0.561 4.561 23 C -0.561 4.561 24 C -0.561 4.561 25 S 0.485 5.515 26 C -0.143 4.143 27 N -0.225 5.225 28 C 0.066 3.934 29 N -0.296 5.296 30 C -0.217 4.217 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.225 0.775 37 H 0.153 0.847 38 H 0.177 0.823 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.229 0.771 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.690 0.168 0.087 2.697 hybrid contribution -0.376 -0.968 1.662 1.960 sum -3.066 -0.800 1.748 3.619 Atomic orbital electron populations 1.23169 0.77609 1.04663 1.01673 1.86125 1.21984 1.25866 1.88343 1.18522 0.91648 0.83948 0.95532 1.20416 0.91950 0.98093 1.06303 1.19915 0.96493 0.91712 0.98722 1.25024 0.91145 1.11743 0.91137 1.86543 1.78248 1.54332 1.14891 0.85693 0.80628 0.74454 0.82180 1.16989 1.17484 1.17236 1.20991 0.91639 0.99383 1.01082 1.18163 0.89458 0.83211 1.01006 1.84608 1.66468 1.34935 1.27492 1.20033 0.86343 0.86009 0.84963 1.19519 1.05144 0.99474 0.96126 1.20866 0.94577 0.93754 1.00002 1.19542 1.03245 0.99706 0.97420 1.19449 0.97098 0.98267 0.98126 1.36220 1.01681 1.00547 1.00771 0.77093 0.62731 0.63731 0.63382 1.26119 1.07840 1.16585 1.05559 1.26118 1.16040 1.05320 1.08606 1.26114 1.05453 1.08563 1.15934 1.84561 1.40000 1.23461 1.03454 1.23951 0.99457 0.99680 0.91193 1.68103 1.09525 1.14878 1.30026 1.24829 0.90249 0.85045 0.93309 1.68079 1.26120 1.34860 1.00493 1.21189 1.01010 0.90858 1.08640 0.87566 0.92255 0.92370 0.84628 0.85871 0.77472 0.84694 0.82252 0.90802 0.90241 0.90804 0.90819 0.90233 0.90805 0.90810 0.90244 0.90830 0.77084 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.31 -0.48 10.50 -19.43 -0.20 -0.68 16 3 C 0.15 0.27 6.68 -39.23 -0.26 0.01 16 4 C -0.15 -0.19 8.60 -39.40 -0.34 -0.53 16 5 C -0.07 -0.06 5.35 -104.67 -0.56 -0.62 16 6 C -0.08 0.03 2.80 36.00 0.10 0.13 16 7 O -0.54 -0.12 12.83 -35.23 -0.45 -0.58 16 8 Si 0.95 -0.51 25.13 -169.99 -4.27 -4.78 16 9 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 10 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 11 H -0.25 0.10 7.04 56.52 0.40 0.50 16 12 C -0.11 -0.22 9.22 -39.41 -0.36 -0.58 16 13 C 0.12 0.32 5.18 -39.23 -0.20 0.11 16 14 O -0.23 -0.73 9.94 -2.17 -0.02 -0.76 16 15 C 0.42 1.45 7.52 -15.98 -0.12 1.33 16 16 C -0.19 -0.64 6.08 -105.31 -0.64 -1.28 16 17 C -0.06 -0.16 10.19 -38.67 -0.39 -0.55 16 18 C -0.08 -0.25 6.15 -39.29 -0.24 -0.49 16 19 C -0.13 -0.37 13.63 -38.86 -0.53 -0.90 16 20 C -0.35 -0.32 12.14 29.53 0.36 0.04 16 21 Si 1.15 -3.82 14.26 -169.99 -2.42 -6.24 16 22 C -0.45 1.21 8.65 101.05 0.87 2.08 16 23 C -0.45 1.24 8.65 101.05 0.87 2.11 16 24 C -0.45 1.25 8.65 101.05 0.87 2.12 16 25 S 0.22 0.53 23.16 -107.50 -2.49 -1.96 16 26 C 0.11 0.39 7.69 -16.02 -0.12 0.27 16 27 N -0.51 -1.77 10.47 -13.26 -0.14 -1.91 16 28 C 0.36 0.65 12.26 -92.31 -1.13 -0.49 16 29 N -0.56 -1.69 9.18 -14.16 -0.13 -1.82 16 30 C -0.20 -0.34 8.98 -39.28 -0.35 -0.69 16 31 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16 32 H 0.06 -0.14 7.64 -51.93 -0.40 -0.54 16 33 H 0.06 -0.12 7.68 -51.93 -0.40 -0.52 16 34 H 0.14 0.04 4.85 -52.49 -0.25 -0.22 16 35 H 0.12 -0.14 7.96 -51.93 -0.41 -0.56 16 36 H 0.38 -1.14 8.70 45.56 0.40 -0.74 16 37 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 38 H 0.16 0.17 8.06 -52.49 -0.42 -0.26 16 39 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 40 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 41 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 42 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 43 H 0.08 -0.27 7.96 -51.92 -0.41 -0.68 16 44 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 45 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 46 H 0.08 -0.27 7.96 -51.92 -0.41 -0.68 16 47 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 48 H 0.21 -0.42 8.06 -52.49 -0.42 -0.84 16 49 H 0.14 0.04 6.30 -52.48 -0.33 -0.29 16 LS Contribution 442.09 15.07 6.66 6.66 Total: 0.00 -8.15 442.09 -10.27 -18.42 By element: Atomic # 1 Polarization: -3.77 SS G_CDS: -5.61 Total: -9.39 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.19 Total: 3.03 kcal Atomic # 7 Polarization: -3.46 SS G_CDS: -0.27 Total: -3.73 kcal Atomic # 8 Polarization: -1.34 SS G_CDS: -0.68 Total: -2.02 kcal Atomic # 14 Polarization: -4.33 SS G_CDS: -6.70 Total: -11.03 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.49 Total: -1.96 kcal Total LS contribution 6.66 Total: 6.66 kcal Total: -8.15 -10.27 -18.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_11759146_17567452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.489 kcal (2) G-P(sol) polarization free energy of solvation -8.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds