Wall clock time and date at job start Tue Mar 9 2021 13:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33327 * 125.95264 * 2 1 4 4 C 1.50697 * 122.71183 * 359.97360 * 3 2 1 5 5 O 1.42897 * 109.46989 * 330.00064 * 4 3 2 6 6 Si 1.86295 * 109.47380 * 209.99895 * 4 3 2 7 7 N 1.32121 * 114.57961 * 179.97438 * 3 2 1 8 8 C 1.29685 * 116.86754 * 0.02562 * 7 3 2 9 9 N 1.38614 * 124.94941 * 179.97438 * 8 7 3 10 10 C 1.46499 * 119.99813 * 179.72084 * 9 8 7 11 11 C 1.53004 * 109.47198 * 180.27673 * 10 9 8 12 12 H 1.08996 * 112.84823 * 316.19572 * 11 10 9 13 13 C 1.53787 * 113.61355 * 87.50373 * 11 10 9 14 14 C 1.53783 * 87.08023 * 139.98452 * 13 11 10 15 15 H 1.08995 * 113.61720 * 89.11229 * 14 13 11 16 16 C 1.50700 * 113.68932 * 220.01015 * 14 13 11 17 17 C 1.38238 * 120.00086 * 37.25321 * 16 14 13 18 18 C 1.38241 * 119.99973 * 179.74594 * 17 16 14 19 19 C 1.38234 * 119.99485 * 0.55677 * 18 17 16 20 20 C 1.38236 * 120.00414 * 359.70333 * 19 18 17 21 21 C 1.38231 * 119.99828 * 217.53842 * 16 14 13 22 22 C 1.53782 * 113.61417 * 185.00090 * 11 10 9 23 23 S 1.70961 * 110.10182 * 0.24066 * 8 7 3 24 24 H 1.09000 * 109.46752 * 90.00363 * 1 2 3 25 25 H 1.08997 * 109.47552 * 210.00039 * 1 2 3 26 26 H 1.08995 * 109.47319 * 330.00556 * 1 2 3 27 27 H 1.09004 * 109.46891 * 89.99841 * 4 3 2 28 28 H 0.96700 * 114.00091 * 299.99491 * 5 4 3 29 29 H 1.48498 * 110.00063 * 179.97438 * 6 4 3 30 30 H 1.48496 * 110.00187 * 301.32107 * 6 4 3 31 31 H 0.97001 * 120.00338 * 0.02562 * 9 8 7 32 32 H 1.09009 * 109.47454 * 300.27442 * 10 9 8 33 33 H 1.08998 * 109.47492 * 60.27737 * 10 9 8 34 34 H 1.08998 * 113.61128 * 254.53330 * 13 11 10 35 35 H 1.08998 * 113.61325 * 25.42994 * 13 11 10 36 36 H 1.07999 * 119.99817 * 0.02562 * 17 16 14 37 37 H 1.07988 * 119.99892 * 180.27895 * 18 17 16 38 38 H 1.08000 * 119.99604 * 179.72274 * 19 18 17 39 39 H 1.08000 * 120.00088 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.00026 * 359.97438 * 21 16 14 41 41 H 1.09001 * 113.61616 * 334.56263 * 22 11 10 42 42 H 1.09000 * 113.61435 * 105.38746 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4816 2.5019 -0.6747 6 14 2.9327 3.6147 -0.8786 7 7 3.5850 0.8187 0.0005 8 6 3.9315 -0.4310 0.0005 9 7 5.2384 -0.8926 0.0005 10 6 5.5065 -2.3329 0.0066 11 6 7.0180 -2.5703 0.0122 12 1 7.5508 -1.9224 -0.6838 13 6 7.6317 -2.6002 1.4220 14 6 8.5101 -3.7624 0.9296 15 1 9.4519 -3.4401 0.4854 16 6 8.6881 -4.8600 1.9468 17 6 7.6364 -5.2165 2.7701 18 6 7.7981 -6.2270 3.6996 19 6 9.0149 -6.8729 3.8135 20 6 10.0682 -6.5127 2.9939 21 6 9.9048 -5.5062 2.0605 22 6 7.4091 -4.0530 -0.1040 23 16 2.5413 -1.4261 -0.0071 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6089 2.8217 1.0270 28 1 0.5242 2.2119 -1.5962 29 1 2.4031 5.0020 -0.8865 30 1 4.2561 3.5795 -0.2061 31 1 5.9756 -0.2621 0.0009 32 1 5.0651 -2.7809 0.8969 33 1 5.0707 -2.7874 -0.8831 34 1 8.1959 -1.7016 1.6716 35 1 6.9242 -2.8867 2.2001 36 1 6.6871 -4.7088 2.6840 37 1 6.9752 -6.5086 4.3396 38 1 9.1426 -7.6593 4.5427 39 1 11.0188 -7.0177 3.0827 40 1 10.7277 -5.2247 1.4202 41 1 6.6409 -4.7369 0.2571 42 1 7.7924 -4.3278 -1.0867 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_12130086_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:40 Heat of formation + Delta-G solvation = 63.746337 kcal Electronic energy + Delta-G solvation = -23012.065125 eV Core-core repulsion = 19664.829430 eV Total energy + Delta-G solvation = -3347.235695 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34543 -40.91380 -39.26017 -37.89370 -36.42942 -33.00853 -32.12410 -31.80610 -29.72994 -28.17223 -26.84219 -25.58738 -24.80787 -24.00682 -23.60452 -22.10663 -20.67782 -20.12573 -19.07928 -18.04277 -17.81542 -17.21905 -16.96982 -16.56931 -16.19975 -16.02306 -15.87494 -15.54486 -15.24610 -14.88323 -14.67856 -14.31660 -14.13289 -14.09815 -13.77161 -13.70813 -13.58869 -13.31368 -13.25365 -12.82702 -12.67288 -12.48855 -12.22320 -12.14296 -11.81351 -11.66126 -11.55346 -11.35817 -11.01871 -10.50792 -10.26439 -9.92834 -9.85039 -9.59922 -8.58282 -4.81807 0.08543 0.23050 0.39749 0.46963 0.84540 1.42878 1.88140 1.94793 1.99379 2.28675 2.79822 3.30754 3.35996 3.39666 3.48431 3.61700 3.81159 3.90296 3.94656 4.05893 4.08473 4.19023 4.23176 4.24909 4.36745 4.39587 4.51707 4.57347 4.58349 4.60267 4.66723 4.74076 4.81255 4.86553 4.95140 4.96576 5.06552 5.11819 5.16095 5.27397 5.35473 5.54637 5.59877 5.61063 5.69458 6.06954 6.29064 6.54101 7.01783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.240 4.240 3 C 0.068 3.932 4 C -0.034 4.034 5 O -0.536 6.536 6 Si 0.716 3.284 7 N -0.547 5.547 8 C 0.320 3.680 9 N -0.693 5.693 10 C 0.132 3.868 11 C -0.122 4.122 12 H 0.103 0.897 13 C -0.129 4.129 14 C -0.073 4.073 15 H 0.100 0.900 16 C -0.072 4.072 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.118 4.118 23 S 0.097 5.903 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.379 0.621 29 H -0.262 1.262 30 H -0.253 1.253 31 H 0.412 0.588 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 -3.691 -2.328 4.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.362 4.362 3 C -0.063 4.063 4 C -0.147 4.147 5 O -0.341 6.341 6 Si 0.617 3.383 7 N -0.274 5.274 8 C -0.052 4.052 9 N -0.334 5.334 10 C 0.008 3.992 11 C -0.141 4.141 12 H 0.121 0.879 13 C -0.166 4.166 14 C -0.091 4.091 15 H 0.118 0.882 16 C -0.072 4.072 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.156 4.156 23 S 0.346 5.654 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.137 0.863 28 H 0.226 0.774 29 H -0.188 1.188 30 H -0.177 1.177 31 H 0.250 0.750 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.911 -3.673 -1.693 4.473 hybrid contribution 0.018 0.560 0.685 0.885 sum 1.929 -3.113 -1.008 3.798 Atomic orbital electron populations 1.20204 0.86415 1.03111 1.02708 1.25105 1.01275 0.92586 1.17275 1.20125 0.86775 0.97121 1.02246 1.24511 0.92449 0.95572 1.02160 1.86502 1.28844 1.89635 1.29075 0.94075 0.77614 0.76421 0.90210 1.65971 1.17246 1.16653 1.27508 1.23281 0.91827 0.91481 0.98598 1.43956 1.01760 1.07249 1.80412 1.21595 0.96363 0.79191 1.02099 1.22747 0.93643 0.98683 0.99011 0.87922 1.23211 0.98820 0.98498 0.96059 1.21474 0.98627 0.93921 0.95066 0.88213 1.19687 0.93789 0.96989 0.96767 1.21000 0.98671 0.97761 0.96123 1.21180 0.97615 0.96275 0.98511 1.21205 0.93389 1.00091 0.99520 1.21196 0.99044 0.97441 0.95896 1.21084 0.96988 0.96595 0.98789 1.23013 0.98025 0.94855 0.99666 1.83979 0.96688 1.10688 1.74095 0.91069 0.92320 0.89059 0.86305 0.77356 1.18794 1.17660 0.74951 0.91323 0.91123 0.90850 0.89329 0.86161 0.86024 0.86062 0.86000 0.86103 0.89316 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.01 8.95 36.00 0.32 0.32 16 2 C -0.24 -0.42 6.50 -36.03 -0.23 -0.65 16 3 C 0.07 0.17 5.92 -84.18 -0.50 -0.33 16 4 C -0.03 -0.05 2.82 36.00 0.10 0.05 16 5 O -0.54 -0.14 9.90 -35.23 -0.35 -0.49 16 6 Si 0.72 0.91 32.08 -169.99 -5.45 -4.55 16 7 N -0.55 -1.90 8.95 -11.36 -0.10 -2.01 16 8 C 0.32 0.61 8.24 -87.68 -0.72 -0.11 16 9 N -0.69 0.30 5.71 -62.29 -0.36 -0.06 16 10 C 0.13 -0.31 5.37 -4.04 -0.02 -0.33 16 11 C -0.12 0.39 3.76 -89.80 -0.34 0.06 16 12 H 0.10 -0.36 8.14 -51.93 -0.42 -0.79 16 13 C -0.13 0.30 7.01 -25.91 -0.18 0.12 16 14 C -0.07 0.14 3.98 -90.95 -0.36 -0.22 16 15 H 0.10 -0.23 8.09 -51.93 -0.42 -0.65 16 16 C -0.07 0.01 5.29 -104.62 -0.55 -0.55 16 17 C -0.12 0.00 8.63 -39.58 -0.34 -0.34 16 18 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 19 C -0.12 -0.06 10.05 -39.58 -0.40 -0.45 16 20 C -0.12 -0.05 10.05 -39.58 -0.40 -0.45 16 21 C -0.12 -0.03 9.71 -39.58 -0.38 -0.42 16 22 C -0.12 0.33 7.11 -25.91 -0.18 0.15 16 23 S 0.10 0.09 22.32 -107.50 -2.40 -2.31 16 24 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 25 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 26 H 0.09 0.07 6.62 -51.93 -0.34 -0.28 16 27 H 0.12 0.22 7.96 -51.93 -0.41 -0.20 16 28 H 0.38 -1.19 8.68 45.56 0.40 -0.79 16 29 H -0.26 -0.96 7.11 56.52 0.40 -0.55 16 30 H -0.25 -1.20 7.11 56.52 0.40 -0.80 16 31 H 0.41 -0.38 8.60 -40.82 -0.35 -0.73 16 32 H 0.07 -0.16 7.84 -51.92 -0.41 -0.56 16 33 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 34 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 35 H 0.09 -0.17 6.06 -51.93 -0.31 -0.49 16 36 H 0.12 -0.17 6.65 -52.49 -0.35 -0.52 16 37 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 38 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 39 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 40 H 0.12 -0.14 8.05 -52.49 -0.42 -0.57 16 41 H 0.09 -0.24 7.69 -51.93 -0.40 -0.63 16 42 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 LS Contribution 355.85 15.07 5.36 5.36 Total: 0.00 -5.72 355.85 -13.92 -19.64 By element: Atomic # 1 Polarization: -5.98 SS G_CDS: -6.03 Total: -12.01 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -4.59 Total: -3.59 kcal Atomic # 7 Polarization: -1.61 SS G_CDS: -0.46 Total: -2.07 kcal Atomic # 8 Polarization: -0.14 SS G_CDS: -0.35 Total: -0.49 kcal Atomic # 14 Polarization: 0.91 SS G_CDS: -5.45 Total: -4.55 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.40 Total: -2.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -5.72 -13.92 -19.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_12130086_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.385 kcal (2) G-P(sol) polarization free energy of solvation -5.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds