Wall clock time and date at job start Tue Mar 9 2021 13:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86301 * 109.46904 * 2 1 4 4 C 1.86296 * 109.47391 * 239.99516 * 2 1 3 5 5 C 1.90003 * 109.46780 * 119.99657 * 2 1 3 6 6 C 3.07399 * 109.46777 * 119.99561 * 2 1 3 7 7 C 4.50598 * 109.46907 * 119.99682 * 2 1 3 8 8 C 1.33569 * 124.39351 * 50.70376 * 7 6 5 9 9 C 1.44684 * 114.57076 * 180.02562 * 8 7 6 10 10 C 1.41839 * 130.33409 * 179.97438 * 9 8 7 11 11 O 1.35418 * 120.52231 * 0.04585 * 10 9 8 12 12 C 1.35952 * 118.00088 * 174.92476 * 11 10 9 13 13 C 1.38680 * 120.05106 * 265.65916 * 12 11 10 14 14 C 1.38201 * 120.00968 * 179.97438 * 13 12 11 15 15 C 1.38215 * 120.11902 * 359.97288 * 14 13 12 16 16 C 1.50703 * 119.94691 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47073 * 255.00025 * 16 15 14 18 18 Si 1.86301 * 109.46791 * 135.00511 * 16 15 14 19 19 H 1.48489 * 109.47583 * 59.99869 * 18 16 15 20 20 H 1.48501 * 109.46751 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47051 * 299.99266 * 18 16 15 22 22 C 1.38495 * 120.10509 * 0.02787 * 15 14 13 23 23 F 1.35097 * 120.00816 * 180.02562 * 22 15 14 24 24 C 1.38508 * 119.98461 * 359.73943 * 22 15 14 25 25 F 1.35093 * 120.05803 * 180.25386 * 24 22 15 26 26 N 1.32309 * 118.95617 * 180.02562 * 10 9 8 27 27 C 1.32085 * 121.22025 * 359.97438 * 26 10 9 28 28 N 1.31327 * 122.21308 * 0.02562 * 27 26 10 29 29 C 1.33809 * 121.04312 * 359.97438 * 28 27 26 30 30 S 1.75353 * 124.38617 * 231.00295 * 7 6 5 31 31 H 1.09000 * 109.47451 * 300.00603 * 1 2 3 32 32 H 1.09006 * 109.46877 * 60.00137 * 1 2 3 33 33 H 1.09000 * 109.47243 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47056 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47310 * 299.99538 * 3 2 1 36 36 H 1.09002 * 109.47401 * 59.99978 * 3 2 1 37 37 H 1.09000 * 109.47117 * 300.00310 * 4 2 1 38 38 H 1.09006 * 109.46827 * 60.00316 * 4 2 1 39 39 H 1.08996 * 109.47193 * 179.97438 * 4 2 1 40 40 H 1.08006 * 122.71698 * 0.06015 * 8 7 6 41 41 H 1.07998 * 119.99619 * 359.95389 * 13 12 11 42 42 H 1.08005 * 119.93775 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.47328 * 15.00009 * 16 15 14 44 44 H 0.96699 * 114.00218 * 300.00569 * 17 16 15 45 45 H 1.08001 * 118.89639 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5210 5 6 2.4962 -0.8956 1.5515 6 6 2.8875 -1.4489 2.5101 7 6 3.3648 -2.1240 3.6793 8 6 3.4485 -3.4513 3.8029 9 6 3.9608 -3.9057 5.0774 10 6 4.1848 -5.2203 5.5608 11 8 3.9089 -6.2949 4.7844 12 6 4.2406 -7.5257 5.2569 13 6 5.4549 -8.0988 4.9101 14 6 5.7914 -9.3498 5.3913 15 6 4.9197 -10.0320 6.2191 16 6 5.2909 -11.3957 6.7422 17 8 4.5482 -12.3939 6.0391 18 14 4.8948 -11.4924 8.5600 19 1 3.4418 -11.2630 8.7630 20 1 5.2599 -12.8365 9.0753 21 1 5.6666 -10.4552 9.2907 22 6 3.7058 -9.4643 6.5686 23 9 2.8555 -10.1326 7.3783 24 6 3.3662 -8.2087 6.0926 25 9 2.1847 -7.6513 6.4368 26 7 4.6679 -5.3799 6.7821 27 6 4.9427 -4.3416 7.5509 28 7 4.7536 -3.1050 7.1511 29 6 4.2687 -2.8404 5.9324 30 16 3.9083 -1.3153 5.1372 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 3.5740 1.7565 0.0005 35 1 2.1207 2.2703 -0.8900 36 1 2.1206 2.2704 0.8900 37 1 2.1207 -1.9060 -1.5210 38 1 2.1208 -0.3645 -2.4111 39 1 3.5740 -0.8779 -1.5212 40 1 3.1578 -4.1304 3.0150 41 1 6.1375 -7.5675 4.2635 42 1 6.7376 -9.7948 5.1208 43 1 6.3574 -11.5642 6.5932 44 1 3.5893 -12.3056 6.1273 45 1 5.3354 -4.5153 8.5418 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_13025874_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:55 Heat of formation + Delta-G solvation = -29.076416 kcal Electronic energy + Delta-G solvation = -33528.568111 eV Core-core repulsion = 28593.218749 eV Total energy + Delta-G solvation = -4935.349362 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 420.069 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.01218 -50.06963 -42.87117 -41.27072 -39.65912 -37.96144 -37.53156 -34.68507 -34.07707 -32.34838 -31.75050 -30.67068 -29.43466 -28.27108 -28.26491 -27.61667 -26.36621 -25.72893 -24.42681 -23.48040 -23.09424 -21.42563 -20.71590 -19.43442 -18.93719 -18.68718 -18.26745 -17.95291 -17.68048 -17.55666 -17.09774 -17.04058 -16.61700 -16.47002 -16.24334 -15.91986 -15.73815 -15.55537 -15.42065 -15.37222 -14.80272 -14.47385 -14.33365 -14.13992 -14.10946 -13.86576 -13.81312 -13.72538 -13.30842 -13.22300 -13.15099 -13.14081 -12.96274 -12.82442 -12.58611 -12.42967 -12.38561 -12.23276 -12.11984 -11.72020 -11.58086 -11.37980 -10.86125 -10.80514 -10.72605 -10.66417 -10.10403 -10.08435 -10.05640 -9.40439 -1.15818 -0.74599 -0.55651 -0.43163 -0.41504 0.27484 0.39427 1.04534 1.17072 1.41076 1.44492 1.47437 1.60852 1.70991 1.89156 2.06296 2.22754 2.32206 2.38633 2.45433 2.54217 2.62444 2.91423 2.95147 3.04400 3.15773 3.21622 3.39060 3.51157 3.63782 3.66209 3.96170 4.15597 4.21696 4.45846 4.47271 4.61921 4.64148 4.67971 4.79441 4.85665 4.86230 4.89178 4.91341 4.91607 4.91991 4.94275 5.19143 5.29698 5.61475 5.70740 5.71484 5.75464 6.33338 6.46787 6.58195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.207 2.793 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.339 4.339 6 C -0.179 4.179 7 C -0.088 4.088 8 C -0.067 4.067 9 C -0.195 4.195 10 C 0.410 3.590 11 O -0.229 6.229 12 C 0.064 3.936 13 C -0.080 4.080 14 C -0.048 4.048 15 C -0.110 4.110 16 C -0.066 4.066 17 O -0.540 6.540 18 Si 0.947 3.053 19 H -0.253 1.253 20 H -0.263 1.263 21 H -0.257 1.257 22 C 0.058 3.942 23 F -0.121 7.121 24 C 0.058 3.942 25 F -0.135 7.135 26 N -0.575 5.575 27 C 0.357 3.643 28 N -0.518 5.518 29 C 0.093 3.907 30 S 0.233 5.767 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.171 0.829 41 H 0.175 0.825 42 H 0.197 0.803 43 H 0.161 0.839 44 H 0.386 0.614 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 1.021 -5.202 6.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.388 2.612 3 C -0.571 4.571 4 C -0.570 4.570 5 C -0.374 4.374 6 C -0.181 4.181 7 C -0.204 4.204 8 C -0.097 4.097 9 C -0.209 4.209 10 C 0.216 3.784 11 O -0.131 6.131 12 C 0.020 3.980 13 C -0.098 4.098 14 C -0.066 4.066 15 C -0.111 4.111 16 C -0.177 4.177 17 O -0.346 6.346 18 Si 0.772 3.228 19 H -0.177 1.177 20 H -0.188 1.188 21 H -0.181 1.181 22 C 0.038 3.962 23 F -0.099 7.099 24 C 0.037 3.963 25 F -0.114 7.114 26 N -0.306 5.306 27 C 0.067 3.933 28 N -0.238 5.238 29 C -0.157 4.157 30 S 0.498 5.502 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.188 0.812 41 H 0.193 0.807 42 H 0.214 0.786 43 H 0.179 0.821 44 H 0.235 0.765 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 4.155 2.088 -3.211 5.651 hybrid contribution -1.587 -1.298 -0.348 2.080 sum 2.568 0.791 -3.559 4.459 Atomic orbital electron populations 1.26258 1.20523 1.04993 1.05458 0.76326 0.64804 0.63351 0.56692 1.26231 1.06766 1.18574 1.05525 1.26219 1.06749 1.08577 1.15451 1.37742 0.97712 0.97989 1.03936 1.19941 1.01897 1.01212 0.95037 1.19694 1.08377 0.95430 0.96876 1.20976 0.98835 0.94171 0.95728 1.19604 1.11844 0.91452 0.98009 1.20221 0.86238 0.84843 0.87088 1.84686 1.75872 1.11472 1.41040 1.18597 0.95467 0.84219 0.99668 1.21647 0.92585 0.96617 0.98992 1.21364 1.00660 0.92047 0.92507 1.20632 0.92009 0.99186 0.99301 1.24918 1.02727 0.83355 1.06697 1.86548 1.23467 1.50343 1.74291 0.85950 0.81175 0.80675 0.75040 1.17712 1.18755 1.18080 1.17576 0.91327 0.90496 0.96798 1.91605 1.70082 1.78674 1.69554 1.18091 0.84387 0.93442 1.00392 1.91510 1.44027 1.85080 1.90778 1.68103 1.20319 1.37788 1.04381 1.25523 0.88301 0.80169 0.99320 1.68158 1.17487 1.24772 1.13388 1.24192 0.98501 0.98874 0.94175 1.84425 1.63275 0.99725 1.02766 0.91207 0.89146 0.91181 0.91007 0.89122 0.91116 0.91073 0.89164 0.91012 0.81196 0.80712 0.78580 0.82114 0.76517 0.73745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.76 8.65 113.37 0.98 3.75 16 2 Si 1.21 -8.96 14.26 68.60 0.98 -7.98 16 3 C -0.46 2.97 8.65 113.37 0.98 3.95 16 4 C -0.46 3.03 8.65 113.37 0.98 4.01 16 5 C -0.34 -0.69 12.14 74.32 0.90 0.22 16 6 C -0.18 -1.21 13.64 30.02 0.41 -0.80 16 7 C -0.09 -0.63 6.15 22.46 0.14 -0.49 16 8 C -0.07 -0.43 10.19 22.86 0.23 -0.20 16 9 C -0.19 -1.57 6.08 -20.31 -0.12 -1.69 16 10 C 0.41 3.18 7.58 85.51 0.65 3.82 16 11 O -0.23 -1.51 9.80 -31.15 -0.31 -1.81 16 12 C 0.06 0.24 5.00 22.53 0.11 0.35 16 13 C -0.08 0.29 9.98 22.37 0.22 0.51 16 14 C -0.05 0.33 9.66 22.26 0.21 0.55 16 15 C -0.11 0.28 4.78 -19.81 -0.09 0.19 16 16 C -0.07 0.29 2.81 71.24 0.20 0.49 16 17 O -0.54 0.99 12.88 -148.98 -1.92 -0.93 16 18 Si 0.95 -0.27 26.09 68.60 1.79 1.52 16 19 H -0.25 -0.88 5.29 99.48 0.53 -0.35 16 20 H -0.26 -0.54 7.11 99.48 0.71 0.17 16 21 H -0.26 -0.32 7.11 99.48 0.71 0.38 16 22 C 0.06 0.19 6.62 22.40 0.15 0.34 16 23 F -0.12 -0.67 12.51 44.97 0.56 -0.11 16 24 C 0.06 0.38 7.31 22.49 0.16 0.55 16 25 F -0.14 -1.60 17.03 44.97 0.77 -0.83 16 26 N -0.57 -3.70 9.42 -311.70 -2.94 -6.64 16 27 C 0.36 1.35 12.26 180.94 2.22 3.57 16 28 N -0.52 -3.93 10.47 -195.88 -2.05 -5.98 16 29 C 0.09 0.78 7.69 84.83 0.65 1.43 16 30 S 0.23 1.39 23.16 -56.49 -1.31 0.08 16 31 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 32 H 0.09 -0.71 7.96 -2.38 -0.02 -0.73 16 33 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 34 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.09 -0.75 7.96 -2.39 -0.02 -0.77 16 36 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 37 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 38 H 0.09 -0.76 7.96 -2.38 -0.02 -0.78 16 39 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 40 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 41 H 0.18 -1.46 8.06 -2.91 -0.02 -1.48 16 42 H 0.20 -2.90 8.00 -2.91 -0.02 -2.92 16 43 H 0.16 -1.70 7.77 -2.39 -0.02 -1.72 16 44 H 0.39 -2.10 8.42 -74.06 -0.62 -2.73 16 45 H 0.25 -1.16 8.06 -2.91 -0.02 -1.18 16 Total: 0.00 -21.69 423.00 5.60 -16.09 By element: Atomic # 1 Polarization: -14.99 SS G_CDS: 1.03 Total: -13.96 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 8.99 Total: 20.54 kcal Atomic # 7 Polarization: -7.63 SS G_CDS: -4.99 Total: -12.62 kcal Atomic # 8 Polarization: -0.52 SS G_CDS: -2.22 Total: -2.74 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 1.33 Total: -0.94 kcal Atomic # 14 Polarization: -9.22 SS G_CDS: 2.77 Total: -6.46 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.31 Total: 0.08 kcal Total: -21.69 5.60 -16.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_13025874_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.983 kcal (2) G-P(sol) polarization free energy of solvation -21.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds