Wall clock time and date at job start Tue Mar 9 2021 13:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86300 * 109.47239 * 2 1 4 4 C 1.86309 * 109.46797 * 240.00247 * 2 1 3 5 5 C 1.89991 * 109.47362 * 120.00460 * 2 1 3 6 6 C 3.07390 * 109.47367 * 120.00553 * 2 1 3 7 7 C 4.50600 * 109.47360 * 120.00363 * 2 1 3 8 8 C 1.33571 * 124.38660 * 267.36093 * 7 6 5 9 9 C 1.44687 * 114.56388 * 179.97438 * 8 7 6 10 10 C 1.41838 * 130.33107 * 180.02562 * 9 8 7 11 11 O 1.35431 * 120.51830 * 359.97438 * 10 9 8 12 12 C 1.35892 * 117.99404 * 175.14573 * 11 10 9 13 13 C 1.38738 * 120.05321 * 76.85877 * 12 11 10 14 14 C 1.38166 * 119.96692 * 179.97438 * 13 12 11 15 15 C 1.50701 * 119.96327 * 179.97438 * 14 13 12 16 16 O 1.42899 * 109.47105 * 64.99984 * 15 14 13 17 17 Si 1.86303 * 109.47332 * 184.99940 * 15 14 13 18 18 H 1.48505 * 109.46858 * 59.99807 * 17 15 14 19 19 H 1.48495 * 109.47513 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47199 * 300.00215 * 17 15 14 21 21 C 1.38223 * 120.07422 * 0.02562 * 14 13 12 22 22 C 1.38417 * 120.10125 * 359.97438 * 21 14 13 23 23 Cl 1.73599 * 119.98528 * 179.97438 * 22 21 14 24 24 C 1.38235 * 120.02886 * 359.72773 * 22 21 14 25 25 N 1.32293 * 118.95558 * 180.02562 * 10 9 8 26 26 C 1.32089 * 121.22289 * 359.93272 * 25 10 9 27 27 N 1.31319 * 122.21243 * 0.03486 * 26 25 10 28 28 C 1.33814 * 121.04292 * 359.97438 * 27 26 25 29 29 S 1.75340 * 124.38687 * 87.34891 * 7 6 5 30 30 H 1.09002 * 109.46905 * 299.99419 * 1 2 3 31 31 H 1.08994 * 109.47537 * 59.99592 * 1 2 3 32 32 H 1.08999 * 109.47435 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47088 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47392 * 300.00275 * 3 2 1 35 35 H 1.09002 * 109.46698 * 60.00454 * 3 2 1 36 36 H 1.08999 * 109.47121 * 300.00184 * 4 2 1 37 37 H 1.09008 * 109.46950 * 59.99826 * 4 2 1 38 38 H 1.08994 * 109.46867 * 179.97438 * 4 2 1 39 39 H 1.08004 * 122.71924 * 359.97438 * 8 7 6 40 40 H 1.07992 * 120.01745 * 0.02562 * 13 12 11 41 41 H 1.09000 * 109.47180 * 304.99937 * 15 14 13 42 42 H 0.96695 * 113.99914 * 60.00372 * 16 15 14 43 43 H 1.07997 * 119.95284 * 179.97438 * 21 14 13 44 44 H 1.07999 * 120.03327 * 180.27812 * 24 22 21 45 45 H 1.08000 * 118.89004 * 180.32046 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5213 5 6 2.4964 -0.8957 1.5512 6 6 2.8878 -1.4493 2.5097 7 6 3.3652 -2.1244 3.6789 8 6 3.1390 -1.7166 4.9306 9 6 3.7207 -2.5599 5.9523 10 6 3.6894 -2.4443 7.3656 11 8 3.0374 -1.4151 7.9572 12 6 2.9539 -1.4082 9.3135 13 6 4.0527 -1.0381 10.0754 14 6 3.9657 -1.0312 11.4543 15 6 5.1594 -0.6297 12.2818 16 8 5.4673 0.7444 12.0385 17 14 4.7716 -0.8687 14.0883 18 1 4.4517 -2.2967 14.3411 19 1 5.9481 -0.4737 14.9037 20 1 3.6060 -0.0270 14.4599 21 6 2.7852 -1.3932 12.0756 22 6 1.6871 -1.7630 11.3184 23 17 0.2063 -2.2177 12.1019 24 6 1.7676 -1.7654 9.9384 25 7 4.3079 -3.3569 8.0968 26 6 4.9477 -4.3664 7.5344 27 7 5.0060 -4.5195 6.2314 28 6 4.4120 -3.6487 5.4071 29 16 4.3221 -3.5934 3.6530 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.5741 1.7564 -0.0005 34 1 2.1207 2.2703 -0.8899 35 1 2.1207 2.2702 0.8901 36 1 2.1205 -1.9058 -1.5213 37 1 2.1205 -0.3643 -2.4113 38 1 3.5739 -0.8778 -1.5215 39 1 2.5681 -0.8293 5.1614 40 1 4.9753 -0.7547 9.5909 41 1 6.0150 -1.2475 12.0090 42 1 4.7493 1.3533 12.2592 43 1 2.7195 -1.3875 13.1536 44 1 0.9095 -2.0496 9.3474 45 1 5.4353 -5.0929 8.1675 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_13429472_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:05 Heat of formation + Delta-G solvation = 33.039495 kcal Electronic energy + Delta-G solvation = -30244.512946 eV Core-core repulsion = 25890.965291 eV Total energy + Delta-G solvation = -4353.547655 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 418.049 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.73455 -41.33504 -39.70865 -38.04541 -37.78748 -37.16748 -34.49724 -33.92766 -32.71459 -31.68465 -30.41035 -29.65946 -28.50842 -28.50656 -27.18397 -26.64900 -25.90615 -24.00021 -23.17492 -22.79818 -20.97152 -20.23745 -18.82761 -18.21803 -18.00561 -17.53705 -17.42237 -16.94658 -16.78822 -16.51206 -16.34676 -15.85643 -15.75921 -15.49824 -15.32710 -14.86627 -14.67774 -14.40491 -14.35705 -14.30057 -14.16458 -14.07821 -13.91266 -13.40083 -13.39128 -13.38207 -13.21141 -13.18289 -12.68619 -12.54534 -12.51533 -12.36476 -12.28416 -12.21805 -12.14510 -12.02763 -11.84503 -11.66246 -11.40196 -10.94699 -10.80699 -10.67952 -10.56973 -10.17784 -9.95066 -9.88605 -9.21246 -0.97594 -0.42914 -0.30048 -0.23994 -0.16588 0.46050 0.55664 0.85330 0.98432 1.31653 1.37785 1.40425 1.48186 1.49449 1.60973 1.80748 2.24965 2.29823 2.33271 2.43649 2.58204 2.74954 3.06322 3.20164 3.22929 3.38322 3.42203 3.62687 3.74571 3.81686 3.92870 4.07206 4.23631 4.28403 4.42326 4.62332 4.62700 4.63610 4.67040 4.67272 4.67336 4.69234 4.76386 4.78252 4.79373 4.91483 4.99779 5.21388 5.36925 5.46499 5.46675 5.48474 6.00371 6.38439 6.46242 6.77999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.146 2.854 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.353 4.353 6 C -0.129 4.129 7 C -0.082 4.082 8 C -0.062 4.062 9 C -0.186 4.186 10 C 0.418 3.582 11 O -0.230 6.230 12 C 0.098 3.902 13 C -0.071 4.071 14 C -0.094 4.094 15 C -0.079 4.079 16 O -0.534 6.534 17 Si 0.942 3.058 18 H -0.245 1.245 19 H -0.247 1.247 20 H -0.247 1.247 21 C -0.108 4.108 22 C -0.017 4.017 23 Cl -0.050 7.050 24 C -0.098 4.098 25 N -0.566 5.566 26 C 0.357 3.643 27 N -0.504 5.504 28 C 0.107 3.893 29 S 0.223 5.777 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.161 0.839 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.378 0.622 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 1.911 -1.732 2.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.331 2.669 3 C -0.561 4.561 4 C -0.561 4.561 5 C -0.391 4.391 6 C -0.131 4.131 7 C -0.198 4.198 8 C -0.093 4.093 9 C -0.201 4.201 10 C 0.224 3.776 11 O -0.131 6.131 12 C 0.056 3.944 13 C -0.090 4.090 14 C -0.095 4.095 15 C -0.190 4.190 16 O -0.339 6.339 17 Si 0.763 3.237 18 H -0.168 1.168 19 H -0.171 1.171 20 H -0.171 1.171 21 C -0.127 4.127 22 C -0.044 4.044 23 Cl -0.021 7.021 24 C -0.117 4.117 25 N -0.297 5.297 26 C 0.066 3.934 27 N -0.224 5.224 28 C -0.143 4.143 29 S 0.487 5.513 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.178 0.822 40 H 0.158 0.842 41 H 0.143 0.857 42 H 0.226 0.774 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.140 0.060 -1.605 1.612 hybrid contribution -1.358 1.331 0.894 2.101 sum -1.218 1.391 -0.711 1.981 Atomic orbital electron populations 1.26118 1.19793 1.05090 1.05084 0.77084 0.66115 0.64709 0.58997 1.26119 1.06798 1.18084 1.05085 1.26117 1.06802 1.08495 1.14683 1.36301 0.99348 0.99954 1.03520 1.19515 1.00178 0.99165 0.94207 1.19543 1.06382 1.00753 0.93101 1.20871 0.99594 1.00067 0.88733 1.19509 1.08379 1.00419 0.91770 1.20038 0.85677 0.84982 0.86857 1.84647 1.69080 1.40071 1.19345 1.18273 0.94026 1.01851 0.80287 1.21218 0.98142 0.96499 0.93122 1.20110 0.95243 1.00102 0.94001 1.25018 0.98267 0.86279 1.09427 1.86551 1.43520 1.14429 1.89443 0.85779 0.81214 0.82110 0.74557 1.16807 1.17087 1.17075 1.21086 0.91635 0.99478 1.00467 1.20475 0.89041 1.02888 0.92021 1.98417 1.32719 1.90765 1.80235 1.21036 0.98621 0.99136 0.92953 1.68059 1.15103 1.06244 1.40302 1.24822 0.89488 0.91361 0.87745 1.68101 1.21498 1.27947 1.04832 1.23961 0.96401 0.93034 1.00925 1.84579 1.51711 1.21259 0.93725 0.90818 0.90248 0.90815 0.90806 0.90250 0.90813 0.90799 0.90220 0.90796 0.82192 0.84185 0.85743 0.77420 0.84444 0.83715 0.77053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.25 8.65 101.05 0.87 2.12 16 2 Si 1.15 -3.89 14.26 -169.99 -2.42 -6.31 16 3 C -0.45 1.25 8.65 101.05 0.87 2.12 16 4 C -0.45 1.26 8.65 101.05 0.87 2.13 16 5 C -0.35 -0.28 12.14 29.55 0.36 0.08 16 6 C -0.13 -0.36 13.65 -38.83 -0.53 -0.89 16 7 C -0.08 -0.22 6.15 -39.29 -0.24 -0.47 16 8 C -0.06 -0.14 10.19 -38.67 -0.39 -0.53 16 9 C -0.19 -0.56 6.08 -105.31 -0.64 -1.20 16 10 C 0.42 1.20 7.52 -15.98 -0.12 1.08 16 11 O -0.23 -0.54 9.94 -2.15 -0.02 -0.56 16 12 C 0.10 0.15 5.18 -39.21 -0.20 -0.05 16 13 C -0.07 -0.05 9.23 -39.42 -0.36 -0.42 16 14 C -0.09 0.02 5.35 -104.65 -0.56 -0.54 16 15 C -0.08 0.11 2.80 36.01 0.10 0.21 16 16 O -0.53 0.35 12.83 -35.23 -0.45 -0.10 16 17 Si 0.94 -1.29 25.14 -169.99 -4.27 -5.56 16 18 H -0.24 0.18 7.11 56.52 0.40 0.59 16 19 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 20 H -0.25 0.33 7.04 56.52 0.40 0.73 16 21 C -0.11 0.00 8.45 -39.52 -0.33 -0.33 16 22 C -0.02 -0.01 6.32 -39.52 -0.25 -0.26 16 23 Cl -0.05 -0.04 28.95 -51.86 -1.50 -1.55 16 24 C -0.10 -0.10 9.77 -39.39 -0.38 -0.48 16 25 N -0.57 -1.34 9.18 -14.16 -0.13 -1.47 16 26 C 0.36 0.48 12.26 -92.31 -1.13 -0.65 16 27 N -0.50 -1.59 10.47 -13.26 -0.14 -1.73 16 28 C 0.11 0.36 7.69 -16.02 -0.12 0.23 16 29 S 0.22 0.49 23.16 -107.50 -2.49 -2.00 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 32 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 33 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 34 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 35 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 36 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 37 H 0.08 -0.27 7.96 -51.92 -0.41 -0.69 16 38 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 39 H 0.16 0.11 8.06 -52.48 -0.42 -0.31 16 40 H 0.14 0.09 8.06 -52.49 -0.42 -0.33 16 41 H 0.12 -0.26 7.96 -51.93 -0.41 -0.68 16 42 H 0.38 -1.47 8.70 45.56 0.40 -1.08 16 43 H 0.14 -0.15 4.86 -52.49 -0.25 -0.41 16 44 H 0.15 0.01 8.06 -52.49 -0.42 -0.41 16 45 H 0.21 -0.51 8.06 -52.49 -0.42 -0.93 16 LS Contribution 429.34 15.07 6.47 6.47 Total: 0.00 -7.05 429.34 -11.64 -18.69 By element: Atomic # 1 Polarization: -3.55 SS G_CDS: -4.48 Total: -8.04 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.19 Total: 2.16 kcal Atomic # 7 Polarization: -2.93 SS G_CDS: -0.27 Total: -3.20 kcal Atomic # 8 Polarization: -0.19 SS G_CDS: -0.47 Total: -0.66 kcal Atomic # 14 Polarization: -5.18 SS G_CDS: -6.70 Total: -11.87 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.49 Total: -2.00 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.50 Total: -1.55 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -7.05 -11.64 -18.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_13429472_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.732 kcal (2) G-P(sol) polarization free energy of solvation -7.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds