Wall clock time and date at job start Tue Mar 9 2021 13:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86300 * 109.47239 * 2 1 4 4 C 1.86309 * 109.46797 * 240.00247 * 2 1 3 5 5 C 1.89991 * 109.47362 * 120.00460 * 2 1 3 6 6 C 3.07390 * 109.47367 * 120.00553 * 2 1 3 7 7 C 4.50600 * 109.47360 * 120.00363 * 2 1 3 8 8 C 1.33571 * 124.38660 * 267.36093 * 7 6 5 9 9 C 1.44687 * 114.56388 * 179.97438 * 8 7 6 10 10 C 1.41838 * 130.33107 * 180.02562 * 9 8 7 11 11 O 1.35431 * 120.51830 * 359.97438 * 10 9 8 12 12 C 1.35892 * 117.99404 * 175.14573 * 11 10 9 13 13 C 1.38738 * 120.05321 * 76.85877 * 12 11 10 14 14 C 1.38166 * 119.96692 * 179.97438 * 13 12 11 15 15 C 1.50701 * 119.96327 * 179.97438 * 14 13 12 16 16 O 1.42899 * 109.47105 * 64.99984 * 15 14 13 17 17 Si 1.86303 * 109.47332 * 184.99940 * 15 14 13 18 18 H 1.48505 * 109.46858 * 59.99807 * 17 15 14 19 19 H 1.48495 * 109.47513 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47199 * 300.00215 * 17 15 14 21 21 C 1.38223 * 120.07422 * 0.02562 * 14 13 12 22 22 C 1.38417 * 120.10125 * 359.97438 * 21 14 13 23 23 Cl 1.73599 * 119.98528 * 179.97438 * 22 21 14 24 24 C 1.38235 * 120.02886 * 359.72773 * 22 21 14 25 25 N 1.32293 * 118.95558 * 180.02562 * 10 9 8 26 26 C 1.32089 * 121.22289 * 359.93272 * 25 10 9 27 27 N 1.31319 * 122.21243 * 0.03486 * 26 25 10 28 28 C 1.33814 * 121.04292 * 359.97438 * 27 26 25 29 29 S 1.75340 * 124.38687 * 87.34891 * 7 6 5 30 30 H 1.09002 * 109.46905 * 299.99419 * 1 2 3 31 31 H 1.08994 * 109.47537 * 59.99592 * 1 2 3 32 32 H 1.08999 * 109.47435 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47088 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47392 * 300.00275 * 3 2 1 35 35 H 1.09002 * 109.46698 * 60.00454 * 3 2 1 36 36 H 1.08999 * 109.47121 * 300.00184 * 4 2 1 37 37 H 1.09008 * 109.46950 * 59.99826 * 4 2 1 38 38 H 1.08994 * 109.46867 * 179.97438 * 4 2 1 39 39 H 1.08004 * 122.71924 * 359.97438 * 8 7 6 40 40 H 1.07992 * 120.01745 * 0.02562 * 13 12 11 41 41 H 1.09000 * 109.47180 * 304.99937 * 15 14 13 42 42 H 0.96695 * 113.99914 * 60.00372 * 16 15 14 43 43 H 1.07997 * 119.95284 * 179.97438 * 21 14 13 44 44 H 1.07999 * 120.03327 * 180.27812 * 24 22 21 45 45 H 1.08000 * 118.89004 * 180.32046 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5213 5 6 2.4964 -0.8957 1.5512 6 6 2.8878 -1.4493 2.5097 7 6 3.3652 -2.1244 3.6789 8 6 3.1390 -1.7166 4.9306 9 6 3.7207 -2.5599 5.9523 10 6 3.6894 -2.4443 7.3656 11 8 3.0374 -1.4151 7.9572 12 6 2.9539 -1.4082 9.3135 13 6 4.0527 -1.0381 10.0754 14 6 3.9657 -1.0312 11.4543 15 6 5.1594 -0.6297 12.2818 16 8 5.4673 0.7444 12.0385 17 14 4.7716 -0.8687 14.0883 18 1 4.4517 -2.2967 14.3411 19 1 5.9481 -0.4737 14.9037 20 1 3.6060 -0.0270 14.4599 21 6 2.7852 -1.3932 12.0756 22 6 1.6871 -1.7630 11.3184 23 17 0.2063 -2.2177 12.1019 24 6 1.7676 -1.7654 9.9384 25 7 4.3079 -3.3569 8.0968 26 6 4.9477 -4.3664 7.5344 27 7 5.0060 -4.5195 6.2314 28 6 4.4120 -3.6487 5.4071 29 16 4.3221 -3.5934 3.6530 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.5741 1.7564 -0.0005 34 1 2.1207 2.2703 -0.8899 35 1 2.1207 2.2702 0.8901 36 1 2.1205 -1.9058 -1.5213 37 1 2.1205 -0.3643 -2.4113 38 1 3.5739 -0.8778 -1.5215 39 1 2.5681 -0.8293 5.1614 40 1 4.9753 -0.7547 9.5909 41 1 6.0150 -1.2475 12.0090 42 1 4.7493 1.3533 12.2592 43 1 2.7195 -1.3875 13.1536 44 1 0.9095 -2.0496 9.3474 45 1 5.4353 -5.0929 8.1675 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_13429472_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:04 Heat of formation + Delta-G solvation = 41.874271 kcal Electronic energy + Delta-G solvation = -30244.129841 eV Core-core repulsion = 25890.965291 eV Total energy + Delta-G solvation = -4353.164550 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 418.049 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86605 -41.41966 -39.77427 -38.04364 -37.92375 -37.16989 -34.63646 -34.04649 -32.73483 -31.74438 -30.52546 -29.43050 -28.26537 -28.26456 -27.14716 -26.79293 -26.03283 -24.07427 -23.25333 -22.87785 -21.09375 -20.33709 -18.82151 -18.30396 -18.08409 -17.56625 -17.53389 -17.06692 -16.85394 -16.60229 -16.29453 -15.89450 -15.76647 -15.58100 -15.35960 -14.83109 -14.76236 -14.45569 -14.41453 -14.18156 -14.10498 -13.85990 -13.80870 -13.38740 -13.23826 -13.14981 -13.13577 -12.96114 -12.81717 -12.60808 -12.54902 -12.39115 -12.31774 -12.19996 -12.10866 -12.03793 -11.80259 -11.70413 -11.49183 -10.80324 -10.78937 -10.65982 -10.55324 -10.20583 -10.04280 -9.98269 -9.36684 -1.11750 -0.53705 -0.45279 -0.37277 -0.20217 0.31072 0.42709 0.79768 1.08428 1.35034 1.42627 1.47470 1.49831 1.61847 1.72281 1.89230 2.23831 2.32006 2.38602 2.45920 2.55513 2.64914 2.97574 3.08493 3.24150 3.28443 3.52518 3.61264 3.67905 3.74133 3.90611 4.01921 4.17396 4.24771 4.49584 4.52600 4.65029 4.74374 4.74675 4.86291 4.86395 4.87381 4.89359 4.92010 4.92048 4.94384 4.97409 5.16937 5.34209 5.61729 5.71295 5.71355 5.88617 6.34804 6.63583 6.64141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.208 2.792 3 C -0.463 4.463 4 C -0.464 4.464 5 C -0.341 4.341 6 C -0.178 4.178 7 C -0.090 4.090 8 C -0.066 4.066 9 C -0.197 4.197 10 C 0.413 3.587 11 O -0.234 6.234 12 C 0.085 3.915 13 C -0.073 4.073 14 C -0.087 4.087 15 C -0.076 4.076 16 O -0.548 6.548 17 Si 0.969 3.031 18 H -0.251 1.251 19 H -0.268 1.268 20 H -0.244 1.244 21 C -0.108 4.108 22 C -0.022 4.022 23 Cl -0.052 7.052 24 C -0.102 4.102 25 N -0.570 5.570 26 C 0.358 3.642 27 N -0.521 5.521 28 C 0.094 3.906 29 S 0.228 5.772 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.170 0.830 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.392 0.608 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 2.338 -1.840 3.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.389 2.611 3 C -0.571 4.571 4 C -0.571 4.571 5 C -0.376 4.376 6 C -0.180 4.180 7 C -0.206 4.206 8 C -0.096 4.096 9 C -0.211 4.211 10 C 0.219 3.781 11 O -0.135 6.135 12 C 0.043 3.957 13 C -0.092 4.092 14 C -0.088 4.088 15 C -0.186 4.186 16 O -0.355 6.355 17 Si 0.792 3.208 18 H -0.175 1.175 19 H -0.193 1.193 20 H -0.168 1.168 21 C -0.126 4.126 22 C -0.049 4.049 23 Cl -0.023 7.023 24 C -0.121 4.121 25 N -0.302 5.302 26 C 0.067 3.933 27 N -0.241 5.241 28 C -0.157 4.157 29 S 0.493 5.507 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.187 0.813 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.241 0.759 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -0.075 0.484 -1.690 1.760 hybrid contribution -1.299 1.235 0.921 2.015 sum -1.374 1.719 -0.769 2.331 Atomic orbital electron populations 1.26236 1.20339 1.05023 1.05497 0.76309 0.64918 0.63273 0.56625 1.26237 1.06684 1.18683 1.05496 1.26237 1.06724 1.08606 1.15565 1.37726 0.97681 0.98644 1.03525 1.19965 1.01957 1.00805 0.95283 1.19689 1.06497 1.00938 0.93463 1.20984 0.99716 1.00361 0.88550 1.19613 1.08773 1.00661 0.92088 1.20163 0.85753 0.85209 0.86950 1.84640 1.69003 1.39963 1.19916 1.18413 0.94566 1.02711 0.80021 1.21257 0.97876 0.96500 0.93539 1.20202 0.95524 0.99457 0.93638 1.25060 0.98103 0.86247 1.09221 1.86524 1.44585 1.14863 1.89567 0.85395 0.80219 0.81454 0.73730 1.17505 1.19255 1.16779 1.21249 0.91381 0.98915 1.01059 1.20532 0.89206 1.03152 0.91983 1.98415 1.32913 1.90810 1.80198 1.21094 0.98643 0.99175 0.93206 1.68135 1.15299 1.06433 1.40286 1.25540 0.88719 0.91410 0.87620 1.68152 1.22125 1.28267 1.05554 1.24158 0.96711 0.93362 1.01425 1.84426 1.51663 1.21262 0.93356 0.91095 0.89172 0.91144 0.91142 0.89176 0.91091 0.91082 0.89136 0.91085 0.81259 0.84310 0.84983 0.75896 0.83314 0.83339 0.73759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.86 8.65 113.37 0.98 3.84 16 2 Si 1.21 -8.82 14.26 68.60 0.98 -7.84 16 3 C -0.46 2.85 8.65 113.37 0.98 3.83 16 4 C -0.46 2.88 8.65 113.37 0.98 3.86 16 5 C -0.34 -0.73 12.14 74.32 0.90 0.17 16 6 C -0.18 -1.22 13.65 30.02 0.41 -0.81 16 7 C -0.09 -0.65 6.15 22.46 0.14 -0.51 16 8 C -0.07 -0.41 10.19 22.86 0.23 -0.18 16 9 C -0.20 -1.48 6.08 -20.31 -0.12 -1.60 16 10 C 0.41 2.81 7.52 85.51 0.64 3.45 16 11 O -0.23 -1.36 9.94 -30.61 -0.30 -1.66 16 12 C 0.08 0.32 5.18 22.51 0.12 0.43 16 13 C -0.07 -0.13 9.23 22.37 0.21 0.08 16 14 C -0.09 0.07 5.35 -19.88 -0.11 -0.04 16 15 C -0.08 0.24 2.80 71.24 0.20 0.44 16 16 O -0.55 0.97 12.83 -148.98 -1.91 -0.95 16 17 Si 0.97 -3.10 25.14 68.60 1.72 -1.38 16 18 H -0.25 0.52 7.11 99.48 0.71 1.23 16 19 H -0.27 -0.07 7.11 99.48 0.71 0.63 16 20 H -0.24 0.90 7.04 99.48 0.70 1.60 16 21 C -0.11 0.05 8.45 22.31 0.19 0.23 16 22 C -0.02 -0.03 6.32 22.31 0.14 0.11 16 23 Cl -0.05 -0.09 28.95 -2.72 -0.08 -0.17 16 24 C -0.10 -0.25 9.77 22.39 0.22 -0.03 16 25 N -0.57 -2.98 9.18 -311.70 -2.86 -5.84 16 26 C 0.36 1.03 12.26 180.94 2.22 3.25 16 27 N -0.52 -3.68 10.47 -195.88 -2.05 -5.73 16 28 C 0.09 0.75 7.69 84.82 0.65 1.40 16 29 S 0.23 1.35 23.16 -56.49 -1.31 0.05 16 30 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 31 H 0.09 -0.73 7.96 -2.39 -0.02 -0.75 16 32 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 33 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 34 H 0.09 -0.72 7.96 -2.39 -0.02 -0.74 16 35 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 36 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 37 H 0.09 -0.73 7.96 -2.38 -0.02 -0.75 16 38 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 39 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 40 H 0.14 0.26 8.06 -2.91 -0.02 0.23 16 41 H 0.13 -0.63 7.96 -2.39 -0.02 -0.65 16 42 H 0.39 -3.25 8.70 -74.06 -0.64 -3.90 16 43 H 0.15 -0.45 4.86 -2.91 -0.01 -0.47 16 44 H 0.15 0.15 8.06 -2.91 -0.02 0.12 16 45 H 0.25 -1.37 8.06 -2.91 -0.02 -1.40 16 Total: 0.00 -16.57 429.34 4.34 -12.23 By element: Atomic # 1 Polarization: -7.83 SS G_CDS: 1.17 Total: -6.65 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 8.98 Total: 17.94 kcal Atomic # 7 Polarization: -6.66 SS G_CDS: -4.91 Total: -11.57 kcal Atomic # 8 Polarization: -0.39 SS G_CDS: -2.22 Total: -2.61 kcal Atomic # 14 Polarization: -11.93 SS G_CDS: 2.70 Total: -9.22 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.31 Total: 0.05 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Total: -16.57 4.34 -12.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_13429472_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.107 kcal (2) G-P(sol) polarization free energy of solvation -16.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds