Wall clock time and date at job start Tue Mar 9 2021 13:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76201 * 103.00126 * 2 1 4 4 C 1.38767 * 120.09453 * 0.02562 * 3 2 1 5 5 C 1.38231 * 119.97013 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.91041 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47176 * 299.99715 * 6 5 4 8 8 Si 1.86297 * 109.47068 * 179.97438 * 6 5 4 9 9 H 1.48504 * 109.47430 * 60.00013 * 8 6 5 10 10 H 1.48502 * 109.47134 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47348 * 299.99874 * 8 6 5 12 12 C 1.38242 * 120.18056 * 359.97438 * 5 4 3 13 13 C 1.38326 * 120.18869 * 359.74676 * 12 5 4 14 14 C 1.38477 * 120.02296 * 0.50973 * 13 12 5 15 15 O 1.35990 * 120.08503 * 179.76739 * 14 13 12 16 16 C 1.35411 * 118.00026 * 265.80537 * 15 14 13 17 17 C 1.41847 * 120.52187 * 185.15749 * 16 15 14 18 18 C 1.44682 * 130.33320 * 359.97438 * 17 16 15 19 19 C 1.33573 * 114.56667 * 180.02562 * 18 17 16 20 20 C 1.43204 * 124.38954 * 179.97438 * 19 18 17 21 21 C 7.93103 * 152.95739 * 164.10733 * 2 1 3 22 22 Si 9.54345 * 148.15845 * 154.78729 * 2 1 3 23 23 C 1.86305 * 109.46840 * 254.20177 * 22 21 20 24 24 C 1.86301 * 109.47369 * 14.19702 * 22 21 20 25 25 C 1.86292 * 109.47051 * 134.20146 * 22 21 20 26 26 S 1.75346 * 111.22263 * 0.24290 * 19 18 17 27 27 C 1.40019 * 117.52956 * 179.97438 * 17 16 15 28 28 N 1.33813 * 119.04016 * 359.97438 * 27 17 16 29 29 C 1.31323 * 121.04097 * 359.97438 * 28 27 17 30 30 N 1.32087 * 122.21060 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47196 * 300.00554 * 1 2 3 33 33 H 1.09004 * 109.46615 * 60.00442 * 1 2 3 34 34 H 1.08000 * 120.01485 * 359.95355 * 4 3 2 35 35 H 1.09000 * 109.47025 * 59.99854 * 6 5 4 36 36 H 0.96703 * 114.00084 * 180.02562 * 7 6 5 37 37 H 1.07993 * 119.90437 * 180.02562 * 12 5 4 38 38 H 1.07997 * 119.98796 * 180.25718 * 13 12 5 39 39 H 1.08001 * 122.71334 * 0.02562 * 18 17 16 40 40 H 1.08992 * 109.47470 * 59.99976 * 23 22 21 41 41 H 1.09001 * 109.46861 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.46984 * 299.99464 * 23 22 21 43 43 H 1.09000 * 109.46643 * 60.00511 * 24 22 21 44 44 H 1.09001 * 109.47264 * 179.97438 * 24 22 21 45 45 H 1.08992 * 109.47193 * 300.00179 * 24 22 21 46 46 H 1.09001 * 109.47638 * 60.00006 * 25 22 21 47 47 H 1.09001 * 109.47135 * 179.97438 * 25 22 21 48 48 H 1.09000 * 109.47451 * 299.99790 * 25 22 21 49 49 H 1.07998 * 118.89502 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1972 2.6649 0.0005 5 6 1.5111 4.0111 0.0011 6 6 0.4095 5.0396 0.0022 7 8 -0.3990 4.8730 -1.1642 8 14 1.1543 6.7472 0.0035 9 1 1.9936 6.9222 -1.2091 10 1 0.0689 7.7607 0.0040 11 1 1.9942 6.9201 1.2159 12 6 2.8327 4.4166 0.0016 13 6 3.8483 3.4775 0.0069 14 6 3.5432 2.1268 0.0010 15 8 4.5407 1.2025 0.0014 16 6 4.9520 0.7105 -1.1912 17 6 5.9108 -0.3333 -1.2479 18 6 6.5948 -1.0353 -0.1837 19 6 7.4473 -1.9766 -0.5976 20 6 8.2334 -2.7961 0.2749 21 6 8.8780 -3.4680 0.9874 22 14 9.9213 -4.5552 2.1447 23 6 9.8945 -3.8366 3.8634 24 6 9.2155 -6.2789 2.1814 25 6 11.6769 -4.6160 1.5244 26 16 7.4847 -2.0738 -2.3479 27 6 6.2908 -0.7950 -2.5140 28 7 5.7404 -0.2397 -3.6000 29 6 4.8553 0.7245 -3.4929 30 7 4.4636 1.1937 -2.3219 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 0.1637 2.3512 0.0002 35 1 -0.2062 4.9115 0.8925 36 1 -1.1295 5.5033 -1.2298 37 1 3.0729 5.4694 0.0024 38 1 4.8797 3.7979 0.0115 39 1 6.4294 -0.8160 0.8608 40 1 8.8674 -3.8009 4.2264 41 1 10.4934 -4.4600 4.5273 42 1 10.3075 -2.8281 3.8420 43 1 9.2312 -6.6994 1.1759 44 1 9.8143 -6.9027 2.8450 45 1 8.1884 -6.2433 2.5444 46 1 12.0899 -3.6075 1.5030 47 1 12.2755 -5.2393 2.1886 48 1 11.6926 -5.0364 0.5189 49 1 4.4329 1.1474 -4.3923 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_13446740_17567452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:20 Heat of formation + Delta-G solvation = 45.027094 kcal Electronic energy + Delta-G solvation = -32428.206742 eV Core-core repulsion = 28084.829569 eV Total energy + Delta-G solvation = -4343.377173 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 430.075 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.54292 -41.09798 -39.49426 -37.66953 -37.49187 -34.36430 -33.82972 -32.67239 -32.23480 -30.39752 -29.94029 -29.62096 -28.47062 -28.46813 -27.21060 -26.04343 -25.35581 -24.42022 -22.99260 -22.64871 -20.94005 -20.29754 -18.68890 -18.35460 -18.10821 -17.77518 -17.44173 -17.08250 -16.80163 -16.38240 -16.27071 -15.81673 -15.55154 -15.38847 -15.28937 -15.17999 -14.79510 -14.64372 -14.42458 -14.30709 -14.22517 -14.10488 -14.03873 -13.95120 -13.77413 -13.66990 -13.56575 -13.36400 -13.35009 -13.14396 -12.60374 -12.59065 -12.53083 -12.29911 -12.14446 -12.10468 -12.02817 -11.87740 -11.59512 -11.35484 -11.23760 -10.91340 -10.85031 -10.75736 -10.52412 -10.44313 -9.89868 -9.78624 -9.09415 -8.48892 -0.84539 -0.27977 -0.14123 -0.12710 0.08283 0.39114 0.57478 0.67768 1.00642 1.31228 1.34025 1.40756 1.45377 1.54104 1.64985 1.66982 1.81482 2.29917 2.38802 2.47680 2.56050 2.67956 2.90957 3.20075 3.20514 3.35773 3.54486 3.59395 3.74496 3.88480 3.95789 4.02100 4.05049 4.10342 4.20505 4.31211 4.44469 4.59610 4.66323 4.66499 4.66605 4.70804 4.70946 4.71120 4.72513 4.74670 4.83862 4.90595 4.98201 5.04709 5.22567 5.40508 5.46766 5.50110 5.50395 5.64782 6.16721 6.43619 6.54251 6.93687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.094 6.094 3 C -0.079 4.079 4 C -0.094 4.094 5 C -0.044 4.044 6 C -0.085 4.085 7 O -0.543 6.543 8 Si 0.944 3.056 9 H -0.244 1.244 10 H -0.254 1.254 11 H -0.247 1.247 12 C -0.117 4.117 13 C -0.080 4.080 14 C 0.102 3.898 15 O -0.228 6.228 16 C 0.422 3.578 17 C -0.187 4.187 18 C -0.058 4.058 19 C -0.086 4.086 20 C -0.125 4.125 21 C -0.358 4.358 22 Si 1.145 2.855 23 C -0.452 4.452 24 C -0.453 4.453 25 C -0.453 4.453 26 S 0.216 5.784 27 C 0.109 3.891 28 N -0.507 5.507 29 C 0.357 3.643 30 N -0.561 5.561 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.383 0.617 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 0.677 3.483 3.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.150 5.850 3 C -0.193 4.193 4 C -0.118 4.118 5 C -0.046 4.046 6 C -0.195 4.195 7 O -0.349 6.349 8 Si 0.766 3.234 9 H -0.167 1.167 10 H -0.178 1.178 11 H -0.171 1.171 12 C -0.138 4.138 13 C -0.100 4.100 14 C 0.054 3.946 15 O -0.129 6.129 16 C 0.228 3.772 17 C -0.201 4.201 18 C -0.089 4.089 19 C -0.201 4.201 20 C -0.126 4.126 21 C -0.396 4.396 22 Si 1.330 2.670 23 C -0.560 4.560 24 C -0.561 4.561 25 C -0.561 4.561 26 S 0.480 5.520 27 C -0.142 4.142 28 N -0.227 5.227 29 C 0.066 3.934 30 N -0.292 5.292 31 H 0.130 0.870 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.099 0.901 36 H 0.230 0.770 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.177 0.823 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.410 -0.606 1.696 1.847 hybrid contribution -2.321 2.059 1.397 3.403 sum -1.912 1.453 3.094 3.916 Atomic orbital electron populations 1.23772 0.94253 1.07617 1.06099 1.85801 1.06787 1.01158 1.91273 1.22023 0.95074 0.98220 1.03935 1.20862 0.98321 0.91609 1.00965 1.19247 0.93104 0.93570 0.98680 1.24775 0.95492 1.07966 0.91247 1.86508 1.45730 1.60682 1.41983 0.85759 0.80916 0.74594 0.82133 1.16709 1.17785 1.17070 1.20850 0.91628 0.99541 1.01777 1.21031 1.00501 0.90423 0.98058 1.17837 0.84288 0.87435 1.05086 1.84676 1.49672 1.53817 1.24751 1.20096 0.86092 0.85825 0.85166 1.19499 1.04223 1.01595 0.94819 1.20867 0.94357 0.93769 0.99900 1.19515 1.02851 1.01489 0.96279 1.19476 0.97914 0.97705 0.97530 1.36188 1.01057 1.01145 1.01195 0.77079 0.63682 0.63373 0.62838 1.26111 1.05084 1.07380 1.17473 1.26116 1.07312 1.17569 1.05077 1.26116 1.18050 1.05092 1.06817 1.84505 1.37435 1.32141 0.97916 1.23911 0.99721 0.99858 0.90679 1.68092 1.12258 1.12259 1.30060 1.24789 0.87438 0.86999 0.94188 1.68077 1.30400 1.32176 0.98557 0.86954 0.89350 0.89269 0.84489 0.90143 0.76985 0.85066 0.84198 0.82302 0.90804 0.90287 0.90822 0.90818 0.90281 0.90806 0.90814 0.90267 0.90810 0.77263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.12 9.15 101.05 0.92 1.05 16 2 S -0.09 -0.26 21.86 -107.50 -2.35 -2.61 16 3 C -0.08 -0.25 6.12 -38.94 -0.24 -0.48 16 4 C -0.09 -0.17 8.92 -39.39 -0.35 -0.52 16 5 C -0.04 -0.06 5.42 -104.62 -0.57 -0.62 16 6 C -0.08 0.09 2.81 36.01 0.10 0.19 16 7 O -0.54 0.32 12.74 -35.23 -0.45 -0.13 16 8 Si 0.94 -1.17 25.06 -169.99 -4.26 -5.43 16 9 H -0.24 -0.07 7.11 56.52 0.40 0.33 16 10 H -0.25 0.29 7.11 56.52 0.40 0.69 16 11 H -0.25 0.20 7.11 56.52 0.40 0.61 16 12 C -0.12 -0.14 8.66 -39.55 -0.34 -0.48 16 13 C -0.08 -0.16 9.98 -39.46 -0.39 -0.56 16 14 C 0.10 0.37 5.00 -39.05 -0.20 0.17 16 15 O -0.23 -0.99 9.35 -2.40 -0.02 -1.01 16 16 C 0.42 1.94 7.37 -15.97 -0.12 1.83 16 17 C -0.19 -0.84 6.08 -105.31 -0.64 -1.48 16 18 C -0.06 -0.21 10.19 -38.67 -0.39 -0.60 16 19 C -0.09 -0.32 6.15 -39.29 -0.24 -0.56 16 20 C -0.12 -0.45 13.64 -38.85 -0.53 -0.98 16 21 C -0.36 -0.53 12.14 29.53 0.36 -0.18 16 22 Si 1.14 -3.28 14.26 -169.99 -2.42 -5.70 16 23 C -0.45 1.05 8.65 101.05 0.87 1.93 16 24 C -0.45 1.03 8.65 101.05 0.87 1.91 16 25 C -0.45 1.05 8.65 101.05 0.87 1.93 16 26 S 0.22 0.69 23.16 -107.50 -2.49 -1.80 16 27 C 0.11 0.50 7.69 -16.02 -0.12 0.38 16 28 N -0.51 -2.26 10.47 -13.26 -0.14 -2.39 16 29 C 0.36 1.06 12.26 -92.31 -1.13 -0.07 16 30 N -0.56 -2.38 9.42 -14.16 -0.13 -2.51 16 31 H 0.11 -0.22 8.14 -51.93 -0.42 -0.64 16 32 H 0.09 -0.16 7.75 -51.93 -0.40 -0.56 16 33 H 0.09 -0.10 7.75 -51.92 -0.40 -0.50 16 34 H 0.14 0.05 5.88 -52.49 -0.31 -0.26 16 35 H 0.08 -0.24 7.96 -51.93 -0.41 -0.66 16 36 H 0.38 -1.91 8.74 45.56 0.40 -1.51 16 37 H 0.13 -0.08 4.86 -52.49 -0.26 -0.33 16 38 H 0.14 0.05 8.06 -52.49 -0.42 -0.37 16 39 H 0.16 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 41 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 42 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 43 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 44 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 45 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 46 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 47 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 48 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 49 H 0.21 -0.15 8.06 -52.49 -0.42 -0.57 16 LS Contribution 452.11 15.07 6.81 6.81 Total: 0.00 -8.79 452.11 -12.31 -21.10 By element: Atomic # 1 Polarization: -3.57 SS G_CDS: -5.59 Total: -9.16 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.26 Total: 2.82 kcal Atomic # 7 Polarization: -4.63 SS G_CDS: -0.27 Total: -4.90 kcal Atomic # 8 Polarization: -0.66 SS G_CDS: -0.47 Total: -1.13 kcal Atomic # 14 Polarization: -4.44 SS G_CDS: -6.68 Total: -11.13 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -4.84 Total: -4.41 kcal Total LS contribution 6.81 Total: 6.81 kcal Total: -8.79 -12.31 -21.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_13446740_17567452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.126 kcal (2) G-P(sol) polarization free energy of solvation -8.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds