Wall clock time and date at job start Tue Mar 9 2021 13:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76201 * 103.00126 * 2 1 4 4 C 1.38767 * 120.09453 * 0.02562 * 3 2 1 5 5 C 1.38231 * 119.97013 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.91041 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47176 * 299.99715 * 6 5 4 8 8 Si 1.86297 * 109.47068 * 179.97438 * 6 5 4 9 9 H 1.48504 * 109.47430 * 60.00013 * 8 6 5 10 10 H 1.48502 * 109.47134 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47348 * 299.99874 * 8 6 5 12 12 C 1.38242 * 120.18056 * 359.97438 * 5 4 3 13 13 C 1.38326 * 120.18869 * 359.74676 * 12 5 4 14 14 C 1.38477 * 120.02296 * 0.50973 * 13 12 5 15 15 O 1.35990 * 120.08503 * 179.76739 * 14 13 12 16 16 C 1.35411 * 118.00026 * 265.80537 * 15 14 13 17 17 C 1.41847 * 120.52187 * 185.15749 * 16 15 14 18 18 C 1.44682 * 130.33320 * 359.97438 * 17 16 15 19 19 C 1.33573 * 114.56667 * 180.02562 * 18 17 16 20 20 C 1.43204 * 124.38954 * 179.97438 * 19 18 17 21 21 C 7.93103 * 152.95739 * 164.10733 * 2 1 3 22 22 Si 9.54345 * 148.15845 * 154.78729 * 2 1 3 23 23 C 1.86305 * 109.46840 * 254.20177 * 22 21 20 24 24 C 1.86301 * 109.47369 * 14.19702 * 22 21 20 25 25 C 1.86292 * 109.47051 * 134.20146 * 22 21 20 26 26 S 1.75346 * 111.22263 * 0.24290 * 19 18 17 27 27 C 1.40019 * 117.52956 * 179.97438 * 17 16 15 28 28 N 1.33813 * 119.04016 * 359.97438 * 27 17 16 29 29 C 1.31323 * 121.04097 * 359.97438 * 28 27 17 30 30 N 1.32087 * 122.21060 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47196 * 300.00554 * 1 2 3 33 33 H 1.09004 * 109.46615 * 60.00442 * 1 2 3 34 34 H 1.08000 * 120.01485 * 359.95355 * 4 3 2 35 35 H 1.09000 * 109.47025 * 59.99854 * 6 5 4 36 36 H 0.96703 * 114.00084 * 180.02562 * 7 6 5 37 37 H 1.07993 * 119.90437 * 180.02562 * 12 5 4 38 38 H 1.07997 * 119.98796 * 180.25718 * 13 12 5 39 39 H 1.08001 * 122.71334 * 0.02562 * 18 17 16 40 40 H 1.08992 * 109.47470 * 59.99976 * 23 22 21 41 41 H 1.09001 * 109.46861 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.46984 * 299.99464 * 23 22 21 43 43 H 1.09000 * 109.46643 * 60.00511 * 24 22 21 44 44 H 1.09001 * 109.47264 * 179.97438 * 24 22 21 45 45 H 1.08992 * 109.47193 * 300.00179 * 24 22 21 46 46 H 1.09001 * 109.47638 * 60.00006 * 25 22 21 47 47 H 1.09001 * 109.47135 * 179.97438 * 25 22 21 48 48 H 1.09000 * 109.47451 * 299.99790 * 25 22 21 49 49 H 1.07998 * 118.89502 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1972 2.6649 0.0005 5 6 1.5111 4.0111 0.0011 6 6 0.4095 5.0396 0.0022 7 8 -0.3990 4.8730 -1.1642 8 14 1.1543 6.7472 0.0035 9 1 1.9936 6.9222 -1.2091 10 1 0.0689 7.7607 0.0040 11 1 1.9942 6.9201 1.2159 12 6 2.8327 4.4166 0.0016 13 6 3.8483 3.4775 0.0069 14 6 3.5432 2.1268 0.0010 15 8 4.5407 1.2025 0.0014 16 6 4.9520 0.7105 -1.1912 17 6 5.9108 -0.3333 -1.2479 18 6 6.5948 -1.0353 -0.1837 19 6 7.4473 -1.9766 -0.5976 20 6 8.2334 -2.7961 0.2749 21 6 8.8780 -3.4680 0.9874 22 14 9.9213 -4.5552 2.1447 23 6 9.8945 -3.8366 3.8634 24 6 9.2155 -6.2789 2.1814 25 6 11.6769 -4.6160 1.5244 26 16 7.4847 -2.0738 -2.3479 27 6 6.2908 -0.7950 -2.5140 28 7 5.7404 -0.2397 -3.6000 29 6 4.8553 0.7245 -3.4929 30 7 4.4636 1.1937 -2.3219 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 0.1637 2.3512 0.0002 35 1 -0.2062 4.9115 0.8925 36 1 -1.1295 5.5033 -1.2298 37 1 3.0729 5.4694 0.0024 38 1 4.8797 3.7979 0.0115 39 1 6.4294 -0.8160 0.8608 40 1 8.8674 -3.8009 4.2264 41 1 10.4934 -4.4600 4.5273 42 1 10.3075 -2.8281 3.8420 43 1 9.2312 -6.6994 1.1759 44 1 9.8143 -6.9027 2.8450 45 1 8.1884 -6.2433 2.5444 46 1 12.0899 -3.6075 1.5030 47 1 12.2755 -5.2393 2.1886 48 1 11.6926 -5.0364 0.5189 49 1 4.4329 1.1474 -4.3923 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_13446740_17567452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:19 Heat of formation + Delta-G solvation = 52.280697 kcal Electronic energy + Delta-G solvation = -32427.892203 eV Core-core repulsion = 28084.829569 eV Total energy + Delta-G solvation = -4343.062633 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 430.075 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.78512 -41.27410 -39.61653 -37.90996 -37.43703 -34.60814 -34.04155 -32.76419 -32.33287 -30.61100 -29.89910 -29.43194 -28.26603 -28.26494 -27.33558 -26.24645 -25.53616 -24.52443 -23.19227 -22.79591 -21.15342 -20.52130 -18.61450 -18.48472 -18.27361 -17.90399 -17.64086 -17.23217 -17.04269 -16.56541 -16.36174 -15.84382 -15.71903 -15.47178 -15.35838 -15.25201 -14.76997 -14.72212 -14.49357 -14.39524 -14.16184 -14.10820 -13.95772 -13.85947 -13.80106 -13.73719 -13.54229 -13.14890 -13.13586 -12.96069 -12.78411 -12.68365 -12.57574 -12.39068 -12.31891 -12.10942 -12.02408 -11.86530 -11.70939 -11.45627 -11.38192 -11.00969 -10.78475 -10.74065 -10.66020 -10.44373 -10.02955 -9.97147 -9.34874 -8.65714 -1.09654 -0.47635 -0.41356 -0.34937 -0.03050 0.28689 0.32855 0.44463 1.10252 1.27986 1.39705 1.45123 1.48994 1.52947 1.62038 1.72826 1.90724 2.32795 2.34837 2.39482 2.46060 2.56070 2.69677 3.00025 3.11860 3.28101 3.30655 3.52844 3.69190 3.78125 3.90028 4.02729 4.13030 4.14017 4.15980 4.19427 4.44250 4.50025 4.54780 4.65687 4.72442 4.74999 4.82938 4.86326 4.86459 4.89354 4.92081 4.92211 4.93011 4.94578 5.13556 5.33735 5.42007 5.61617 5.71209 5.71341 5.94763 6.35229 6.67752 6.78278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.146 6.146 3 C -0.084 4.084 4 C -0.098 4.098 5 C -0.049 4.049 6 C -0.082 4.082 7 O -0.560 6.560 8 Si 0.972 3.028 9 H -0.269 1.269 10 H -0.251 1.251 11 H -0.253 1.253 12 C -0.122 4.122 13 C -0.086 4.086 14 C 0.078 3.922 15 O -0.234 6.234 16 C 0.417 3.583 17 C -0.198 4.198 18 C -0.065 4.065 19 C -0.091 4.091 20 C -0.177 4.177 21 C -0.342 4.342 22 Si 1.205 2.795 23 C -0.462 4.462 24 C -0.463 4.463 25 C -0.462 4.462 26 S 0.228 5.772 27 C 0.094 3.906 28 N -0.521 5.521 29 C 0.355 3.645 30 N -0.570 5.570 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.106 0.894 36 H 0.401 0.599 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.166 0.834 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 0.835 4.216 4.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.098 5.902 3 C -0.198 4.198 4 C -0.122 4.122 5 C -0.051 4.051 6 C -0.192 4.192 7 O -0.370 6.370 8 Si 0.796 3.204 9 H -0.194 1.194 10 H -0.175 1.175 11 H -0.177 1.177 12 C -0.142 4.142 13 C -0.106 4.106 14 C 0.030 3.970 15 O -0.135 6.135 16 C 0.223 3.777 17 C -0.213 4.213 18 C -0.096 4.096 19 C -0.206 4.206 20 C -0.179 4.179 21 C -0.376 4.376 22 Si 1.386 2.614 23 C -0.570 4.570 24 C -0.571 4.571 25 C -0.570 4.570 26 S 0.493 5.507 27 C -0.156 4.156 28 N -0.241 5.241 29 C 0.065 3.935 30 N -0.301 5.301 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.169 0.831 35 H 0.123 0.877 36 H 0.252 0.748 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.183 0.817 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.299 -0.414 2.419 2.472 hybrid contribution -2.127 2.014 1.195 3.164 sum -2.426 1.600 3.614 4.638 Atomic orbital electron populations 1.23832 0.90838 1.08698 1.06973 1.85937 1.10650 1.02093 1.91514 1.22093 0.95243 0.98175 1.04267 1.21077 0.98689 0.91677 1.00715 1.19603 0.93878 0.94018 0.97598 1.24794 0.95348 1.06916 0.92182 1.86460 1.46620 1.61754 1.42139 0.85362 0.80178 0.74420 0.80455 1.19396 1.17481 1.17687 1.21086 0.91654 1.00118 1.01336 1.21220 1.01388 0.90105 0.97871 1.18111 0.84478 0.87842 1.06527 1.84664 1.49982 1.54112 1.24751 1.20233 0.86091 0.85883 0.85486 1.19623 1.04611 1.01948 0.95107 1.20942 0.94547 0.93951 1.00126 1.19672 1.02812 1.01489 0.96641 1.19909 0.99575 0.99328 0.99081 1.37700 0.99783 0.99960 1.00199 0.76366 0.62159 0.61734 0.61123 1.26222 1.05129 1.07547 1.18121 1.26230 1.07413 1.18195 1.05223 1.26223 1.18580 1.05184 1.07035 1.84318 1.36975 1.31656 0.97794 1.24142 1.00196 1.00360 0.90928 1.68144 1.12964 1.12956 1.30067 1.25465 0.86785 0.86396 0.94875 1.68135 1.30644 1.32489 0.98788 0.85734 0.88003 0.88758 0.83105 0.87664 0.74795 0.83636 0.83280 0.81671 0.91126 0.89100 0.91119 0.91101 0.89075 0.91166 0.91118 0.89071 0.91065 0.74153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.26 9.15 113.37 1.04 1.30 16 2 S -0.15 -0.98 21.86 -56.49 -1.24 -2.22 16 3 C -0.08 -0.61 6.12 22.68 0.14 -0.48 16 4 C -0.10 -0.35 8.92 22.39 0.20 -0.15 16 5 C -0.05 -0.11 5.42 -19.86 -0.11 -0.22 16 6 C -0.08 0.27 2.81 71.24 0.20 0.47 16 7 O -0.56 1.38 12.74 -148.98 -1.90 -0.52 16 8 Si 0.97 -3.12 25.06 68.60 1.72 -1.40 16 9 H -0.27 -0.24 7.11 99.48 0.71 0.47 16 10 H -0.25 0.92 7.11 99.48 0.71 1.62 16 11 H -0.25 0.59 7.11 99.48 0.71 1.30 16 12 C -0.12 -0.32 8.66 22.29 0.19 -0.13 16 13 C -0.09 -0.45 9.98 22.35 0.22 -0.22 16 14 C 0.08 0.68 5.00 22.62 0.11 0.80 16 15 O -0.23 -2.54 9.35 -31.51 -0.29 -2.84 16 16 C 0.42 4.72 7.37 85.51 0.63 5.35 16 17 C -0.20 -2.24 6.08 -20.31 -0.12 -2.36 16 18 C -0.07 -0.63 10.19 22.86 0.23 -0.39 16 19 C -0.09 -0.88 6.15 22.46 0.14 -0.74 16 20 C -0.18 -1.56 13.64 30.03 0.41 -1.15 16 21 C -0.34 -1.27 12.14 74.34 0.90 -0.37 16 22 Si 1.21 -7.49 14.26 68.60 0.98 -6.52 16 23 C -0.46 2.44 8.65 113.37 0.98 3.42 16 24 C -0.46 2.41 8.65 113.37 0.98 3.40 16 25 C -0.46 2.48 8.65 113.37 0.98 3.46 16 26 S 0.23 1.89 23.16 -56.49 -1.31 0.58 16 27 C 0.09 1.05 7.69 84.82 0.65 1.70 16 28 N -0.52 -5.38 10.47 -195.88 -2.05 -7.43 16 29 C 0.36 2.49 12.26 180.94 2.22 4.71 16 30 N -0.57 -5.69 9.42 -311.71 -2.94 -8.63 16 31 H 0.12 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.10 -0.46 7.75 -2.39 -0.02 -0.48 16 33 H 0.09 -0.26 7.75 -2.39 -0.02 -0.28 16 34 H 0.15 -0.01 5.88 -2.91 -0.02 -0.03 16 35 H 0.11 -0.85 7.96 -2.39 -0.02 -0.87 16 36 H 0.40 -4.63 8.74 -74.06 -0.65 -5.27 16 37 H 0.15 -0.15 4.86 -2.91 -0.01 -0.17 16 38 H 0.15 0.31 8.06 -2.91 -0.02 0.29 16 39 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 40 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 41 H 0.09 -0.67 7.96 -2.39 -0.02 -0.69 16 42 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 43 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 44 H 0.09 -0.67 7.96 -2.39 -0.02 -0.69 16 45 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 46 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 47 H 0.09 -0.68 7.96 -2.39 -0.02 -0.70 16 48 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 49 H 0.24 -0.31 8.06 -2.91 -0.02 -0.33 16 Total: 0.00 -21.88 452.11 4.10 -17.78 By element: Atomic # 1 Polarization: -8.32 SS G_CDS: 1.13 Total: -7.19 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 10.00 Total: 18.38 kcal Atomic # 7 Polarization: -11.07 SS G_CDS: -4.99 Total: -16.06 kcal Atomic # 8 Polarization: -1.17 SS G_CDS: -2.19 Total: -3.36 kcal Atomic # 14 Polarization: -10.61 SS G_CDS: 2.70 Total: -7.91 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.54 Total: -1.64 kcal Total: -21.88 4.10 -17.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_13446740_17567452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.061 kcal (2) G-P(sol) polarization free energy of solvation -21.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds