Wall clock time and date at job start Tue Mar 9 2021 13:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35978 * 116.99696 * 2 1 4 4 C 1.39178 * 120.07383 * 180.02562 * 3 2 1 5 5 O 1.35970 * 120.07637 * 359.97438 * 4 3 2 6 6 C 1.35419 * 117.99798 * 85.44683 * 5 4 3 7 7 C 1.41843 * 120.52267 * 174.93356 * 6 5 4 8 8 C 1.44688 * 130.33153 * 0.04924 * 7 6 5 9 9 C 1.33576 * 114.56691 * 179.97438 * 8 7 6 10 10 C 1.43192 * 124.38997 * 180.02562 * 9 8 7 11 11 C 8.34505 * 143.82673 * 169.39032 * 2 1 3 12 12 Si 9.48310 * 107.54542 * 346.96899 * 4 1 2 13 13 C 1.86300 * 109.47017 * 130.41545 * 12 11 10 14 14 C 1.86296 * 109.47323 * 250.41496 * 12 11 10 15 15 C 1.86301 * 109.47055 * 10.41824 * 12 11 10 16 16 S 1.75341 * 111.21980 * 359.77214 * 9 8 7 17 17 C 1.40017 * 117.53416 * 180.02562 * 7 6 5 18 18 N 1.33816 * 119.03608 * 359.97438 * 17 7 6 19 19 C 1.31323 * 121.03892 * 0.02562 * 18 17 7 20 20 N 1.32086 * 122.21479 * 0.02562 * 19 18 17 21 21 C 1.38599 * 119.84700 * 179.72911 * 4 3 2 22 22 C 1.38222 * 119.99798 * 0.27298 * 21 4 3 23 23 C 1.50705 * 119.92560 * 180.02562 * 22 21 4 24 24 O 1.42900 * 109.46894 * 104.99764 * 23 22 21 25 25 Si 1.86305 * 109.46880 * 345.00431 * 23 22 21 26 26 H 1.48500 * 109.47216 * 59.99594 * 25 23 22 27 27 H 1.48497 * 109.46936 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.46858 * 299.99667 * 25 23 22 29 29 C 1.38263 * 120.15300 * 0.02562 * 22 21 4 30 30 C 1.50700 * 119.92712 * 179.97438 * 29 22 21 31 31 C 1.38238 * 120.15126 * 359.97438 * 29 22 21 32 32 H 1.08998 * 109.47198 * 299.99814 * 1 2 3 33 33 H 1.09000 * 109.47038 * 59.99902 * 1 2 3 34 34 H 1.09003 * 109.46887 * 180.02562 * 1 2 3 35 35 H 1.08004 * 122.71315 * 359.95212 * 8 7 6 36 36 H 1.08994 * 109.47345 * 60.00092 * 13 12 11 37 37 H 1.08997 * 109.47179 * 180.02562 * 13 12 11 38 38 H 1.09000 * 109.47260 * 300.00107 * 13 12 11 39 39 H 1.09004 * 109.47054 * 59.99979 * 14 12 11 40 40 H 1.08997 * 109.47377 * 180.02562 * 14 12 11 41 41 H 1.09004 * 109.47204 * 300.00418 * 14 12 11 42 42 H 1.08996 * 109.47644 * 59.99677 * 15 12 11 43 43 H 1.09007 * 109.46827 * 179.97438 * 15 12 11 44 44 H 1.08999 * 109.47136 * 299.99362 * 15 12 11 45 45 H 1.08005 * 118.88827 * 180.02562 * 19 18 17 46 46 H 1.08003 * 120.00226 * 180.25710 * 21 4 3 47 47 H 1.08990 * 109.47237 * 225.00176 * 23 22 21 48 48 H 0.96691 * 114.00767 * 300.00299 * 24 23 22 49 49 H 1.08997 * 109.47496 * 89.99933 * 30 29 22 50 50 H 1.09000 * 109.47446 * 210.00149 * 30 29 22 51 51 H 1.09000 * 109.46795 * 330.00183 * 30 29 22 52 52 H 1.08002 * 119.99847 * 180.02562 * 31 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4361 1.2863 -0.0005 5 8 4.1797 0.1480 -0.0005 6 6 4.4474 -0.4365 -1.1924 7 6 5.3058 -1.5633 -1.2656 8 6 6.0121 -2.2719 -0.2203 9 6 6.7437 -3.3051 -0.6463 10 6 7.5247 -4.1494 0.2067 11 6 8.1655 -4.8413 0.9069 12 14 9.2018 -5.9605 2.0413 13 6 10.9181 -6.1380 1.3387 14 6 9.3015 -5.2016 3.7397 15 6 8.4016 -7.6389 2.1570 16 16 6.6181 -3.4978 -2.3846 17 6 5.5399 -2.1177 -2.5298 18 7 4.9517 -1.5684 -3.5989 19 6 4.1646 -0.5243 -3.4769 20 7 3.9133 0.0352 -2.3071 21 6 4.0604 2.5237 -0.0062 22 6 3.3029 3.6799 -0.0056 23 6 3.9834 5.0246 -0.0124 24 8 3.8811 5.6036 -1.3148 25 14 5.7798 4.8136 0.4341 26 1 6.4348 3.9223 -0.5567 27 1 6.4502 6.1387 0.4280 28 1 5.8860 4.2119 1.7876 29 6 1.9223 3.6057 0.0012 30 6 1.1014 4.8695 0.0023 31 6 1.2931 2.3748 0.0068 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 5.9529 -1.9880 0.8201 36 1 11.3864 -5.1561 1.2710 37 1 11.5123 -6.7801 1.9889 38 1 10.8599 -6.5821 0.3450 39 1 8.2973 -5.0977 4.1508 40 1 9.8961 -5.8431 4.3900 41 1 9.7697 -4.2196 3.6720 42 1 8.3433 -8.0830 1.1633 43 1 8.9962 -8.2808 2.8071 44 1 7.3975 -7.5351 2.5680 45 1 3.7074 -0.1092 -4.3630 46 1 5.1387 2.5846 -0.0108 47 1 3.5026 5.6787 0.7148 48 1 4.2886 5.0741 -2.0138 49 1 0.8985 5.1720 -1.0250 50 1 0.1596 4.6906 0.5211 51 1 1.6523 5.6601 0.5118 52 1 0.2145 2.3197 0.0117 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_14060144_17567452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:48 Heat of formation + Delta-G solvation = 8.318241 kcal Electronic energy + Delta-G solvation = -35481.555911 eV Core-core repulsion = 30856.978625 eV Total energy + Delta-G solvation = -4624.577286 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 428.118 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.83987 -41.72695 -39.93974 -39.45856 -37.92225 -37.13252 -34.62623 -34.14111 -33.18689 -32.12610 -30.68538 -29.44468 -28.90735 -28.27805 -28.27604 -28.12553 -26.64610 -26.08347 -25.52144 -23.54359 -23.11784 -22.46828 -21.06455 -20.46043 -18.70576 -18.63314 -18.31669 -17.85920 -17.48384 -17.13629 -16.97759 -16.71010 -16.62882 -16.21936 -16.03387 -15.76857 -15.59052 -15.41406 -15.29111 -14.80204 -14.49153 -14.40267 -14.30873 -14.14800 -14.11983 -13.87011 -13.82149 -13.68277 -13.26163 -13.18015 -13.15571 -13.14523 -12.97273 -12.83228 -12.78662 -12.49580 -12.39948 -12.33977 -12.26660 -12.16880 -12.12311 -11.91452 -11.72067 -11.70407 -11.42549 -10.79605 -10.75043 -10.67184 -10.44550 -10.04897 -9.99865 -9.37377 -9.32340 -1.11103 -0.46108 -0.41531 -0.24359 0.05497 0.30589 0.42229 1.09942 1.32887 1.40362 1.43809 1.51421 1.60489 1.71140 1.82681 2.08053 2.31828 2.36284 2.42702 2.44639 2.54082 2.69646 2.99465 3.10878 3.28043 3.43353 3.52573 3.64291 3.65760 3.81677 3.93145 4.07598 4.20220 4.24830 4.27361 4.32522 4.47689 4.56640 4.60062 4.63496 4.68317 4.79218 4.80129 4.85089 4.85235 4.86014 4.88118 4.90898 4.91044 4.93400 4.95403 5.14581 5.36865 5.41697 5.50193 5.60469 5.70003 5.70239 5.80994 6.24149 6.33260 6.64616 6.67081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.143 3.857 4 C 0.019 3.981 5 O -0.231 6.231 6 C 0.413 3.587 7 C -0.203 4.203 8 C -0.067 4.067 9 C -0.091 4.091 10 C -0.179 4.179 11 C -0.341 4.341 12 Si 1.208 2.792 13 C -0.463 4.463 14 C -0.463 4.463 15 C -0.463 4.463 16 S 0.229 5.771 17 C 0.094 3.906 18 N -0.523 5.523 19 C 0.355 3.645 20 N -0.570 5.570 21 C -0.084 4.084 22 C -0.149 4.149 23 C -0.059 4.059 24 O -0.542 6.542 25 Si 0.957 3.043 26 H -0.266 1.266 27 H -0.262 1.262 28 H -0.259 1.259 29 C 0.000 4.000 30 C -0.118 4.118 31 C -0.199 4.199 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.166 0.834 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.245 0.755 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.387 0.613 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.083 0.917 52 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 0.037 2.969 3.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.096 3.904 4 C -0.024 4.024 5 O -0.132 6.132 6 C 0.219 3.781 7 C -0.218 4.218 8 C -0.098 4.098 9 C -0.206 4.206 10 C -0.181 4.181 11 C -0.375 4.375 12 Si 1.389 2.611 13 C -0.570 4.570 14 C -0.571 4.571 15 C -0.571 4.571 16 S 0.494 5.506 17 C -0.156 4.156 18 N -0.243 5.243 19 C 0.065 3.935 20 N -0.302 5.302 21 C -0.103 4.103 22 C -0.149 4.149 23 C -0.171 4.171 24 O -0.349 6.349 25 Si 0.783 3.217 26 H -0.191 1.191 27 H -0.186 1.186 28 H -0.183 1.183 29 C 0.000 4.000 30 C -0.174 4.174 31 C -0.217 4.217 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.183 0.817 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.261 0.739 46 H 0.152 0.848 47 H 0.156 0.844 48 H 0.236 0.764 49 H 0.104 0.896 50 H 0.101 0.899 51 H 0.102 0.898 52 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.671 -0.448 1.840 2.010 hybrid contribution -0.917 0.489 0.799 1.311 sum -1.588 0.041 2.640 3.081 Atomic orbital electron populations 1.23411 0.75754 1.05581 1.02913 1.86132 1.24039 1.26485 1.87805 1.19326 0.90714 0.85938 0.94387 1.17881 0.86890 0.84413 1.13192 1.84710 1.65981 1.37949 1.24529 1.20407 0.85567 0.86349 0.85780 1.19654 1.06089 1.00641 0.95378 1.20960 0.95090 0.93491 1.00233 1.19667 1.03995 0.99997 0.96937 1.19984 0.99619 0.99201 0.99314 1.37831 0.99762 1.00019 0.99919 0.76341 0.62158 0.61379 0.61261 1.26226 1.18007 1.05292 1.07520 1.26229 1.05140 1.07838 1.17853 1.26232 1.08053 1.17527 1.05257 1.84303 1.43369 1.23919 0.99058 1.24147 1.00072 1.00375 0.91030 1.68148 1.12498 1.13377 1.30317 1.25518 0.87887 0.85573 0.94559 1.68120 1.27951 1.34879 0.99210 1.21072 1.00445 0.90546 0.98201 1.19995 0.94016 0.94665 1.06253 1.24732 1.09592 0.92841 0.89901 1.86487 1.82414 1.49773 1.16202 0.85597 0.75971 0.79727 0.80412 1.19053 1.18599 1.18301 1.19945 0.92823 0.95682 0.91558 1.20972 0.99380 0.93172 1.03915 1.21340 1.01428 0.90287 1.08694 0.90718 0.91103 0.87040 0.81691 0.91141 0.89068 0.91067 0.91141 0.89088 0.91145 0.91090 0.89071 0.91171 0.73918 0.84850 0.84416 0.76421 0.89611 0.89894 0.89800 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.08 16 2 O -0.33 -2.34 10.28 -79.45 -0.82 -3.16 16 3 C 0.14 0.93 6.70 22.58 0.15 1.08 16 4 C 0.02 0.17 5.01 22.58 0.11 0.28 16 5 O -0.23 -2.74 9.72 -17.51 -0.17 -2.91 16 6 C 0.41 4.86 7.58 85.51 0.65 5.51 16 7 C -0.20 -2.35 6.08 -20.31 -0.12 -2.47 16 8 C -0.07 -0.66 10.19 22.86 0.23 -0.43 16 9 C -0.09 -0.88 6.15 22.46 0.14 -0.74 16 10 C -0.18 -1.58 13.65 30.01 0.41 -1.17 16 11 C -0.34 -1.24 12.15 74.31 0.90 -0.34 16 12 Si 1.21 -7.70 14.26 68.60 0.98 -6.72 16 13 C -0.46 2.53 8.65 113.37 0.98 3.51 16 14 C -0.46 2.47 8.65 113.37 0.98 3.45 16 15 C -0.46 2.49 8.65 113.37 0.98 3.47 16 16 S 0.23 1.87 23.16 -56.49 -1.31 0.56 16 17 C 0.09 1.04 7.69 84.82 0.65 1.69 16 18 N -0.52 -5.18 10.47 -195.88 -2.05 -7.23 16 19 C 0.36 2.20 12.26 180.94 2.22 4.42 16 20 N -0.57 -5.43 9.42 -311.70 -2.94 -8.37 16 21 C -0.08 -0.46 8.59 22.35 0.19 -0.26 16 22 C -0.15 -0.22 5.26 -19.86 -0.10 -0.32 16 23 C -0.06 0.09 2.04 71.24 0.15 0.24 16 24 O -0.54 0.60 12.80 -148.98 -1.91 -1.31 16 25 Si 0.96 0.61 25.49 68.60 1.75 2.36 16 26 H -0.27 -0.67 6.73 99.48 0.67 0.00 16 27 H -0.26 -0.71 7.11 99.48 0.71 -0.01 16 28 H -0.26 -0.68 7.11 99.48 0.71 0.02 16 29 C 0.00 0.00 5.88 -19.86 -0.12 -0.12 16 30 C -0.12 0.54 9.53 71.24 0.68 1.22 16 31 C -0.20 -0.21 8.69 22.35 0.19 -0.02 16 32 H 0.07 -0.40 7.65 -2.39 -0.02 -0.41 16 33 H 0.07 -0.32 7.68 -2.39 -0.02 -0.34 16 34 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 37 H 0.09 -0.69 7.96 -2.39 -0.02 -0.71 16 38 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 39 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 40 H 0.09 -0.68 7.96 -2.39 -0.02 -0.69 16 41 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 42 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 43 H 0.09 -0.68 7.96 -2.38 -0.02 -0.70 16 44 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 45 H 0.25 -0.65 8.06 -2.91 -0.02 -0.68 16 46 H 0.13 0.62 4.88 -2.91 -0.01 0.61 16 47 H 0.14 -0.69 6.48 -2.39 -0.02 -0.71 16 48 H 0.39 -2.23 8.70 -74.06 -0.64 -2.88 16 49 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 50 H 0.08 -0.59 8.08 -2.39 -0.02 -0.61 16 51 H 0.08 -0.46 6.22 -2.39 -0.01 -0.48 16 52 H 0.16 -0.68 6.30 -2.91 -0.02 -0.70 16 Total: 0.00 -21.67 459.83 4.99 -16.68 By element: Atomic # 1 Polarization: -11.02 SS G_CDS: 1.06 Total: -9.96 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 10.39 Total: 20.06 kcal Atomic # 7 Polarization: -10.61 SS G_CDS: -4.99 Total: -15.60 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -2.89 Total: -7.38 kcal Atomic # 14 Polarization: -7.09 SS G_CDS: 2.73 Total: -4.36 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.31 Total: 0.56 kcal Total: -21.67 4.99 -16.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_14060144_17567452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.997 kcal (2) G-P(sol) polarization free energy of solvation -21.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds