Wall clock time and date at job start Tue Mar 9 2021 14:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 C 1.53007 * 109.47334 * 240.00032 * 2 1 3 5 5 O 1.45195 * 109.47224 * 119.99961 * 2 1 3 6 6 C 1.34641 * 117.00154 * 59.99779 * 5 2 1 7 7 O 1.21512 * 119.99761 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00359 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00348 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47202 * 179.97438 * 9 8 6 11 11 F 1.39894 * 112.85092 * 48.80871 * 10 9 8 12 12 C 1.53786 * 113.61516 * 180.02562 * 10 9 8 13 13 C 1.53776 * 87.08034 * 139.98302 * 12 10 9 14 14 H 1.09006 * 113.60625 * 219.93407 * 13 12 10 15 15 N 1.46499 * 113.61848 * 89.11945 * 13 12 10 16 16 C 1.38608 * 120.00285 * 156.52202 * 15 13 12 17 17 N 1.29684 * 124.95073 * 0.02562 * 16 15 13 18 18 C 1.32115 * 116.86689 * 179.97438 * 17 16 15 19 19 C 1.33323 * 114.58156 * 359.97438 * 18 17 16 20 20 C 1.50700 * 125.95232 * 180.26731 * 19 18 17 21 21 O 1.42905 * 109.47287 * 299.71369 * 20 19 18 22 22 Si 1.86297 * 109.47076 * 179.71596 * 20 19 18 23 23 S 1.70962 * 124.94713 * 179.97438 * 16 15 13 24 24 C 1.53776 * 87.17703 * 334.52308 * 13 12 10 25 25 H 1.08996 * 109.47198 * 300.00069 * 1 2 3 26 26 H 1.09003 * 109.46734 * 60.00488 * 1 2 3 27 27 H 1.08994 * 109.46838 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47057 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46889 * 299.99417 * 3 2 1 30 30 H 1.08996 * 109.47112 * 59.99878 * 3 2 1 31 31 H 1.09001 * 109.46676 * 300.00289 * 4 2 1 32 32 H 1.09000 * 109.46911 * 59.99987 * 4 2 1 33 33 H 1.08993 * 109.47308 * 180.02562 * 4 2 1 34 34 H 0.97004 * 119.99739 * 0.02562 * 8 6 5 35 35 H 1.09011 * 109.46549 * 60.00384 * 9 8 6 36 36 H 1.08994 * 109.47294 * 300.00271 * 9 8 6 37 37 H 1.09005 * 113.61295 * 25.42866 * 12 10 9 38 38 H 1.08997 * 113.69016 * 254.54707 * 12 10 9 39 39 H 0.97003 * 119.99402 * 336.53009 * 15 13 12 40 40 H 1.08005 * 122.70872 * 180.02562 * 18 17 16 41 41 H 1.08994 * 109.47160 * 59.71554 * 20 19 18 42 42 H 0.96696 * 114.00152 * 300.00306 * 21 20 19 43 43 H 1.48504 * 110.00002 * 179.97438 * 22 20 19 44 44 H 1.48499 * 110.00307 * 301.31699 * 22 20 19 45 45 H 1.08995 * 113.61604 * 140.02484 * 24 13 12 46 46 H 1.08999 * 113.61881 * 270.93313 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6654 2.4171 9 6 1.6731 -4.0665 2.5837 10 6 2.2733 -4.6145 3.8800 11 9 2.0546 -3.7749 4.9774 12 6 1.9180 -6.0863 4.1495 13 6 3.3647 -6.2640 4.6394 14 1 3.8177 -7.2060 4.3301 15 7 3.5382 -5.9915 6.0683 16 6 4.6041 -6.5503 6.7560 17 7 5.5022 -7.3251 6.2319 18 6 6.4512 -7.7689 7.0369 19 6 6.3497 -7.3491 8.2982 20 6 7.2917 -7.6922 9.4234 21 8 7.3036 -9.1077 9.6197 22 14 6.7234 -6.8533 10.9866 23 16 4.9269 -6.3173 8.4187 24 6 3.7360 -5.0761 3.7361 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7217 -1.2491 34 1 2.6262 -2.2363 3.0837 35 1 2.0396 -4.6499 1.7389 36 1 0.5862 -4.1354 2.6286 37 1 1.6899 -6.6528 3.2465 38 1 1.1721 -6.2204 4.9329 39 1 2.9071 -5.4200 6.5331 40 1 7.2454 -8.4187 6.7001 41 1 8.2963 -7.3517 9.1728 42 1 6.4406 -9.4806 9.8462 43 1 7.6437 -7.1843 12.1041 44 1 6.6762 -5.3827 10.7856 45 1 4.4570 -4.3939 4.1864 46 1 4.0041 -5.3669 2.7204 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15734492_15704118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:30:46 Heat of formation + Delta-G solvation = -76.667359 kcal Electronic energy + Delta-G solvation = -29819.611487 eV Core-core repulsion = 25367.645910 eV Total energy + Delta-G solvation = -4451.965577 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.135 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.94104 -41.85392 -40.90180 -39.78198 -38.48093 -37.81445 -36.16149 -35.19338 -34.51421 -31.26796 -29.23903 -28.39358 -28.33339 -27.10183 -26.58659 -25.05482 -23.95337 -22.94777 -21.64250 -21.12209 -20.32285 -19.65950 -19.35445 -18.14269 -17.86613 -17.45400 -17.25907 -17.02763 -16.62339 -16.49150 -16.37141 -16.15658 -15.78975 -15.73333 -15.49462 -15.42148 -15.12493 -14.91347 -14.63913 -14.45570 -14.09885 -13.85108 -13.65537 -13.39658 -13.14690 -13.07326 -12.94793 -12.90315 -12.86110 -12.80898 -12.51325 -12.46525 -12.38656 -12.02741 -11.77325 -11.43817 -11.35668 -11.20954 -11.11568 -10.83411 -10.35250 -10.29810 -10.18457 -8.78628 -5.11780 -0.08454 -0.00953 0.65255 1.06231 1.26158 1.56986 1.67673 1.87593 1.95108 2.08504 2.90059 2.99905 3.14707 3.23970 3.46175 3.55640 3.60211 3.70878 3.74924 3.76559 3.91267 3.92484 4.31481 4.35863 4.47732 4.49453 4.56009 4.58864 4.61944 4.64308 4.70844 4.72211 4.73768 4.81277 4.83094 4.84617 4.88527 4.90809 5.02205 5.15484 5.21174 5.24432 5.30440 5.51087 5.83023 6.08138 6.24214 6.72640 6.96162 7.23151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.703 5.703 9 C 0.131 3.869 10 C 0.082 3.918 11 F -0.194 7.194 12 C -0.141 4.141 13 C 0.134 3.866 14 H 0.110 0.890 15 N -0.671 5.671 16 C 0.317 3.683 17 N -0.571 5.571 18 C 0.104 3.896 19 C -0.307 4.307 20 C -0.012 4.012 21 O -0.550 6.550 22 Si 0.728 3.272 23 S 0.112 5.888 24 C -0.162 4.162 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.099 0.901 39 H 0.422 0.578 40 H 0.180 0.820 41 H 0.119 0.881 42 H 0.395 0.605 43 H -0.271 1.271 44 H -0.270 1.270 45 H 0.074 0.926 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 0.139 0.562 2.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.399 3.601 7 O -0.480 6.480 8 N -0.363 5.363 9 C 0.008 3.992 10 C 0.063 3.937 11 F -0.175 7.175 12 C -0.179 4.179 13 C 0.026 3.974 14 H 0.128 0.872 15 N -0.311 5.311 16 C -0.053 4.053 17 N -0.297 5.297 18 C -0.046 4.046 19 C -0.430 4.430 20 C -0.126 4.126 21 O -0.357 6.357 22 Si 0.631 3.369 23 S 0.361 5.639 24 C -0.202 4.202 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.250 0.750 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.162 0.838 38 H 0.117 0.883 39 H 0.262 0.738 40 H 0.197 0.803 41 H 0.136 0.864 42 H 0.245 0.755 43 H -0.197 1.197 44 H -0.196 1.196 45 H 0.093 0.907 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.694 1.006 0.709 2.962 hybrid contribution 1.021 0.066 -0.294 1.064 sum -1.673 1.073 0.415 2.031 Atomic orbital electron populations 1.22475 0.93942 1.03780 1.03529 1.22382 0.94541 0.92557 0.81491 1.21900 1.02436 0.90967 1.04251 1.22473 1.01631 1.02332 0.97234 1.86317 1.71552 1.23287 1.47422 1.18246 0.78690 0.80824 0.82306 1.90914 1.42040 1.70945 1.44137 1.44549 1.55550 1.12762 1.23411 1.21899 1.01115 0.79367 0.96803 1.22336 0.98543 0.90193 0.82622 1.92848 1.95700 1.73265 1.55642 1.23992 0.96667 0.92174 1.05109 1.21884 0.97089 0.99359 0.79092 0.87204 1.43833 1.25777 1.52621 1.08835 1.23880 0.92726 0.94797 0.93897 1.66475 1.06840 1.18609 1.37806 1.21455 0.96625 0.98419 0.88127 1.25705 1.04412 1.11912 1.00997 1.24192 0.99357 0.87265 1.01751 1.86479 1.37736 1.19037 1.92493 0.94120 0.88633 0.78318 0.75803 1.83925 1.23814 1.49811 1.06342 1.24264 0.94433 0.98408 1.03071 0.92068 0.89346 0.91635 0.91240 0.88183 0.91308 0.91563 0.89391 0.91961 0.74991 0.87854 0.90080 0.83827 0.88284 0.73829 0.80326 0.86371 0.75469 1.19683 1.19590 0.90742 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 2 C 0.13 0.36 1.13 -10.79 -0.01 0.35 16 3 C -0.14 0.26 8.85 71.98 0.64 0.90 16 4 C -0.18 -0.48 8.37 71.98 0.60 0.13 16 5 O -0.37 -2.12 9.94 -55.50 -0.55 -2.67 16 6 C 0.65 4.00 8.06 129.79 1.05 5.04 16 7 O -0.59 -6.25 11.88 19.80 0.24 -6.01 16 8 N -0.70 -0.19 5.47 -590.85 -3.23 -3.43 16 9 C 0.13 -0.50 5.37 86.38 0.46 -0.03 16 10 C 0.08 -0.50 1.66 -10.17 -0.02 -0.52 16 11 F -0.19 0.41 15.75 44.97 0.71 1.12 16 12 C -0.14 1.29 7.28 31.12 0.23 1.51 16 13 C 0.13 -0.67 4.42 45.51 0.20 -0.47 16 14 H 0.11 -0.32 7.70 -2.38 -0.02 -0.33 16 15 N -0.67 1.70 5.33 -327.91 -1.75 -0.05 16 16 C 0.32 0.53 8.09 179.32 1.45 1.98 16 17 N -0.57 -2.79 9.85 -202.03 -1.99 -4.79 16 18 C 0.10 0.36 11.22 83.54 0.94 1.29 16 19 C -0.31 -0.32 5.74 24.57 0.14 -0.18 16 20 C -0.01 0.00 2.99 71.24 0.21 0.22 16 21 O -0.55 0.09 12.87 -148.98 -1.92 -1.83 16 22 Si 0.73 -0.99 31.05 68.60 2.13 1.15 16 23 S 0.11 -0.05 20.57 -56.49 -1.16 -1.21 16 24 C -0.16 0.94 7.35 31.21 0.23 1.17 16 25 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 27 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 28 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 29 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.07 0.49 5.88 -2.39 -0.01 0.48 16 32 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.41 -0.72 8.29 -92.71 -0.77 -1.49 16 35 H 0.10 -0.56 7.95 -2.38 -0.02 -0.57 16 36 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.14 -1.89 8.10 -2.38 -0.02 -1.91 16 38 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.42 -1.99 7.94 -92.71 -0.74 -2.72 16 40 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 41 H 0.12 0.00 7.96 -2.39 -0.02 -0.02 16 42 H 0.40 -3.04 8.70 -74.06 -0.64 -3.68 16 43 H -0.27 -1.24 7.11 99.48 0.71 -0.53 16 44 H -0.27 -0.93 7.11 99.48 0.71 -0.22 16 45 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.13 -1.06 7.97 -2.39 -0.02 -1.07 16 Total: 0.00 -17.84 391.67 -1.88 -19.72 By element: Atomic # 1 Polarization: -12.38 SS G_CDS: -1.08 Total: -13.46 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 6.72 Total: 11.46 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: -6.97 Total: -8.26 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -2.23 Total: -10.51 kcal Atomic # 9 Polarization: 0.41 SS G_CDS: 0.71 Total: 1.12 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: 2.13 Total: 1.15 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.16 Total: -1.21 kcal Total: -17.84 -1.88 -19.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15734492_15704118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.948 kcal (2) G-P(sol) polarization free energy of solvation -17.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds