Wall clock time and date at job start Tue Mar 9 2021 14:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33329 * 125.94840 * 2 1 4 4 C 1.50706 * 122.70991 * 0.02562 * 3 2 1 5 5 O 1.42896 * 109.47014 * 330.00087 * 4 3 2 6 6 Si 1.86292 * 109.46958 * 209.99961 * 4 3 2 7 7 N 1.32116 * 114.57709 * 179.82833 * 3 2 1 8 8 C 1.29690 * 116.86631 * 0.47656 * 7 3 2 9 9 N 1.38615 * 124.94685 * 179.73596 * 8 7 3 10 10 C 1.46499 * 119.99520 * 179.97438 * 9 8 7 11 11 H 1.08998 * 112.84916 * 336.19730 * 10 9 8 12 12 C 1.53775 * 113.61172 * 107.50767 * 10 9 8 13 13 C 1.53780 * 87.08426 * 89.11439 * 12 10 9 14 14 F 1.39905 * 113.61397 * 270.88174 * 13 12 10 15 15 C 1.53001 * 113.69435 * 139.99120 * 13 12 10 16 16 N 1.46501 * 109.47171 * 87.46761 * 15 13 12 17 17 C 1.34769 * 119.99862 * 180.02562 * 16 15 13 18 18 O 1.21513 * 120.00540 * 359.97438 * 17 16 15 19 19 O 1.34640 * 120.00036 * 179.97438 * 17 16 15 20 20 C 1.45207 * 117.00309 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.46779 * 59.99988 * 20 19 17 22 22 C 1.52999 * 109.47206 * 180.02562 * 20 19 17 23 23 C 1.52996 * 109.46867 * 300.00164 * 20 19 17 24 24 C 1.53784 * 87.08149 * 25.43108 * 13 12 10 25 25 S 1.70964 * 110.10081 * 359.74024 * 8 7 3 26 26 H 1.09001 * 109.46953 * 179.71216 * 1 2 3 27 27 H 1.09000 * 109.47318 * 299.70813 * 1 2 3 28 28 H 1.09000 * 109.47161 * 59.71444 * 1 2 3 29 29 H 1.09004 * 109.46471 * 90.00177 * 4 3 2 30 30 H 0.96697 * 114.00201 * 299.99587 * 5 4 3 31 31 H 1.48504 * 110.00358 * 58.68279 * 6 4 3 32 32 H 1.48500 * 110.00111 * 180.02562 * 6 4 3 33 33 H 0.97002 * 119.99984 * 359.97438 * 9 8 7 34 34 H 1.09005 * 113.61567 * 203.66069 * 12 10 9 35 35 H 1.09001 * 113.62059 * 334.56413 * 12 10 9 36 36 H 1.08998 * 109.47089 * 207.46427 * 15 13 12 37 37 H 1.08994 * 109.47129 * 327.46288 * 15 13 12 38 38 H 0.97001 * 119.99878 * 359.97438 * 16 15 13 39 39 H 1.08997 * 109.47171 * 60.00607 * 21 20 19 40 40 H 1.08997 * 109.46971 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47067 * 299.99872 * 21 20 19 42 42 H 1.08998 * 109.47085 * 60.00129 * 22 20 19 43 43 H 1.08997 * 109.46927 * 180.02562 * 22 20 19 44 44 H 1.08999 * 109.46759 * 300.00074 * 22 20 19 45 45 H 1.08996 * 109.47524 * 59.99794 * 23 20 19 46 46 H 1.09004 * 109.47255 * 179.97438 * 23 20 19 47 47 H 1.08998 * 109.47318 * 299.99806 * 23 20 19 48 48 H 1.08998 * 113.61306 * 220.02392 * 24 13 12 49 49 H 1.08996 * 113.68889 * 89.12742 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7413 2.4831 0.0006 5 8 0.4810 2.5023 -0.6726 6 14 2.9318 3.6152 -0.8778 7 7 3.5850 0.8189 0.0036 8 6 3.9315 -0.4309 -0.0030 9 7 5.2385 -0.8924 -0.0059 10 6 5.5066 -2.3327 -0.0128 11 1 4.6808 -2.9189 0.3902 12 6 6.0354 -2.8542 -1.3593 13 6 7.4473 -2.5400 -0.8373 14 9 7.8722 -1.2373 -1.1200 15 6 8.4890 -3.5979 -1.2067 16 7 9.0579 -3.2855 -2.5201 17 6 10.0018 -4.0861 -3.0533 18 8 10.3814 -5.0669 -2.4446 19 8 10.5243 -3.7992 -4.2606 20 6 11.5370 -4.7051 -4.7728 21 6 10.9452 -6.1098 -4.9042 22 6 12.0088 -4.2194 -6.1448 23 6 12.7245 -4.7401 -3.8087 24 6 6.8752 -2.7073 0.5803 25 16 2.5413 -1.4260 -0.0077 26 1 -0.3633 -1.0277 -0.0052 27 1 -0.3634 0.5093 0.8926 28 1 -0.3633 0.5183 -0.8874 29 1 1.6095 2.8211 1.0284 30 1 0.5229 2.2127 -1.5942 31 1 3.1447 3.1466 -2.2707 32 1 2.4028 5.0028 -0.8835 33 1 5.9756 -0.2618 -0.0033 34 1 5.8549 -3.9176 -1.5170 35 1 5.7387 -2.2427 -2.2115 36 1 9.2823 -3.6033 -0.4592 37 1 8.0147 -4.5787 -1.2401 38 1 8.7547 -2.5028 -3.0062 39 1 10.0993 -6.0849 -5.5911 40 1 11.7055 -6.7899 -5.2882 41 1 10.6095 -6.4556 -3.9265 42 1 12.4305 -3.2187 -6.0507 43 1 12.7687 -4.8997 -6.5294 44 1 11.1630 -4.1941 -6.8318 45 1 12.3888 -5.0858 -2.8310 46 1 13.4846 -5.4204 -4.1929 47 1 13.1461 -3.7393 -3.7150 48 1 7.2564 -1.9771 1.2940 49 1 6.9238 -3.7300 0.9542 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15734492_15704122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:30:49 Heat of formation + Delta-G solvation = -78.097150 kcal Electronic energy + Delta-G solvation = -32091.434207 eV Core-core repulsion = 27483.869010 eV Total energy + Delta-G solvation = -4607.565196 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.151 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.93166 -41.84103 -41.13167 -40.04974 -38.50540 -37.86525 -36.16737 -35.23277 -34.59074 -32.49717 -29.68045 -28.74191 -28.38630 -28.32799 -27.09300 -25.68143 -24.63886 -24.04792 -22.95305 -21.47400 -20.92656 -20.57903 -19.39456 -18.92882 -18.00316 -17.91142 -17.58425 -17.43484 -17.02592 -16.74404 -16.61181 -16.42016 -16.18285 -15.77174 -15.73095 -15.47992 -15.37769 -15.10327 -14.69641 -14.44985 -14.28342 -14.12911 -13.94959 -13.80507 -13.59484 -13.42296 -13.39029 -13.17703 -13.10445 -12.94242 -12.89718 -12.84115 -12.71708 -12.51463 -12.43762 -12.37533 -11.98309 -11.72064 -11.43697 -11.40345 -11.17854 -10.97480 -10.67296 -10.56839 -10.33402 -10.05429 -8.66055 -4.80364 -0.05135 0.13328 0.70825 1.07782 1.27409 1.64499 1.68821 1.79898 1.84724 1.97553 2.90979 2.97279 3.15047 3.22699 3.26482 3.45878 3.50260 3.62962 3.71522 3.77079 3.91904 4.12740 4.23195 4.30657 4.32031 4.45240 4.52367 4.56421 4.57833 4.59510 4.62623 4.72224 4.74411 4.80068 4.80758 4.83083 4.85209 4.86880 4.88808 4.93047 5.03834 5.09444 5.17867 5.25079 5.28753 5.31210 5.52083 5.66376 6.24635 6.25249 6.40319 6.90442 7.24212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.256 4.256 3 C 0.054 3.946 4 C -0.038 4.038 5 O -0.532 6.532 6 Si 0.777 3.223 7 N -0.559 5.559 8 C 0.310 3.690 9 N -0.673 5.673 10 C 0.121 3.879 11 H 0.118 0.882 12 C -0.165 4.165 13 C 0.079 3.921 14 F -0.196 7.196 15 C 0.130 3.870 16 N -0.704 5.704 17 C 0.646 3.354 18 O -0.589 6.589 19 O -0.372 6.372 20 C 0.127 3.873 21 C -0.179 4.179 22 C -0.139 4.139 23 C -0.180 4.180 24 C -0.139 4.139 25 S 0.131 5.869 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.385 0.615 31 H -0.306 1.306 32 H -0.291 1.291 33 H 0.415 0.585 34 H 0.139 0.861 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.414 0.586 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.059 0.941 48 H 0.096 0.904 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -4.481 0.321 4.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.379 4.379 3 C -0.076 4.076 4 C -0.151 4.151 5 O -0.339 6.339 6 Si 0.683 3.317 7 N -0.286 5.286 8 C -0.061 4.061 9 N -0.314 5.314 10 C 0.015 3.985 11 H 0.136 0.864 12 C -0.204 4.204 13 C 0.060 3.940 14 F -0.176 7.176 15 C 0.008 3.992 16 N -0.364 5.364 17 C 0.399 3.601 18 O -0.480 6.480 19 O -0.287 6.287 20 C 0.091 3.909 21 C -0.236 4.236 22 C -0.196 4.196 23 C -0.238 4.238 24 C -0.178 4.178 25 S 0.380 5.620 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.234 0.766 31 H -0.233 1.233 32 H -0.219 1.219 33 H 0.255 0.745 34 H 0.157 0.843 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.250 0.750 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.118 0.882 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.114 0.886 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.965 -5.076 0.474 5.189 hybrid contribution -0.622 1.195 -0.973 1.662 sum 0.343 -3.881 -0.499 3.928 Atomic orbital electron populations 1.20163 0.85624 1.02239 1.03695 1.25412 1.02157 0.93367 1.16947 1.20186 0.86961 0.97614 1.02868 1.24435 0.91612 0.95038 1.04041 1.86598 1.28521 1.89096 1.29668 0.92888 0.85482 0.74017 0.79354 1.65711 1.17378 1.17424 1.28127 1.23491 0.92570 0.91589 0.98428 1.43795 1.01356 1.06960 1.79265 1.22091 0.99624 0.79451 0.97360 0.86408 1.24338 0.92427 1.05207 0.98443 1.22304 0.93994 0.77971 0.99686 1.92862 1.91273 1.38879 1.94582 1.21932 0.96073 0.98727 0.82499 1.44561 1.40683 1.29755 1.21363 1.18244 0.79527 0.81986 0.80308 1.90913 1.64098 1.29539 1.63427 1.86320 1.54689 1.54883 1.32773 1.22373 0.85276 0.88502 0.94782 1.22469 1.02282 0.95446 1.03438 1.21901 1.02409 1.02962 0.92329 1.22478 0.97609 1.03038 1.00625 1.24006 0.92443 1.06963 0.94391 1.83722 0.95305 1.09372 1.73609 0.91456 0.90940 0.89671 0.85059 0.76592 1.23311 1.21907 0.74530 0.84268 0.90260 0.90112 0.87495 0.75002 0.91919 0.89436 0.91474 0.91372 0.88202 0.91226 0.91579 0.89364 0.92146 0.88566 0.83107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.02 8.92 71.24 0.64 0.66 16 2 C -0.26 -0.71 6.50 24.58 0.16 -0.55 16 3 C 0.05 0.25 5.91 41.41 0.24 0.49 16 4 C -0.04 -0.11 2.94 71.24 0.21 0.10 16 5 O -0.53 -1.26 10.17 -148.98 -1.51 -2.77 16 6 Si 0.78 3.08 32.09 68.60 2.20 5.28 16 7 N -0.56 -3.03 8.95 -189.85 -1.70 -4.73 16 8 C 0.31 0.62 8.24 179.32 1.48 2.09 16 9 N -0.67 1.75 5.34 -327.89 -1.75 0.00 16 10 C 0.12 -1.00 4.31 45.52 0.20 -0.81 16 11 H 0.12 -1.19 7.06 -2.39 -0.02 -1.21 16 12 C -0.16 1.50 7.33 31.12 0.23 1.73 16 13 C 0.08 -0.59 1.73 -10.27 -0.02 -0.61 16 14 F -0.20 0.38 15.50 44.97 0.70 1.07 16 15 C 0.13 -0.69 5.43 86.38 0.47 -0.22 16 16 N -0.70 0.37 5.45 -590.86 -3.22 -2.85 16 17 C 0.65 3.54 8.06 129.79 1.05 4.58 16 18 O -0.59 -5.70 11.88 19.80 0.24 -5.47 16 19 O -0.37 -1.97 9.94 -55.49 -0.55 -2.53 16 20 C 0.13 0.31 1.13 -10.80 -0.01 0.30 16 21 C -0.18 -0.36 8.37 71.98 0.60 0.24 16 22 C -0.14 0.29 8.85 71.98 0.64 0.93 16 23 C -0.18 -0.48 8.37 71.98 0.60 0.12 16 24 C -0.14 1.55 7.28 31.12 0.23 1.77 16 25 S 0.13 -0.04 21.69 -56.49 -1.23 -1.26 16 26 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.08 -0.14 6.37 -2.39 -0.02 -0.15 16 29 H 0.13 0.14 7.96 -2.39 -0.02 0.12 16 30 H 0.38 -0.88 8.12 -74.06 -0.60 -1.48 16 31 H -0.31 -3.14 7.11 99.48 0.71 -2.44 16 32 H -0.29 -2.59 7.11 99.48 0.71 -1.88 16 33 H 0.42 -0.75 7.90 -92.71 -0.73 -1.48 16 34 H 0.14 -1.85 7.90 -2.38 -0.02 -1.87 16 35 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.11 -0.81 7.85 -2.39 -0.02 -0.83 16 38 H 0.41 -0.88 8.14 -92.71 -0.75 -1.64 16 39 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.07 0.44 5.88 -2.39 -0.01 0.43 16 42 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.07 0.49 5.88 -2.39 -0.01 0.48 16 46 H 0.09 -0.08 8.14 -2.38 -0.02 -0.10 16 47 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 49 H 0.15 -2.43 8.10 -2.39 -0.02 -2.45 16 Total: 0.00 -18.47 407.46 -1.17 -19.64 By element: Atomic # 1 Polarization: -16.17 SS G_CDS: -1.04 Total: -17.22 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 6.71 Total: 10.83 kcal Atomic # 7 Polarization: -0.91 SS G_CDS: -6.67 Total: -7.58 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -1.83 Total: -10.77 kcal Atomic # 9 Polarization: 0.38 SS G_CDS: 0.70 Total: 1.07 kcal Atomic # 14 Polarization: 3.08 SS G_CDS: 2.20 Total: 5.28 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.23 Total: -1.26 kcal Total: -18.47 -1.17 -19.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15734492_15704122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.452 kcal (2) G-P(sol) polarization free energy of solvation -18.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds