Wall clock time and date at job start Tue Mar 9 2021 14:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86299 * 109.47549 * 2 1 4 4 H 1.48506 * 109.46864 * 299.99703 * 3 2 1 5 5 H 1.48500 * 109.47076 * 59.99605 * 3 2 1 6 6 H 1.48496 * 109.47400 * 179.97438 * 3 2 1 7 7 C 1.50700 * 109.47351 * 239.99467 * 2 1 3 8 8 C 1.38607 * 120.72047 * 300.00589 * 7 2 1 9 9 N 1.32278 * 119.19534 * 180.02562 * 8 7 2 10 10 C 1.32496 * 120.74113 * 0.02562 * 9 8 7 11 11 N 1.38410 * 119.21896 * 180.02562 * 10 9 8 12 12 C 1.46495 * 120.00276 * 179.97438 * 11 10 9 13 13 C 1.52571 * 108.90326 * 277.83180 * 12 11 10 14 14 C 1.54365 * 109.19425 * 161.48686 * 13 12 11 15 15 Si 1.85205 * 107.06579 * 56.70661 * 14 13 12 16 16 C 1.87770 * 111.37790 * 81.20532 * 15 14 13 17 17 C 1.56398 * 98.96260 * 98.20023 * 16 15 14 18 18 C 1.53774 * 109.79196 * 39.36404 * 17 16 15 19 19 C 1.55687 * 111.39459 * 312.19944 * 18 17 16 20 20 C 1.85196 * 110.01674 * 317.20668 * 15 14 13 21 21 C 1.52566 * 108.90704 * 154.99774 * 12 11 10 22 22 N 1.32492 * 121.56336 * 0.26817 * 10 9 8 23 23 C 1.32275 * 120.74421 * 359.44693 * 22 10 9 24 24 H 0.96702 * 113.99567 * 60.00434 * 1 2 3 25 25 H 1.09007 * 109.46969 * 119.99457 * 2 1 3 26 26 H 1.07998 * 120.40190 * 359.97438 * 8 7 2 27 27 H 0.96997 * 119.99297 * 359.97438 * 11 10 9 28 28 H 1.09006 * 108.80114 * 36.41059 * 12 11 10 29 29 H 1.09004 * 109.51275 * 281.39408 * 13 12 11 30 30 H 1.08998 * 109.52186 * 41.56784 * 13 12 11 31 31 H 1.09003 * 109.92944 * 297.31879 * 14 13 12 32 32 H 1.08993 * 109.93538 * 176.10282 * 14 13 12 33 33 H 1.09004 * 111.49459 * 215.64075 * 16 15 14 34 34 H 1.09004 * 111.50040 * 340.76012 * 16 15 14 35 35 H 1.09006 * 109.41793 * 279.27257 * 17 16 15 36 36 H 1.08993 * 109.42031 * 159.46403 * 17 16 15 37 37 H 1.08995 * 109.11149 * 191.68272 * 18 17 16 38 38 H 1.09008 * 109.10229 * 72.70352 * 18 17 16 39 39 H 1.08997 * 111.14371 * 270.07685 * 19 18 17 40 40 H 1.09000 * 111.18346 * 145.88381 * 19 18 17 41 41 H 1.09008 * 109.93262 * 283.39961 * 20 15 14 42 42 H 1.09000 * 110.00618 * 162.22772 * 20 15 14 43 43 H 1.08998 * 109.51359 * 318.42933 * 21 12 11 44 44 H 1.08998 * 109.51516 * 78.53734 * 21 12 11 45 45 H 1.08000 * 120.40676 * 180.25166 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 1.5552 2.4564 -1.2126 5 1 1.5551 2.4565 1.2125 6 1 3.5351 1.7564 0.0006 7 6 1.9314 -0.7105 -1.2304 8 6 1.6056 -2.0373 -1.4645 9 7 2.0635 -2.6315 -2.5540 10 6 2.8251 -1.9731 -3.4153 11 7 3.2865 -2.6256 -4.5454 12 6 4.1293 -1.9139 -5.5094 13 6 3.2361 -1.0982 -6.4392 14 6 4.0841 -0.0100 -7.1319 15 14 5.4682 -0.8749 -8.0073 16 6 4.9064 -1.5667 -9.6600 17 6 5.4251 -0.4228 -10.5920 18 6 6.7971 0.0675 -10.1004 19 6 6.7896 0.3313 -8.5661 20 6 6.1723 -2.2019 -6.9243 21 6 4.9807 -2.9291 -6.2658 22 7 3.1594 -0.7063 -3.2182 23 6 2.7304 -0.0518 -2.1518 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5138 0.8901 26 1 0.9862 -2.5795 -0.7655 27 1 3.0518 -3.5541 -4.6990 28 1 4.7876 -1.2353 -4.9668 29 1 2.7995 -1.7540 -7.1925 30 1 2.4416 -0.6272 -5.8604 31 1 4.4868 0.6770 -6.3876 32 1 3.4731 0.5357 -7.8507 33 1 5.3947 -2.5156 -9.8826 34 1 3.8213 -1.6587 -9.7066 35 1 4.7173 0.4060 -10.5767 36 1 5.5185 -0.7995 -11.6105 37 1 7.0532 0.9908 -10.6199 38 1 7.5488 -0.6882 -10.3288 39 1 6.5025 1.3593 -8.3453 40 1 7.7549 0.0910 -8.1204 41 1 6.8067 -1.7577 -6.1571 42 1 6.7512 -2.9044 -7.5238 43 1 5.3525 -3.6822 -5.5710 44 1 4.3764 -3.4100 -7.0349 45 1 3.0029 0.9819 -1.9985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_15739292_12175864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:31:16 Heat of formation + Delta-G solvation = -27.473252 kcal Electronic energy + Delta-G solvation = -23336.165434 eV Core-core repulsion = 20090.405322 eV Total energy + Delta-G solvation = -3245.760112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.05510 -39.09382 -37.84431 -36.22391 -34.88794 -34.53429 -32.18707 -31.95159 -29.77874 -27.51078 -26.06197 -25.57144 -24.69153 -23.66004 -23.00149 -21.70694 -20.91928 -19.36474 -18.68676 -18.05314 -16.64152 -16.57352 -16.22860 -16.14160 -15.99576 -15.93154 -15.68548 -15.46340 -15.05491 -14.74339 -14.30093 -14.27734 -13.83824 -13.46996 -13.33554 -13.24312 -13.07838 -12.82092 -12.58611 -12.29900 -12.28030 -12.20457 -12.19509 -12.00862 -11.87283 -11.75653 -11.67086 -11.42260 -11.25199 -10.58621 -10.41660 -10.34384 -10.28269 -9.93580 -9.04587 0.10887 0.21545 1.09513 1.37521 1.43433 1.65039 1.75725 1.80500 1.86217 1.89015 2.56806 2.88397 3.17487 3.41446 3.62670 3.69152 3.74600 3.79387 4.01991 4.06245 4.08853 4.14955 4.24640 4.26525 4.35117 4.40138 4.56077 4.57912 4.59348 4.62377 4.69887 4.79140 4.82929 5.01501 5.03906 5.06535 5.12760 5.13976 5.21458 5.25643 5.29401 5.33288 5.41157 5.46150 5.49548 5.84244 6.07405 6.47086 6.49250 7.35617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.058 4.058 3 Si 0.938 3.062 4 H -0.249 1.249 5 H -0.248 1.248 6 H -0.248 1.248 7 C -0.297 4.297 8 C 0.226 3.774 9 N -0.570 5.570 10 C 0.568 3.432 11 N -0.693 5.693 12 C 0.149 3.851 13 C -0.115 4.115 14 C -0.404 4.404 15 Si 0.991 3.009 16 C -0.404 4.404 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.408 4.408 20 C -0.405 4.405 21 C -0.118 4.118 22 N -0.559 5.559 23 C 0.191 3.809 24 H 0.376 0.624 25 H 0.119 0.881 26 H 0.172 0.828 27 H 0.413 0.587 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 0.686 -0.834 1.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.170 4.170 3 Si 0.761 3.239 4 H -0.173 1.173 5 H -0.172 1.172 6 H -0.172 1.172 7 C -0.305 4.305 8 C 0.057 3.943 9 N -0.292 5.292 10 C 0.211 3.789 11 N -0.328 5.328 12 C 0.044 3.956 13 C -0.154 4.154 14 C -0.491 4.491 15 Si 1.185 2.815 16 C -0.491 4.491 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.494 4.494 20 C -0.492 4.492 21 C -0.156 4.156 22 N -0.281 5.281 23 C 0.023 3.977 24 H 0.223 0.777 25 H 0.137 0.863 26 H 0.189 0.811 27 H 0.251 0.749 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.714 0.809 -1.219 2.253 hybrid contribution -0.591 -0.069 0.062 0.598 sum 1.123 0.740 -1.156 1.774 Atomic orbital electron populations 1.86518 1.17221 1.81520 1.49137 1.24617 0.84953 1.10085 0.97364 0.85842 0.80675 0.75522 0.81885 1.17278 1.17189 1.17200 1.21680 1.08293 0.98590 1.01985 1.22831 0.90157 0.90473 0.90838 1.68008 1.16075 1.39348 1.05749 1.19412 0.86788 0.85678 0.86985 1.44405 1.54142 1.14581 1.19676 1.21131 0.91309 0.93892 0.89261 1.21696 0.98480 0.96981 0.98240 1.26141 1.11857 1.04056 1.07039 0.79775 0.67311 0.67452 0.66959 1.26661 1.04407 1.01593 1.16430 1.22021 0.96447 0.97627 0.99818 1.21839 0.97300 1.01173 0.95305 1.26496 1.12275 1.10346 1.00289 1.26142 1.01795 1.11933 1.09283 1.21583 0.96394 0.97815 0.99795 1.67940 1.28139 1.08538 1.23521 1.22798 0.88956 0.98912 0.87071 0.77671 0.86292 0.81109 0.74921 0.88866 0.91726 0.91341 0.89965 0.90193 0.90354 0.90382 0.91858 0.91700 0.91959 0.92028 0.90407 0.90315 0.90109 0.89732 0.90879 0.90898 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.38 12.79 -35.23 -0.45 -0.07 16 2 C -0.06 0.08 2.85 36.01 0.10 0.18 16 3 Si 0.94 -1.37 25.15 -169.99 -4.28 -5.65 16 4 H -0.25 0.31 7.11 56.52 0.40 0.71 16 5 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 6 H -0.25 0.23 7.11 56.52 0.40 0.63 16 7 C -0.30 -0.06 5.40 -104.35 -0.56 -0.62 16 8 C 0.23 0.26 10.92 -17.22 -0.19 0.07 16 9 N -0.57 -1.71 10.46 -13.93 -0.15 -1.86 16 10 C 0.57 1.63 8.18 -322.80 -2.64 -1.01 16 11 N -0.69 -0.59 5.18 -56.23 -0.29 -0.88 16 12 C 0.15 -0.04 1.95 -68.37 -0.13 -0.18 16 13 C -0.12 0.03 5.24 -26.24 -0.14 -0.10 16 14 C -0.40 0.49 4.96 37.87 0.19 0.68 16 15 Si 0.99 -2.40 10.57 -169.99 -1.80 -4.19 16 16 C -0.40 0.54 5.95 38.98 0.23 0.77 16 17 C -0.12 0.07 5.97 -24.50 -0.15 -0.08 16 18 C -0.12 0.06 6.10 -24.90 -0.15 -0.10 16 19 C -0.41 0.46 5.84 38.59 0.23 0.68 16 20 C -0.40 0.84 4.95 37.86 0.19 1.03 16 21 C -0.12 0.20 5.11 -26.25 -0.13 0.07 16 22 N -0.56 -1.55 9.16 -13.93 -0.13 -1.67 16 23 C 0.19 0.21 9.92 -17.22 -0.17 0.03 16 24 H 0.38 -1.34 8.70 45.56 0.40 -0.95 16 25 H 0.12 -0.28 7.96 -51.93 -0.41 -0.69 16 26 H 0.17 -0.14 8.06 -52.49 -0.42 -0.56 16 27 H 0.41 -0.14 8.69 -40.82 -0.35 -0.50 16 28 H 0.09 0.08 7.21 -51.93 -0.37 -0.30 16 29 H 0.06 -0.07 7.76 -51.93 -0.40 -0.47 16 30 H 0.07 0.12 7.87 -51.93 -0.41 -0.29 16 31 H 0.08 -0.07 7.97 -51.93 -0.41 -0.48 16 32 H 0.08 -0.10 7.97 -51.93 -0.41 -0.51 16 33 H 0.08 -0.11 8.04 -51.93 -0.42 -0.52 16 34 H 0.08 -0.11 8.04 -51.93 -0.42 -0.52 16 35 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 36 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 37 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 38 H 0.06 -0.04 8.14 -51.92 -0.42 -0.46 16 39 H 0.08 -0.08 8.03 -51.93 -0.42 -0.50 16 40 H 0.08 -0.10 8.03 -51.93 -0.42 -0.52 16 41 H 0.08 -0.15 7.97 -51.92 -0.41 -0.57 16 42 H 0.08 -0.20 7.97 -51.93 -0.41 -0.61 16 43 H 0.07 -0.10 8.13 -51.93 -0.42 -0.52 16 44 H 0.07 -0.19 7.76 -51.93 -0.40 -0.59 16 45 H 0.16 -0.14 5.04 -52.49 -0.26 -0.40 16 LS Contribution 351.73 15.07 5.30 5.30 Total: 0.00 -5.21 351.73 -12.00 -17.21 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: -6.88 Total: -9.62 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -3.33 Total: 1.44 kcal Atomic # 7 Polarization: -3.85 SS G_CDS: -0.56 Total: -4.42 kcal Atomic # 8 Polarization: 0.38 SS G_CDS: -0.45 Total: -0.07 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: -6.07 Total: -9.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -5.21 -12.00 -17.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739292_12175864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.261 kcal (2) G-P(sol) polarization free energy of solvation -5.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds