Wall clock time and date at job start Tue Mar 9 2021 14:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86299 * 109.47549 * 2 1 4 4 H 1.48506 * 109.46864 * 299.99703 * 3 2 1 5 5 H 1.48500 * 109.47076 * 59.99605 * 3 2 1 6 6 H 1.48496 * 109.47400 * 179.97438 * 3 2 1 7 7 C 1.50700 * 109.47351 * 239.99467 * 2 1 3 8 8 C 1.38607 * 120.72047 * 300.00589 * 7 2 1 9 9 N 1.32278 * 119.19534 * 180.02562 * 8 7 2 10 10 C 1.32496 * 120.74113 * 0.02562 * 9 8 7 11 11 N 1.38410 * 119.21896 * 180.02562 * 10 9 8 12 12 C 1.46495 * 120.00276 * 179.97438 * 11 10 9 13 13 C 1.52571 * 108.90326 * 277.83180 * 12 11 10 14 14 C 1.54365 * 109.19425 * 161.48686 * 13 12 11 15 15 Si 1.85205 * 107.06579 * 56.70661 * 14 13 12 16 16 C 1.87770 * 111.37790 * 81.20532 * 15 14 13 17 17 C 1.56398 * 98.96260 * 98.20023 * 16 15 14 18 18 C 1.53774 * 109.79196 * 39.36404 * 17 16 15 19 19 C 1.55687 * 111.39459 * 312.19944 * 18 17 16 20 20 C 1.85196 * 110.01674 * 317.20668 * 15 14 13 21 21 C 1.52566 * 108.90704 * 154.99774 * 12 11 10 22 22 N 1.32492 * 121.56336 * 0.26817 * 10 9 8 23 23 C 1.32275 * 120.74421 * 359.44693 * 22 10 9 24 24 H 0.96702 * 113.99567 * 60.00434 * 1 2 3 25 25 H 1.09007 * 109.46969 * 119.99457 * 2 1 3 26 26 H 1.07998 * 120.40190 * 359.97438 * 8 7 2 27 27 H 0.96997 * 119.99297 * 359.97438 * 11 10 9 28 28 H 1.09006 * 108.80114 * 36.41059 * 12 11 10 29 29 H 1.09004 * 109.51275 * 281.39408 * 13 12 11 30 30 H 1.08998 * 109.52186 * 41.56784 * 13 12 11 31 31 H 1.09003 * 109.92944 * 297.31879 * 14 13 12 32 32 H 1.08993 * 109.93538 * 176.10282 * 14 13 12 33 33 H 1.09004 * 111.49459 * 215.64075 * 16 15 14 34 34 H 1.09004 * 111.50040 * 340.76012 * 16 15 14 35 35 H 1.09006 * 109.41793 * 279.27257 * 17 16 15 36 36 H 1.08993 * 109.42031 * 159.46403 * 17 16 15 37 37 H 1.08995 * 109.11149 * 191.68272 * 18 17 16 38 38 H 1.09008 * 109.10229 * 72.70352 * 18 17 16 39 39 H 1.08997 * 111.14371 * 270.07685 * 19 18 17 40 40 H 1.09000 * 111.18346 * 145.88381 * 19 18 17 41 41 H 1.09008 * 109.93262 * 283.39961 * 20 15 14 42 42 H 1.09000 * 110.00618 * 162.22772 * 20 15 14 43 43 H 1.08998 * 109.51359 * 318.42933 * 21 12 11 44 44 H 1.08998 * 109.51516 * 78.53734 * 21 12 11 45 45 H 1.08000 * 120.40676 * 180.25166 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 1.5552 2.4564 -1.2126 5 1 1.5551 2.4565 1.2125 6 1 3.5351 1.7564 0.0006 7 6 1.9314 -0.7105 -1.2304 8 6 1.6056 -2.0373 -1.4645 9 7 2.0635 -2.6315 -2.5540 10 6 2.8251 -1.9731 -3.4153 11 7 3.2865 -2.6256 -4.5454 12 6 4.1293 -1.9139 -5.5094 13 6 3.2361 -1.0982 -6.4392 14 6 4.0841 -0.0100 -7.1319 15 14 5.4682 -0.8749 -8.0073 16 6 4.9064 -1.5667 -9.6600 17 6 5.4251 -0.4228 -10.5920 18 6 6.7971 0.0675 -10.1004 19 6 6.7896 0.3313 -8.5661 20 6 6.1723 -2.2019 -6.9243 21 6 4.9807 -2.9291 -6.2658 22 7 3.1594 -0.7063 -3.2182 23 6 2.7304 -0.0518 -2.1518 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5138 0.8901 26 1 0.9862 -2.5795 -0.7655 27 1 3.0518 -3.5541 -4.6990 28 1 4.7876 -1.2353 -4.9668 29 1 2.7995 -1.7540 -7.1925 30 1 2.4416 -0.6272 -5.8604 31 1 4.4868 0.6770 -6.3876 32 1 3.4731 0.5357 -7.8507 33 1 5.3947 -2.5156 -9.8826 34 1 3.8213 -1.6587 -9.7066 35 1 4.7173 0.4060 -10.5767 36 1 5.5185 -0.7995 -11.6105 37 1 7.0532 0.9908 -10.6199 38 1 7.5488 -0.6882 -10.3288 39 1 6.5025 1.3593 -8.3453 40 1 7.7549 0.0910 -8.1204 41 1 6.8067 -1.7577 -6.1571 42 1 6.7512 -2.9044 -7.5238 43 1 5.3525 -3.6822 -5.5710 44 1 4.3764 -3.4100 -7.0349 45 1 3.0029 0.9819 -1.9985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15739292_12175864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:31:15 Heat of formation + Delta-G solvation = -19.137382 kcal Electronic energy + Delta-G solvation = -23335.803964 eV Core-core repulsion = 20090.405322 eV Total energy + Delta-G solvation = -3245.398642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.158 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.12576 -39.06880 -37.78130 -36.14588 -34.91913 -34.59201 -32.11092 -31.93688 -29.67635 -27.47245 -26.07572 -25.56969 -24.60830 -23.58190 -23.00840 -21.65742 -20.85773 -19.39737 -18.72787 -18.01829 -16.62217 -16.56554 -16.20536 -16.08412 -15.97526 -15.87377 -15.63314 -15.42597 -14.99576 -14.73290 -14.30138 -14.18404 -13.75170 -13.38896 -13.26444 -13.20239 -12.98383 -12.75500 -12.51163 -12.23058 -12.20414 -12.16199 -12.11356 -11.92990 -11.88449 -11.77119 -11.65160 -11.35324 -11.26115 -10.55356 -10.30456 -10.23985 -10.17642 -10.00034 -9.08809 0.03686 0.13886 1.19831 1.47808 1.52309 1.76689 1.87200 1.92741 1.94174 1.98408 2.68286 2.79495 3.13842 3.54961 3.62467 3.70786 3.76433 3.81634 4.08090 4.14123 4.15716 4.22754 4.26051 4.34012 4.41740 4.51975 4.61221 4.66917 4.69347 4.70196 4.75654 4.84057 4.86862 5.10873 5.13673 5.16173 5.18244 5.21906 5.28141 5.29057 5.37093 5.46328 5.47549 5.55315 5.58593 5.78790 6.04974 6.42426 6.71547 7.27826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.288 4.288 8 C 0.216 3.784 9 N -0.590 5.590 10 C 0.552 3.448 11 N -0.690 5.690 12 C 0.151 3.849 13 C -0.113 4.113 14 C -0.414 4.414 15 Si 1.054 2.946 16 C -0.414 4.414 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.422 4.422 20 C -0.410 4.410 21 C -0.116 4.116 22 N -0.576 5.576 23 C 0.179 3.821 24 H 0.388 0.612 25 H 0.131 0.869 26 H 0.188 0.812 27 H 0.417 0.583 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 0.317 -0.769 1.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.164 4.164 3 Si 0.794 3.206 4 H -0.176 1.176 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.296 4.296 8 C 0.049 3.951 9 N -0.312 5.312 10 C 0.195 3.805 11 N -0.326 5.326 12 C 0.047 3.953 13 C -0.151 4.151 14 C -0.500 4.500 15 Si 1.244 2.756 16 C -0.500 4.500 17 C -0.165 4.165 18 C -0.161 4.161 19 C -0.507 4.507 20 C -0.497 4.497 21 C -0.154 4.154 22 N -0.299 5.299 23 C 0.012 3.988 24 H 0.237 0.763 25 H 0.149 0.851 26 H 0.205 0.795 27 H 0.256 0.744 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.769 0.452 -1.169 2.168 hybrid contribution -0.637 0.096 0.061 0.647 sum 1.132 0.547 -1.108 1.676 Atomic orbital electron populations 1.86493 1.17423 1.81812 1.50022 1.24647 0.84740 1.10013 0.97025 0.85398 0.79819 0.74854 0.80550 1.17590 1.19368 1.17895 1.21792 1.07494 0.98231 1.02126 1.23189 0.90181 0.91061 0.90697 1.68031 1.16718 1.39962 1.06500 1.19666 0.87248 0.85992 0.87613 1.44494 1.53978 1.14782 1.19363 1.21161 0.91091 0.94082 0.88994 1.21665 0.98017 0.97269 0.98196 1.26316 1.12558 1.04041 1.07056 0.78827 0.65327 0.65959 0.65453 1.26787 1.04625 1.01522 1.17017 1.22070 0.96471 0.98045 0.99898 1.21884 0.97453 1.01007 0.95757 1.26670 1.13219 1.10859 0.99992 1.26216 1.01780 1.12250 1.09417 1.21586 0.96431 0.97391 0.99968 1.67956 1.28825 1.08732 1.24347 1.23140 0.89091 0.99610 0.86952 0.76332 0.85141 0.79505 0.74440 0.90122 0.90734 0.93621 0.90501 0.90175 0.89982 0.90175 0.91794 0.92072 0.92524 0.91864 0.90648 0.90060 0.90154 0.88871 0.91002 0.89574 0.80964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.09 12.79 -148.98 -1.91 -0.82 16 2 C -0.05 0.17 2.85 71.24 0.20 0.37 16 3 Si 0.97 -2.98 25.15 68.60 1.73 -1.26 16 4 H -0.25 0.68 7.11 99.48 0.71 1.39 16 5 H -0.27 -0.11 7.11 99.48 0.71 0.60 16 6 H -0.25 0.51 7.11 99.48 0.71 1.22 16 7 C -0.29 -0.11 5.40 -19.69 -0.11 -0.22 16 8 C 0.22 0.53 10.92 84.71 0.93 1.46 16 9 N -0.59 -3.93 10.46 -197.98 -2.07 -6.00 16 10 C 0.55 3.67 8.18 261.48 2.14 5.81 16 11 N -0.69 -1.68 5.18 -331.80 -1.72 -3.40 16 12 C 0.15 -0.02 1.95 44.71 0.09 0.06 16 13 C -0.11 0.01 5.24 30.92 0.16 0.17 16 14 C -0.41 0.85 4.96 72.45 0.36 1.21 16 15 Si 1.05 -5.43 10.57 68.60 0.72 -4.70 16 16 C -0.41 1.33 5.95 73.17 0.44 1.76 16 17 C -0.13 0.14 5.97 32.04 0.19 0.33 16 18 C -0.12 0.09 6.10 31.78 0.19 0.29 16 19 C -0.42 0.94 5.84 72.91 0.43 1.36 16 20 C -0.41 2.00 4.95 72.44 0.36 2.36 16 21 C -0.12 0.45 5.11 30.91 0.16 0.61 16 22 N -0.58 -3.72 9.16 -197.98 -1.81 -5.54 16 23 C 0.18 0.46 9.92 84.71 0.84 1.30 16 24 H 0.39 -2.93 8.70 -74.06 -0.64 -3.58 16 25 H 0.13 -0.73 7.96 -2.38 -0.02 -0.74 16 26 H 0.19 -0.35 8.06 -2.91 -0.02 -0.38 16 27 H 0.42 -0.06 8.69 -92.71 -0.81 -0.86 16 28 H 0.08 0.20 7.21 -2.38 -0.02 0.18 16 29 H 0.07 -0.17 7.76 -2.38 -0.02 -0.19 16 30 H 0.04 0.22 7.87 -2.39 -0.02 0.20 16 31 H 0.08 -0.07 7.97 -2.39 -0.02 -0.09 16 32 H 0.08 -0.17 7.97 -2.39 -0.02 -0.19 16 33 H 0.08 -0.30 8.04 -2.38 -0.02 -0.32 16 34 H 0.08 -0.27 8.04 -2.38 -0.02 -0.29 16 35 H 0.06 -0.09 8.14 -2.38 -0.02 -0.11 16 36 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 39 H 0.07 -0.13 8.03 -2.39 -0.02 -0.15 16 40 H 0.08 -0.22 8.03 -2.39 -0.02 -0.24 16 41 H 0.08 -0.35 7.97 -2.38 -0.02 -0.37 16 42 H 0.09 -0.56 7.97 -2.39 -0.02 -0.58 16 43 H 0.07 -0.23 8.13 -2.39 -0.02 -0.25 16 44 H 0.09 -0.55 7.76 -2.39 -0.02 -0.56 16 45 H 0.17 -0.27 5.04 -2.91 -0.01 -0.28 16 Total: 0.00 -12.20 351.73 1.60 -10.60 By element: Atomic # 1 Polarization: -6.05 SS G_CDS: 0.29 Total: -5.76 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 6.37 Total: 16.88 kcal Atomic # 7 Polarization: -9.34 SS G_CDS: -5.60 Total: -14.94 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: -1.91 Total: -0.82 kcal Atomic # 14 Polarization: -8.41 SS G_CDS: 2.45 Total: -5.96 kcal Total: -12.20 1.60 -10.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739292_12175864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.540 kcal (2) G-P(sol) polarization free energy of solvation -12.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds