Wall clock time and date at job start Tue Mar 9 2021 14:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86303 * 109.47137 * 2 1 4 4 C 1.86299 * 109.47427 * 240.00127 * 2 1 3 5 5 C 1.89999 * 109.47119 * 120.00005 * 2 1 3 6 6 C 3.07398 * 109.47045 * 120.00023 * 2 1 3 7 7 C 4.50601 * 109.47092 * 119.99957 * 2 1 3 8 8 C 1.33571 * 124.38933 * 320.17642 * 7 6 5 9 9 C 1.44687 * 114.56401 * 180.02562 * 8 7 6 10 10 C 1.41839 * 130.33069 * 180.02562 * 9 8 7 11 11 O 1.35431 * 120.51898 * 0.02562 * 10 9 8 12 12 C 1.35897 * 117.99610 * 175.14174 * 11 10 9 13 13 C 1.38742 * 120.04983 * 76.85849 * 12 11 10 14 14 C 1.38161 * 119.96175 * 179.97438 * 13 12 11 15 15 C 1.50702 * 119.96554 * 179.97438 * 14 13 12 16 16 O 1.42900 * 109.46866 * 65.00615 * 15 14 13 17 17 Si 1.86297 * 109.46988 * 185.00328 * 15 14 13 18 18 H 1.48499 * 109.47270 * 60.00502 * 17 15 14 19 19 H 1.48503 * 109.47223 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47717 * 300.00410 * 17 15 14 21 21 C 1.38235 * 120.06916 * 0.02562 * 14 13 12 22 22 C 1.38383 * 120.10213 * 359.97438 * 21 14 13 23 23 Br 1.89101 * 119.98138 * 179.97438 * 22 21 14 24 24 C 1.38210 * 120.03784 * 359.72628 * 22 21 14 25 25 N 1.32295 * 118.95436 * 179.97438 * 10 9 8 26 26 C 1.32084 * 121.22709 * 0.02562 * 25 10 9 27 27 N 1.31329 * 122.21312 * 359.97438 * 26 25 10 28 28 C 1.33809 * 121.03482 * 359.97438 * 27 26 25 29 29 S 1.75350 * 124.38447 * 140.18293 * 7 6 5 30 30 H 1.09002 * 109.47221 * 300.00500 * 1 2 3 31 31 H 1.09008 * 109.47071 * 59.99715 * 1 2 3 32 32 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47191 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47353 * 300.00117 * 3 2 1 35 35 H 1.09006 * 109.47102 * 60.00283 * 3 2 1 36 36 H 1.09003 * 109.46916 * 300.00230 * 4 2 1 37 37 H 1.09001 * 109.47147 * 59.99406 * 4 2 1 38 38 H 1.08994 * 109.47329 * 179.97438 * 4 2 1 39 39 H 1.08004 * 122.71943 * 359.97438 * 8 7 6 40 40 H 1.08000 * 120.01592 * 0.02562 * 13 12 11 41 41 H 1.08998 * 109.47244 * 305.00545 * 15 14 13 42 42 H 0.96709 * 113.99937 * 59.99514 * 16 15 14 43 43 H 1.07995 * 119.94849 * 179.97438 * 21 14 13 44 44 H 1.08000 * 120.03234 * 180.27780 * 24 22 21 45 45 H 1.08000 * 118.89367 * 180.27996 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4963 -0.8957 1.5513 6 6 2.8876 -1.4491 2.5099 7 6 3.3649 -2.1241 3.6792 8 6 2.5924 -2.4979 4.7027 9 6 3.2971 -3.1654 5.7757 10 6 2.8159 -3.6940 7.0008 11 8 1.5010 -3.6139 7.3151 12 6 1.0788 -4.2248 8.4532 13 6 1.3218 -3.6391 9.6873 14 6 0.8913 -4.2614 10.8432 15 6 1.1557 -3.6256 12.1837 16 8 0.4393 -2.3925 12.2756 17 14 0.5916 -4.7740 13.5378 18 1 1.3361 -6.0553 13.4423 19 1 0.8516 -4.1472 14.8587 20 1 -0.8630 -5.0347 13.3919 21 6 0.2192 -5.4672 10.7715 22 6 -0.0247 -6.0539 9.5421 23 35 -0.9437 -7.7038 9.4481 24 6 0.3986 -5.4320 8.3827 25 7 3.6715 -4.2673 7.8311 26 6 4.9566 -4.3534 7.5383 27 7 5.4527 -3.8802 6.4182 28 6 4.6676 -3.2835 5.5137 29 16 5.0394 -2.5669 3.9528 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1207 2.2703 -0.8899 35 1 2.1207 2.2703 0.8901 36 1 2.1207 -1.9059 -1.5211 37 1 2.1207 -0.3644 -2.4111 38 1 3.5740 -0.8778 -1.5213 39 1 1.5281 -2.3160 4.7277 40 1 1.8465 -2.6968 9.7441 41 1 2.2234 -3.4343 12.2908 42 1 -0.5192 -2.4871 12.1886 43 1 -0.1161 -5.9522 11.6763 44 1 0.2043 -5.8878 7.4230 45 1 5.6211 -4.8333 8.2416 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_17850304_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:41:52 Heat of formation + Delta-G solvation = 43.892649 kcal Electronic energy + Delta-G solvation = -30166.200623 eV Core-core repulsion = 25833.105386 eV Total energy + Delta-G solvation = -4333.095237 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 461.998 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.73873 -41.34319 -39.68863 -37.79016 -37.65467 -34.50190 -33.95255 -33.64878 -32.29301 -30.64427 -30.27701 -29.65957 -28.50905 -28.50660 -27.19234 -26.65080 -25.90285 -23.83179 -23.06453 -22.74317 -20.94993 -20.17045 -18.77391 -18.21352 -17.96288 -17.52265 -17.42222 -16.94406 -16.73499 -16.48867 -16.32657 -15.82097 -15.55991 -15.34541 -15.12842 -14.77306 -14.64886 -14.35763 -14.30243 -14.19601 -14.13082 -14.07691 -13.90396 -13.40148 -13.39136 -13.32147 -13.18271 -13.14364 -12.65104 -12.39997 -12.37198 -12.26490 -12.20915 -12.16489 -11.93525 -11.83787 -11.66235 -11.45744 -11.37626 -10.94601 -10.80772 -10.67990 -10.57349 -10.17936 -9.94390 -9.88664 -9.21335 -0.97784 -0.44110 -0.30438 -0.24265 -0.22393 0.36251 0.46652 0.55729 0.97805 1.30906 1.36417 1.39772 1.46458 1.48152 1.60936 1.80269 2.24726 2.27833 2.32779 2.43283 2.58088 2.74415 3.05993 3.19205 3.22416 3.36925 3.41791 3.61419 3.73133 3.80814 3.91406 4.06051 4.21574 4.27594 4.41366 4.62238 4.62697 4.63533 4.66980 4.67226 4.67277 4.69219 4.72296 4.76732 4.79201 4.89513 4.97734 5.20099 5.36887 5.46428 5.46677 5.48192 5.99990 6.37801 6.46171 6.77756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.146 2.854 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.353 4.353 6 C -0.129 4.129 7 C -0.082 4.082 8 C -0.062 4.062 9 C -0.186 4.186 10 C 0.418 3.582 11 O -0.230 6.230 12 C 0.091 3.909 13 C -0.061 4.061 14 C -0.100 4.100 15 C -0.079 4.079 16 O -0.534 6.534 17 Si 0.939 3.061 18 H -0.244 1.244 19 H -0.247 1.247 20 H -0.246 1.246 21 C -0.089 4.089 22 C -0.074 4.074 23 Br -0.029 7.029 24 C -0.078 4.078 25 N -0.566 5.566 26 C 0.357 3.643 27 N -0.504 5.504 28 C 0.107 3.893 29 S 0.222 5.778 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.161 0.839 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.378 0.622 43 H 0.137 0.863 44 H 0.144 0.856 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 1.427 -1.794 2.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.331 2.669 3 C -0.561 4.561 4 C -0.561 4.561 5 C -0.391 4.391 6 C -0.131 4.131 7 C -0.198 4.198 8 C -0.093 4.093 9 C -0.201 4.201 10 C 0.224 3.776 11 O -0.131 6.131 12 C 0.049 3.951 13 C -0.079 4.079 14 C -0.101 4.101 15 C -0.190 4.190 16 O -0.339 6.339 17 Si 0.761 3.239 18 H -0.167 1.167 19 H -0.170 1.170 20 H -0.170 1.170 21 C -0.108 4.108 22 C -0.154 4.154 23 Br 0.056 6.944 24 C -0.098 4.098 25 N -0.297 5.297 26 C 0.066 3.934 27 N -0.224 5.224 28 C -0.143 4.143 29 S 0.487 5.513 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.178 0.822 40 H 0.158 0.842 41 H 0.142 0.858 42 H 0.226 0.774 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.190 0.297 -1.353 1.398 hybrid contribution -1.781 0.258 0.304 1.825 sum -1.590 0.554 -1.048 1.984 Atomic orbital electron populations 1.26114 1.19772 1.05087 1.05098 0.77085 0.66139 0.64693 0.58991 1.26121 1.06795 1.18086 1.05098 1.26119 1.06795 1.08497 1.14689 1.36303 0.98554 1.00435 1.03821 1.19514 1.00719 0.98816 0.94025 1.19542 0.97492 1.06599 0.96127 1.20870 1.01255 0.97080 0.90066 1.19510 0.94552 1.09678 0.96332 1.20046 0.83981 0.86491 0.87072 1.84654 1.19686 1.68631 1.40160 1.18356 0.99473 0.92821 0.84483 1.21259 0.96784 0.99732 0.90176 1.20176 0.98865 0.94751 0.96346 1.25012 1.02039 0.93330 0.98594 1.86554 1.23294 1.28605 1.95492 0.85812 0.81378 0.78336 0.78399 1.16734 1.17006 1.17002 1.21149 0.97608 0.95136 0.96944 1.21462 1.03694 0.95267 0.94986 1.96840 1.74605 1.23897 1.99029 1.21118 0.97601 0.92438 0.98673 1.68055 1.05794 1.22406 1.33478 1.24822 0.87756 0.89972 0.90869 1.68107 1.37948 1.13280 1.03031 1.23961 0.91143 0.98785 1.00422 1.84582 1.03452 1.55587 1.07674 0.90805 0.90246 0.90812 0.90810 0.90236 0.90806 0.90805 0.90231 0.90807 0.82191 0.84153 0.85750 0.77423 0.84515 0.83783 0.77059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.27 8.65 101.05 0.87 2.14 16 2 Si 1.15 -3.89 14.26 -169.99 -2.42 -6.31 16 3 C -0.45 1.24 8.65 101.05 0.87 2.12 16 4 C -0.45 1.25 8.65 101.05 0.87 2.13 16 5 C -0.35 -0.28 12.14 29.55 0.36 0.08 16 6 C -0.13 -0.36 13.64 -38.84 -0.53 -0.89 16 7 C -0.08 -0.22 6.15 -39.29 -0.24 -0.46 16 8 C -0.06 -0.14 10.19 -38.67 -0.39 -0.53 16 9 C -0.19 -0.56 6.08 -105.31 -0.64 -1.20 16 10 C 0.42 1.19 7.52 -15.98 -0.12 1.07 16 11 O -0.23 -0.54 9.94 -2.17 -0.02 -0.56 16 12 C 0.09 0.14 5.18 -39.21 -0.20 -0.06 16 13 C -0.06 -0.04 9.23 -39.42 -0.36 -0.41 16 14 C -0.10 0.02 5.35 -104.65 -0.56 -0.53 16 15 C -0.08 0.10 2.80 36.01 0.10 0.21 16 16 O -0.53 0.35 12.83 -35.23 -0.45 -0.10 16 17 Si 0.94 -1.24 25.13 -169.99 -4.27 -5.51 16 18 H -0.24 0.18 7.11 56.52 0.40 0.58 16 19 H -0.25 -0.02 7.11 56.52 0.40 0.39 16 20 H -0.25 0.33 7.04 56.52 0.40 0.72 16 21 C -0.09 0.00 8.41 -39.53 -0.33 -0.34 16 22 C -0.07 -0.06 6.22 -39.54 -0.25 -0.30 16 23 Br -0.03 -0.02 33.70 -68.01 -2.29 -2.31 16 24 C -0.08 -0.08 9.73 -39.40 -0.38 -0.46 16 25 N -0.57 -1.33 9.18 -14.16 -0.13 -1.46 16 26 C 0.36 0.48 12.26 -92.30 -1.13 -0.65 16 27 N -0.50 -1.59 10.47 -13.26 -0.14 -1.73 16 28 C 0.11 0.36 7.69 -16.02 -0.12 0.23 16 29 S 0.22 0.49 23.16 -107.50 -2.49 -2.00 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.08 -0.27 7.96 -51.92 -0.41 -0.69 16 32 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 33 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 34 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 35 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 36 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 37 H 0.08 -0.27 7.96 -51.93 -0.41 -0.69 16 38 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 39 H 0.16 0.11 8.06 -52.48 -0.42 -0.31 16 40 H 0.14 0.09 8.06 -52.49 -0.42 -0.34 16 41 H 0.12 -0.26 7.96 -51.93 -0.41 -0.68 16 42 H 0.38 -1.47 8.70 45.56 0.40 -1.07 16 43 H 0.14 -0.14 4.86 -52.49 -0.25 -0.39 16 44 H 0.14 0.03 8.06 -52.49 -0.42 -0.40 16 45 H 0.21 -0.51 8.06 -52.49 -0.42 -0.93 16 LS Contribution 433.90 15.07 6.54 6.54 Total: 0.00 -7.01 433.90 -12.35 -19.36 By element: Atomic # 1 Polarization: -3.54 SS G_CDS: -4.48 Total: -8.03 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.19 Total: 2.13 kcal Atomic # 7 Polarization: -2.92 SS G_CDS: -0.27 Total: -3.19 kcal Atomic # 8 Polarization: -0.19 SS G_CDS: -0.47 Total: -0.66 kcal Atomic # 14 Polarization: -5.13 SS G_CDS: -6.70 Total: -11.83 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.49 Total: -2.00 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.29 Total: -2.31 kcal Total LS contribution 6.54 Total: 6.54 kcal Total: -7.01 -12.35 -19.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_17850304_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.250 kcal (2) G-P(sol) polarization free energy of solvation -7.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds