Wall clock time and date at job start Tue Mar 9 2021 14:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35997 * 117.00047 * 2 1 4 4 C 1.38523 * 120.06388 * 0.28526 * 3 2 1 5 5 C 1.38281 * 120.00778 * 180.27218 * 4 3 2 6 6 C 1.50705 * 119.92763 * 179.74220 * 5 4 3 7 7 O 1.42903 * 109.46807 * 104.49924 * 6 5 4 8 8 Si 1.86302 * 109.47182 * 344.50307 * 6 5 4 9 9 H 1.48500 * 109.47197 * 65.72486 * 8 6 5 10 10 H 1.48496 * 109.46832 * 185.72843 * 8 6 5 11 11 H 1.48502 * 109.46742 * 305.72360 * 8 6 5 12 12 C 1.38298 * 120.14372 * 359.71652 * 5 4 3 13 13 Br 1.89102 * 119.93683 * 179.97438 * 12 5 4 14 14 C 1.38348 * 120.12952 * 0.02562 * 12 5 4 15 15 C 1.38551 * 119.98636 * 359.97438 * 14 12 5 16 16 O 1.35974 * 120.06805 * 180.02562 * 15 14 12 17 17 C 1.35417 * 118.00258 * 265.65789 * 16 15 14 18 18 C 1.41833 * 120.52611 * 174.84858 * 17 16 15 19 19 C 1.44683 * 130.33102 * 359.69690 * 18 17 16 20 20 C 1.33575 * 114.56916 * 179.85662 * 19 18 17 21 21 C 1.43202 * 124.38921 * 180.17612 * 20 19 18 22 22 C 8.34872 * 143.91036 * 169.40273 * 2 1 3 23 23 Si 9.48287 * 107.65756 * 346.98093 * 15 1 2 24 24 C 1.86304 * 109.47121 * 116.17333 * 23 22 21 25 25 C 1.86304 * 109.47008 * 236.17267 * 23 22 21 26 26 C 1.86292 * 109.47251 * 356.17352 * 23 22 21 27 27 S 1.75346 * 111.22088 * 0.42029 * 20 19 18 28 28 C 1.40026 * 117.53914 * 179.97438 * 18 17 16 29 29 N 1.33818 * 119.02958 * 359.97438 * 28 18 17 30 30 C 1.31322 * 121.04232 * 0.02562 * 29 28 18 31 31 N 1.32085 * 122.21577 * 359.97438 * 30 29 28 32 32 H 1.09009 * 109.47466 * 59.99581 * 1 2 3 33 33 H 1.09004 * 109.47498 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47298 * 299.99500 * 1 2 3 35 35 H 1.07999 * 120.00266 * 0.02562 * 4 3 2 36 36 H 1.08998 * 109.46990 * 224.50238 * 6 5 4 37 37 H 0.96692 * 114.00015 * 299.99688 * 7 6 5 38 38 H 1.07995 * 120.00848 * 179.97438 * 14 12 5 39 39 H 1.08001 * 122.71779 * 0.25771 * 19 18 17 40 40 H 1.09002 * 109.47032 * 59.99979 * 24 23 22 41 41 H 1.08996 * 109.47238 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.46707 * 300.00067 * 24 23 22 43 43 H 1.08996 * 109.47303 * 59.99864 * 25 23 22 44 44 H 1.09006 * 109.47192 * 180.02562 * 25 23 22 45 45 H 1.09007 * 109.46935 * 299.99762 * 25 23 22 46 46 H 1.08996 * 109.47449 * 59.99979 * 26 23 22 47 47 H 1.09006 * 109.46966 * 180.02562 * 26 23 22 48 48 H 1.09002 * 109.47570 * 299.99585 * 26 23 22 49 49 H 1.07998 * 118.89043 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3743 0.0060 5 6 1.9222 3.6058 0.0003 6 6 1.1011 4.8695 0.0009 7 8 1.1302 5.4557 1.3038 8 14 -0.6586 4.4668 -0.4597 9 1 -1.2663 3.6211 0.5989 10 1 -1.4353 5.7253 -0.5945 11 1 -0.6768 3.7332 -1.7507 12 6 3.3032 3.6803 -0.0055 13 35 4.1572 5.3675 -0.0140 14 6 4.0611 2.5229 -0.0061 15 6 3.4365 1.2862 -0.0004 16 8 4.1798 0.1476 -0.0004 17 6 4.4467 -0.4374 -1.1922 18 6 5.3061 -1.5633 -1.2657 19 6 6.0197 -2.2664 -0.2217 20 6 6.7481 -3.3020 -0.6472 21 6 7.5325 -4.1438 0.2052 22 6 8.1755 -4.8339 0.9044 23 14 9.2164 -5.9502 2.0374 24 6 10.7638 -6.4738 1.1417 25 6 9.6785 -5.0120 3.5791 26 6 8.2270 -7.4589 2.5016 27 16 6.6247 -3.4929 -2.3859 28 6 5.5385 -2.1191 -2.5297 29 7 4.9476 -1.5717 -3.5983 30 6 4.1596 -0.5282 -3.4761 31 7 3.9091 0.0319 -2.3064 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8901 35 1 0.2147 2.3191 0.0110 36 1 1.5145 5.5718 -0.7229 37 1 0.7764 4.8853 1.9998 38 1 5.1393 2.5834 -0.0110 39 1 5.9626 -1.9811 0.8184 40 1 11.3427 -5.5911 0.8701 41 1 11.3609 -7.1136 1.7915 42 1 10.4934 -7.0227 0.2397 43 1 8.7732 -4.7056 4.1031 44 1 10.2758 -5.6520 4.2286 45 1 10.2574 -4.1293 3.3074 46 1 7.9566 -8.0079 1.5996 47 1 8.8238 -8.0989 3.1517 48 1 7.3217 -7.1527 3.0257 49 1 3.7010 -0.1141 -4.3619 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_2162980_17567452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:42:02 Heat of formation + Delta-G solvation = 13.523555 kcal Electronic energy + Delta-G solvation = -35279.496382 eV Core-core repulsion = 30470.864431 eV Total energy + Delta-G solvation = -4808.631951 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 492.013 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.73455 -41.70507 -39.92374 -39.32596 -37.72401 -37.30599 -34.42510 -33.89599 -32.99296 -32.50258 -30.47494 -30.20286 -29.64371 -28.69182 -28.49162 -28.49079 -27.24026 -26.09464 -25.40498 -23.83099 -23.09854 -22.78724 -21.02383 -20.38836 -19.36286 -18.50573 -18.22798 -17.65228 -17.43371 -17.13972 -16.91416 -16.75488 -16.67519 -16.34074 -16.20566 -15.86739 -15.45945 -15.38731 -15.29095 -14.98334 -14.42037 -14.33627 -14.27886 -14.12023 -14.06410 -13.98194 -13.95498 -13.84624 -13.38438 -13.37466 -13.16592 -13.11159 -12.93075 -12.75427 -12.59140 -12.38622 -12.35725 -12.30034 -12.16874 -12.09436 -11.96933 -11.62744 -11.38217 -11.33021 -11.10576 -10.89962 -10.78260 -10.60320 -10.53592 -10.29073 -9.84143 -9.37043 -9.15177 -0.90705 -0.47363 -0.22145 -0.19214 -0.15408 0.50346 0.56410 0.62143 0.92800 1.21995 1.34771 1.40184 1.49844 1.50886 1.63720 1.74762 1.89849 2.25557 2.28044 2.35713 2.49614 2.62603 2.81517 3.10763 3.18899 3.28887 3.30843 3.41071 3.50678 3.73096 3.82467 3.93847 3.97144 3.98818 4.19012 4.28161 4.32456 4.38880 4.49094 4.56410 4.64194 4.64280 4.68366 4.68632 4.68850 4.69037 4.71156 4.83402 4.84823 4.85549 5.09523 5.38418 5.48096 5.48138 5.54883 5.78310 6.15594 6.40483 6.50145 6.86031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.299 6.299 3 C 0.165 3.835 4 C -0.203 4.203 5 C -0.039 4.039 6 C -0.089 4.089 7 O -0.521 6.521 8 Si 0.942 3.058 9 H -0.249 1.249 10 H -0.243 1.243 11 H -0.245 1.245 12 C -0.095 4.095 13 Br -0.020 7.020 14 C -0.043 4.043 15 C 0.061 3.939 16 O -0.218 6.218 17 C 0.421 3.579 18 C -0.187 4.187 19 C -0.060 4.060 20 C -0.084 4.084 21 C -0.127 4.127 22 C -0.356 4.356 23 Si 1.145 2.855 24 C -0.453 4.453 25 C -0.453 4.453 26 C -0.453 4.453 27 S 0.218 5.782 28 C 0.108 3.892 29 N -0.506 5.506 30 C 0.357 3.643 31 N -0.566 5.566 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.376 0.624 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -2.477 2.245 3.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.211 6.211 3 C 0.118 3.882 4 C -0.222 4.222 5 C -0.042 4.042 6 C -0.200 4.200 7 O -0.325 6.325 8 Si 0.763 3.237 9 H -0.173 1.173 10 H -0.167 1.167 11 H -0.168 1.168 12 C -0.176 4.176 13 Br 0.065 6.935 14 C -0.063 4.063 15 C 0.017 3.983 16 O -0.119 6.119 17 C 0.227 3.773 18 C -0.201 4.201 19 C -0.090 4.090 20 C -0.200 4.200 21 C -0.129 4.129 22 C -0.394 4.394 23 Si 1.331 2.669 24 C -0.561 4.561 25 C -0.561 4.561 26 C -0.561 4.561 27 S 0.483 5.517 28 C -0.143 4.143 29 N -0.226 5.226 30 C 0.065 3.935 31 N -0.297 5.297 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.223 0.777 38 H 0.168 0.832 39 H 0.178 0.822 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.352 -2.409 0.008 2.762 hybrid contribution -0.824 0.371 1.682 1.909 sum -2.176 -2.037 1.689 3.426 Atomic orbital electron populations 1.23279 0.77289 1.05117 1.01860 1.86203 1.22219 1.25439 1.87257 1.19120 0.90899 0.85205 0.93010 1.21002 1.00352 0.90977 1.09871 1.20134 0.92868 0.95375 0.95809 1.25160 1.09584 0.94678 0.90562 1.86622 1.86762 1.43738 1.15402 0.85800 0.74947 0.81509 0.81402 1.17286 1.16668 1.16849 1.21322 0.93697 0.92348 1.10186 1.96802 1.78383 1.20728 1.97541 1.21047 1.01053 0.88889 0.95288 1.17582 0.86133 0.84676 1.09891 1.84731 1.65697 1.36884 1.24605 1.20146 0.85699 0.86250 0.85171 1.19495 1.05389 1.00159 0.95080 1.20872 0.94905 0.93261 0.99999 1.19524 1.04030 0.99872 0.96558 1.19527 0.97945 0.97653 0.97755 1.36294 1.01046 1.01068 1.00955 0.77091 0.63700 0.63122 0.63024 1.26116 1.15120 1.06200 1.08647 1.26114 1.05935 1.08988 1.15024 1.26119 1.09408 1.14626 1.05935 1.84534 1.43114 1.24889 0.99172 1.23934 0.99621 0.99933 0.90764 1.68095 1.11608 1.12560 1.30361 1.24779 0.88693 0.86195 0.93810 1.68047 1.27833 1.34670 0.99117 0.92031 0.87273 0.91942 0.83927 0.85459 0.77749 0.83217 0.82241 0.90795 0.90241 0.90809 0.90811 0.90262 0.90803 0.90815 0.90258 0.90820 0.77259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 101.05 0.99 0.96 16 2 O -0.30 -0.58 10.28 -34.22 -0.35 -0.93 16 3 C 0.17 0.31 6.70 -39.12 -0.26 0.05 16 4 C -0.20 -0.03 7.64 -39.46 -0.30 -0.33 16 5 C -0.04 -0.01 5.26 -104.58 -0.55 -0.56 16 6 C -0.09 0.06 2.02 36.01 0.07 0.13 16 7 O -0.52 0.25 12.72 -35.23 -0.45 -0.20 16 8 Si 0.94 -1.35 25.31 -169.99 -4.30 -5.66 16 9 H -0.25 0.54 6.96 56.52 0.39 0.93 16 10 H -0.24 0.03 7.11 56.52 0.40 0.43 16 11 H -0.25 0.22 7.11 56.52 0.40 0.62 16 12 C -0.10 -0.13 6.22 -39.52 -0.25 -0.37 16 13 Br -0.02 -0.03 31.97 -68.01 -2.17 -2.20 16 14 C -0.04 -0.07 9.72 -39.43 -0.38 -0.45 16 15 C 0.06 0.16 5.01 -39.11 -0.20 -0.03 16 16 O -0.22 -0.78 9.72 -16.86 -0.16 -0.95 16 17 C 0.42 1.64 7.58 -15.97 -0.12 1.52 16 18 C -0.19 -0.72 6.08 -105.31 -0.64 -1.36 16 19 C -0.06 -0.18 10.19 -38.67 -0.39 -0.57 16 20 C -0.08 -0.27 6.15 -39.29 -0.24 -0.52 16 21 C -0.13 -0.40 13.65 -38.83 -0.53 -0.93 16 22 C -0.36 -0.40 12.15 29.55 0.36 -0.04 16 23 Si 1.15 -3.61 14.26 -169.99 -2.42 -6.04 16 24 C -0.45 1.16 8.65 101.05 0.87 2.04 16 25 C -0.45 1.17 8.65 101.05 0.87 2.04 16 26 C -0.45 1.16 8.65 101.05 0.87 2.03 16 27 S 0.22 0.59 23.16 -107.50 -2.49 -1.90 16 28 C 0.11 0.43 7.69 -16.02 -0.12 0.31 16 29 N -0.51 -1.93 10.47 -13.26 -0.14 -2.07 16 30 C 0.36 0.77 12.26 -92.31 -1.13 -0.36 16 31 N -0.57 -1.92 9.42 -14.16 -0.13 -2.05 16 32 H 0.06 -0.17 7.68 -51.92 -0.40 -0.57 16 33 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16 34 H 0.06 -0.20 7.65 -51.93 -0.40 -0.60 16 35 H 0.14 -0.25 3.28 -52.49 -0.17 -0.42 16 36 H 0.13 -0.09 7.19 -51.93 -0.37 -0.46 16 37 H 0.38 -1.42 8.70 45.56 0.40 -1.03 16 38 H 0.15 0.10 8.06 -52.49 -0.42 -0.33 16 39 H 0.16 0.23 8.06 -52.49 -0.42 -0.19 16 40 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 41 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 42 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 43 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 44 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 45 H 0.07 -0.16 7.96 -51.92 -0.41 -0.58 16 46 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 47 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 48 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 49 H 0.21 -0.34 8.06 -52.49 -0.42 -0.76 16 LS Contribution 461.05 15.07 6.95 6.95 Total: 0.00 -8.20 461.05 -11.91 -20.12 By element: Atomic # 1 Polarization: -3.45 SS G_CDS: -5.16 Total: -8.62 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.07 Total: 3.54 kcal Atomic # 7 Polarization: -3.84 SS G_CDS: -0.27 Total: -4.12 kcal Atomic # 8 Polarization: -1.11 SS G_CDS: -0.96 Total: -2.08 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: -6.73 Total: -11.69 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -2.49 Total: -1.90 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.17 Total: -2.20 kcal Total LS contribution 6.95 Total: 6.95 kcal Total: -8.20 -11.91 -20.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_2162980_17567452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.643 kcal (2) G-P(sol) polarization free energy of solvation -8.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds