Wall clock time and date at job start Tue Mar 9 2021 14:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35997 * 117.00047 * 2 1 4 4 C 1.38523 * 120.06388 * 0.28526 * 3 2 1 5 5 C 1.38281 * 120.00778 * 180.27218 * 4 3 2 6 6 C 1.50705 * 119.92763 * 179.74220 * 5 4 3 7 7 O 1.42903 * 109.46807 * 104.49924 * 6 5 4 8 8 Si 1.86302 * 109.47182 * 344.50307 * 6 5 4 9 9 H 1.48500 * 109.47197 * 65.72486 * 8 6 5 10 10 H 1.48496 * 109.46832 * 185.72843 * 8 6 5 11 11 H 1.48502 * 109.46742 * 305.72360 * 8 6 5 12 12 C 1.38298 * 120.14372 * 359.71652 * 5 4 3 13 13 Br 1.89102 * 119.93683 * 179.97438 * 12 5 4 14 14 C 1.38348 * 120.12952 * 0.02562 * 12 5 4 15 15 C 1.38551 * 119.98636 * 359.97438 * 14 12 5 16 16 O 1.35974 * 120.06805 * 180.02562 * 15 14 12 17 17 C 1.35417 * 118.00258 * 265.65789 * 16 15 14 18 18 C 1.41833 * 120.52611 * 174.84858 * 17 16 15 19 19 C 1.44683 * 130.33102 * 359.69690 * 18 17 16 20 20 C 1.33575 * 114.56916 * 179.85662 * 19 18 17 21 21 C 1.43202 * 124.38921 * 180.17612 * 20 19 18 22 22 C 8.34872 * 143.91036 * 169.40273 * 2 1 3 23 23 Si 9.48287 * 107.65756 * 346.98093 * 15 1 2 24 24 C 1.86304 * 109.47121 * 116.17333 * 23 22 21 25 25 C 1.86304 * 109.47008 * 236.17267 * 23 22 21 26 26 C 1.86292 * 109.47251 * 356.17352 * 23 22 21 27 27 S 1.75346 * 111.22088 * 0.42029 * 20 19 18 28 28 C 1.40026 * 117.53914 * 179.97438 * 18 17 16 29 29 N 1.33818 * 119.02958 * 359.97438 * 28 18 17 30 30 C 1.31322 * 121.04232 * 0.02562 * 29 28 18 31 31 N 1.32085 * 122.21577 * 359.97438 * 30 29 28 32 32 H 1.09009 * 109.47466 * 59.99581 * 1 2 3 33 33 H 1.09004 * 109.47498 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47298 * 299.99500 * 1 2 3 35 35 H 1.07999 * 120.00266 * 0.02562 * 4 3 2 36 36 H 1.08998 * 109.46990 * 224.50238 * 6 5 4 37 37 H 0.96692 * 114.00015 * 299.99688 * 7 6 5 38 38 H 1.07995 * 120.00848 * 179.97438 * 14 12 5 39 39 H 1.08001 * 122.71779 * 0.25771 * 19 18 17 40 40 H 1.09002 * 109.47032 * 59.99979 * 24 23 22 41 41 H 1.08996 * 109.47238 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.46707 * 300.00067 * 24 23 22 43 43 H 1.08996 * 109.47303 * 59.99864 * 25 23 22 44 44 H 1.09006 * 109.47192 * 180.02562 * 25 23 22 45 45 H 1.09007 * 109.46935 * 299.99762 * 25 23 22 46 46 H 1.08996 * 109.47449 * 59.99979 * 26 23 22 47 47 H 1.09006 * 109.46966 * 180.02562 * 26 23 22 48 48 H 1.09002 * 109.47570 * 299.99585 * 26 23 22 49 49 H 1.07998 * 118.89043 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3743 0.0060 5 6 1.9222 3.6058 0.0003 6 6 1.1011 4.8695 0.0009 7 8 1.1302 5.4557 1.3038 8 14 -0.6586 4.4668 -0.4597 9 1 -1.2663 3.6211 0.5989 10 1 -1.4353 5.7253 -0.5945 11 1 -0.6768 3.7332 -1.7507 12 6 3.3032 3.6803 -0.0055 13 35 4.1572 5.3675 -0.0140 14 6 4.0611 2.5229 -0.0061 15 6 3.4365 1.2862 -0.0004 16 8 4.1798 0.1476 -0.0004 17 6 4.4467 -0.4374 -1.1922 18 6 5.3061 -1.5633 -1.2657 19 6 6.0197 -2.2664 -0.2217 20 6 6.7481 -3.3020 -0.6472 21 6 7.5325 -4.1438 0.2052 22 6 8.1755 -4.8339 0.9044 23 14 9.2164 -5.9502 2.0374 24 6 10.7638 -6.4738 1.1417 25 6 9.6785 -5.0120 3.5791 26 6 8.2270 -7.4589 2.5016 27 16 6.6247 -3.4929 -2.3859 28 6 5.5385 -2.1191 -2.5297 29 7 4.9476 -1.5717 -3.5983 30 6 4.1596 -0.5282 -3.4761 31 7 3.9091 0.0319 -2.3064 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8901 35 1 0.2147 2.3191 0.0110 36 1 1.5145 5.5718 -0.7229 37 1 0.7764 4.8853 1.9998 38 1 5.1393 2.5834 -0.0110 39 1 5.9626 -1.9811 0.8184 40 1 11.3427 -5.5911 0.8701 41 1 11.3609 -7.1136 1.7915 42 1 10.4934 -7.0227 0.2397 43 1 8.7732 -4.7056 4.1031 44 1 10.2758 -5.6520 4.2286 45 1 10.2574 -4.1293 3.3074 46 1 7.9566 -8.0079 1.5996 47 1 8.8238 -8.0989 3.1517 48 1 7.3217 -7.1527 3.0257 49 1 3.7010 -0.1141 -4.3619 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_2162980_17567452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:42:00 Heat of formation + Delta-G solvation = 20.986116 kcal Electronic energy + Delta-G solvation = -35279.172781 eV Core-core repulsion = 30470.864431 eV Total energy + Delta-G solvation = -4808.308350 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 492.013 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.89972 -41.81320 -40.05971 -39.33312 -37.91330 -37.28832 -34.61723 -34.05646 -33.06394 -32.57326 -30.64241 -30.24426 -29.43152 -28.59707 -28.26568 -28.26476 -27.34211 -26.25175 -25.54353 -23.86645 -23.22522 -22.91691 -21.18492 -20.55245 -19.36086 -18.59116 -18.36860 -17.66128 -17.56529 -17.21078 -17.04953 -16.87967 -16.75295 -16.36894 -16.15413 -15.91945 -15.58247 -15.43530 -15.35919 -14.96662 -14.51895 -14.42376 -14.14202 -14.10740 -13.99286 -13.97714 -13.85914 -13.80334 -13.14896 -13.13983 -13.06565 -12.96053 -12.89959 -12.79337 -12.69613 -12.45493 -12.35597 -12.26974 -12.20143 -12.10840 -11.89772 -11.70272 -11.46783 -11.44101 -11.19149 -10.78836 -10.76493 -10.65926 -10.52200 -10.36246 -10.03218 -9.44867 -9.35447 -1.10398 -0.56200 -0.46626 -0.38507 -0.22505 0.30922 0.43184 0.47365 1.03031 1.30855 1.36320 1.46566 1.47780 1.61713 1.72482 1.86076 1.92904 2.17700 2.31840 2.38342 2.45878 2.55584 2.66210 2.97792 3.10498 3.18890 3.25953 3.35754 3.50673 3.66783 3.74796 3.89284 4.10011 4.11939 4.20542 4.21891 4.31068 4.43636 4.50027 4.53158 4.60574 4.65559 4.75226 4.81848 4.86274 4.86415 4.89321 4.92033 4.92135 4.94489 5.02395 5.35113 5.61661 5.70311 5.71227 5.71349 6.06887 6.35017 6.65350 6.66119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.320 6.320 3 C 0.161 3.839 4 C -0.197 4.197 5 C -0.035 4.035 6 C -0.093 4.093 7 O -0.534 6.534 8 Si 0.970 3.030 9 H -0.231 1.231 10 H -0.264 1.264 11 H -0.251 1.251 12 C -0.104 4.104 13 Br -0.025 7.025 14 C -0.045 4.045 15 C 0.040 3.960 16 O -0.224 6.224 17 C 0.414 3.586 18 C -0.198 4.198 19 C -0.066 4.066 20 C -0.091 4.091 21 C -0.178 4.178 22 C -0.341 4.341 23 Si 1.206 2.794 24 C -0.463 4.463 25 C -0.463 4.463 26 C -0.463 4.463 27 S 0.228 5.772 28 C 0.094 3.906 29 N -0.521 5.521 30 C 0.356 3.644 31 N -0.572 5.572 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.164 0.836 36 H 0.124 0.876 37 H 0.390 0.610 38 H 0.152 0.848 39 H 0.168 0.832 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.069 0.931 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 -2.941 2.869 4.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.232 6.232 3 C 0.113 3.887 4 C -0.216 4.216 5 C -0.037 4.037 6 C -0.202 4.202 7 O -0.340 6.340 8 Si 0.790 3.210 9 H -0.154 1.154 10 H -0.188 1.188 11 H -0.175 1.175 12 C -0.184 4.184 13 Br 0.061 6.939 14 C -0.065 4.065 15 C -0.003 4.003 16 O -0.126 6.126 17 C 0.220 3.780 18 C -0.213 4.213 19 C -0.096 4.096 20 C -0.206 4.206 21 C -0.180 4.180 22 C -0.376 4.376 23 Si 1.387 2.613 24 C -0.571 4.571 25 C -0.571 4.571 26 C -0.571 4.571 27 S 0.493 5.507 28 C -0.156 4.156 29 N -0.242 5.242 30 C 0.065 3.935 31 N -0.303 5.303 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.181 0.819 36 H 0.142 0.858 37 H 0.239 0.761 38 H 0.170 0.830 39 H 0.185 0.815 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.976 -2.865 0.635 3.538 hybrid contribution -0.635 0.508 1.527 1.730 sum -2.612 -2.357 2.162 4.129 Atomic orbital electron populations 1.23581 0.75506 1.06416 1.03130 1.86182 1.24197 1.25663 1.87206 1.19232 0.90773 0.85802 0.92900 1.21163 1.01209 0.90176 1.09015 1.20317 0.92579 0.96014 0.94829 1.25289 1.10287 0.94045 0.90608 1.86592 1.87060 1.44496 1.15873 0.85418 0.73454 0.80614 0.81466 1.15392 1.18796 1.17465 1.21389 0.94208 0.91964 1.10798 1.96788 1.78607 1.20949 1.97593 1.21083 1.01289 0.88851 0.95259 1.17798 0.86718 0.84551 1.11274 1.84719 1.65922 1.37325 1.24589 1.20303 0.85754 0.86355 0.85541 1.19613 1.05820 1.00502 0.95332 1.20965 0.94990 0.93319 1.00308 1.19676 1.04061 0.99996 0.96870 1.19967 0.99554 0.99200 0.99283 1.37766 0.99826 1.00027 0.99973 0.76351 0.62136 0.61448 0.61328 1.26231 1.15602 1.06345 1.08907 1.26229 1.06025 1.09217 1.15583 1.26233 1.09612 1.15144 1.06086 1.84361 1.42780 1.24476 0.99100 1.24152 1.00032 1.00416 0.91045 1.68148 1.12325 1.13324 1.30388 1.25486 0.87953 0.85533 0.94483 1.68113 1.28004 1.34864 0.99305 0.91005 0.86144 0.90348 0.81933 0.85787 0.76110 0.83030 0.81466 0.91117 0.89102 0.91065 0.91091 0.89136 0.91130 0.91105 0.89111 0.91135 0.74001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.32 -1.30 10.28 -79.67 -0.82 -2.12 16 3 C 0.16 0.65 6.70 22.57 0.15 0.80 16 4 C -0.20 0.05 7.64 22.35 0.17 0.22 16 5 C -0.03 -0.02 5.26 -19.84 -0.10 -0.12 16 6 C -0.09 0.16 2.02 71.24 0.14 0.30 16 7 O -0.53 0.74 12.72 -148.98 -1.90 -1.16 16 8 Si 0.97 -3.78 25.31 68.60 1.74 -2.04 16 9 H -0.23 1.56 6.96 99.48 0.69 2.25 16 10 H -0.26 0.12 7.11 99.48 0.71 0.83 16 11 H -0.25 0.72 7.11 99.48 0.71 1.43 16 12 C -0.10 -0.33 6.22 22.31 0.14 -0.20 16 13 Br -0.03 -0.09 31.97 -20.37 -0.65 -0.74 16 14 C -0.04 -0.20 9.72 22.37 0.22 0.02 16 15 C 0.04 0.26 5.01 22.58 0.11 0.37 16 16 O -0.22 -1.99 9.72 -17.54 -0.17 -2.16 16 17 C 0.41 3.90 7.58 85.51 0.65 4.54 16 18 C -0.20 -1.89 6.08 -20.31 -0.12 -2.01 16 19 C -0.07 -0.52 10.19 22.86 0.23 -0.29 16 20 C -0.09 -0.76 6.15 22.46 0.14 -0.62 16 21 C -0.18 -1.39 13.65 30.01 0.41 -0.98 16 22 C -0.34 -0.98 12.15 74.32 0.90 -0.07 16 23 Si 1.21 -8.26 14.26 68.60 0.98 -7.28 16 24 C -0.46 2.71 8.65 113.37 0.98 3.69 16 25 C -0.46 2.69 8.65 113.37 0.98 3.67 16 26 C -0.46 2.70 8.65 113.37 0.98 3.68 16 27 S 0.23 1.60 23.16 -56.49 -1.31 0.30 16 28 C 0.09 0.90 7.69 84.82 0.65 1.55 16 29 N -0.52 -4.50 10.47 -195.88 -2.05 -6.55 16 30 C 0.36 1.74 12.26 180.94 2.22 3.96 16 31 N -0.57 -4.42 9.42 -311.70 -2.94 -7.36 16 32 H 0.07 -0.48 7.68 -2.38 -0.02 -0.50 16 33 H 0.12 -0.86 8.14 -2.38 -0.02 -0.88 16 34 H 0.08 -0.62 7.65 -2.38 -0.02 -0.63 16 35 H 0.16 -0.82 3.28 -2.91 -0.01 -0.83 16 36 H 0.12 -0.16 7.19 -2.39 -0.02 -0.18 16 37 H 0.39 -3.28 8.70 -74.06 -0.64 -3.92 16 38 H 0.15 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 41 H 0.09 -0.71 7.96 -2.39 -0.02 -0.73 16 42 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 43 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 44 H 0.09 -0.70 7.96 -2.38 -0.02 -0.72 16 45 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 46 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 47 H 0.09 -0.71 7.96 -2.38 -0.02 -0.73 16 48 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 49 H 0.24 -0.88 8.06 -2.91 -0.02 -0.90 16 Total: 0.00 -19.95 461.05 3.99 -15.96 By element: Atomic # 1 Polarization: -7.56 SS G_CDS: 1.14 Total: -6.42 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 9.97 Total: 19.59 kcal Atomic # 7 Polarization: -8.93 SS G_CDS: -4.99 Total: -13.92 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: -2.88 Total: -5.44 kcal Atomic # 14 Polarization: -12.04 SS G_CDS: 2.71 Total: -9.33 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.31 Total: 0.30 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -0.65 Total: -0.74 kcal Total: -19.95 3.99 -15.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_2162980_17567452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.947 kcal (2) G-P(sol) polarization free energy of solvation -19.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds